BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05140.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470504 jgi|Araly1|470504|fgenesh2_kg.1__458__AT1G05140.1 2161 0.0
> Ahg470504 jgi|Araly1|470504|fgenesh2_kg.1__458__AT1G05140.1
Length=1426
Score = 2161 bits (1170), Expect = 0.0
Identities = 1355/1442 (94%), Gaps = 21/1442 (1%)
Strand=Plus/Plus
Query 23 TCAATCCTATCCACAGATGGTTAATGTTTTTTCTTTATCTGCTCTGTTTTTCAATGGCTT 82
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCAATCCTATCCACAGATCGTTAATGTTTTTTCGTTATCTGCTCTGTTTTTCAATGGCTT 60
Query 83 CTATAGTTCCTCTTCTCCGTACTCTCTTAACTTTCAAAACCTCACGAAATCATGCTTTTA 142
|||||||| |||||||||| | |||| |||| ||||||||||||||||||||||| |||
Sbjct 61 CTATAGTTTCTCTTCTCCG--CACTCTAAACTCTCAAAACCTCACGAAATCATGCTATTA 118
Query 143 AACATTTCTTCTTCTCCAATTTCTCATCGAATTCCTCAT-TTCCTCTCTGA-TTTTAACA 200
||||||| ||||||||||||||||||||||| ||||| | ||||||||| | ||| ||||
Sbjct 119 AACATTTGTTCTTCTCCAATTTCTCATCGAAATCCTC-TCTTCCTCTCT-ACTTTCAACA 176
Query 201 ATCCCACTTCAAATTTCCCTCCGAAATCCAAAACCCATCTCCCAAAATCTAATCTCTCCA 260
|||||||||||||||| ||||| |||| | | || | || | | ||||||||||
Sbjct 177 ATCCCACTTCAAATTTTCCTCCAAAAT-C---TCATAT-TTCC---A-CCAATCTCTCCA 227
Query 261 CTTTATCGAACCATAGCC-TCTACGGCACCAAGAACAGAGCTTT-CTATAAAAACAAGAG 318
|| ||||||| || | || ||||||||||||||||||||||||| || | |||||||||
Sbjct 228 CTCTATCGAATCA-AACCTTCTACGGCACCAAGAACAGAGCTTTACT-CAGAAACAAGAG 285
Query 319 AAACCCTTATAACAGAACACAAGCTCTCGGTCGATTCGATTTCGGAAGTCTCGAATCAGT 378
| |||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 286 ATACCCATATAACAGAACACAAGCTCTCGCTGGATTCGATTTCGGAAGTTTCGAATCAGT 345
Query 379 TCTCGAAGCTTCCGCTGTTCTCACTGCGATCATCGTCGTACACGAGACCGGTCACTTTTT 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 346 TCTCGAAGCTTCCGCTGTTCTCACTGCGATCATCGTCGTCCACGAGACCGGTCACTTCTT 405
Query 439 AGCTGCTTCTCTTCAAGGTATCCGTGTGAGTAAATTCGCGATAGGGTTTGGTCCGATTCT 498
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 406 AGCTGCTTCTCTTCAAGGTATCCATGTGAGTAAATTCGCGATAGGTTTTGGTCCGATTCT 465
Query 499 AGCTAAATTCAATTCCAACAATGTCGAATACTCTCTTAGGGCCTTTCCATTAGGTGGATT 558
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 466 AGCTAAATTCAATTCCAACAATGTCGAATACTCTCTTAGGGCTTTTCCTTTAGGTGGATT 525
Query 559 TGTTGGATTCCCTGATAATGATCCCGACAGT-GATATCCCTGTAGACGACAGAAATCTTC 617
|||||||||||||||||| |||||||||||| || |||||| ||||||||| ||||||||
Sbjct 526 TGTTGGATTCCCTGATAACGATCCCGACAGTGGA-ATCCCTTTAGACGACAAAAATCTTC 584
Query 618 TCAAGAATCGACCGATTTTGGATAGAGTGATTGTTGTTTCAGCTGGAATTGTCGCTAACG 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TCAAGAATCGACCGATTTTGGATAGAGTGATTGTTGTTTCAGCTGGAATTGTCGCTAACG 644
Query 678 TTATCTTCGCTTACGCTATAATCTTTACTCAAGTGGTATCTGTTGGATTACCAGTTCAAG 737
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TCATCTTCGCTTACGCTATAATCTTTACTCAAGTGGTATCTGTTGGATTACCAGTTCAAG 704
Query 738 AATCTTTTCCTGGAGTTCTTGTTCCTGATGTTAAGTCTTTCTCTGCTGCTTCTCGTGATG 797
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 705 AATCGTTTCCTGGAGTTCTTGTTCCTGATGTTAAATCTTTCTCTGCTGCTTCTCGTGATG 764
Query 798 GATTGCTTCCGGGAGATGTTATCTTAGCCGTTGATGGTACTGAGCTATCTAATTCCGGTT 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GATTGCTTCCGGGAGATGTTATCTTAGCCGTTGATGGTACTGAGCTATCTAATTCCGGTT 824
Query 858 CTGATTCGGTTTCTAAAGTTGTTGATGTTGTGAAGAGGAATCCGGAGCACAATGTCTTGC 917
||||||| ||||||||||||||| |||| || ||||||||||| ||||||||||| ||||
Sbjct 825 CTGATTCCGTTTCTAAAGTTGTTAATGTCGTTAAGAGGAATCCAGAGCACAATGTGTTGC 884
Query 918 TCAGGATCGAAAGAGGGAAGGAGAGTTTCGAAATCCGGATCACGCCGGATAAGAGTTTCG 977
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 885 TCAGGATCGAAAGAGGGAAGGAGAATTTCGAAATCCGGATCACGCCGGATAAGAGTTTCG 944
Query 978 ATGGAACGGGGAAAATCGGTGTTCAGTTATCACCGAATGTTAGATTCGGTAAGGTGAGAC 1037
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 945 ATGGAACGGGGAAAATCGGTGTTCAGTTATCACCGAATGTTAGATTCTCTAAGGTGAGAC 1004
Query 1038 CGAAGAACATACCGGAAACTTTTAGTTTCGCCGGTAGAGAATTCTTTGGGCTCTCTTACA 1097
|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 1005 CGAAGAACATACCGGAAACTCTTAGTTTCGCCGGGAGAGAGTTCTTTGGGCTCTCTTACA 1064
Query 1098 ATGTATTGGATAGTTTGAAACAGACTTTCTTGAACTTCTCTCAAACCGCTAGTAAAGTCG 1157
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1065 ATGTTTTGGACAGTTTGAAACAAACTTTCTTGAACTTCTCTCAAACCGCTAGTAAAGTCG 1124
Query 1158 CTGGTCCAGTGGCGATTATTGCGGTTGGAGCAGAAGTAGCGAGATCAAACGCGGACGGGC 1217
||||||| |||||||| |||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 1125 CTGGTCCCGTGGCGATCATTGCGGTTGGAGCTGAAGTGGCGAGATCAAACACGGACGGGC 1184
Query 1218 TTTACCAGTTTGCAGCATTGCTGAATCTAAACCTTGCTGTGATCAATCTGTTGCCTTTAC 1277
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1185 TATACCAGTTTGCAGCATTGCTGAATCTAAACCTTGCGGTGATCAATCTGTTGCCTTTAC 1244
Query 1278 CGGCTCTCGATGGTGGAACTTTGGCTCTGATCTTATTGGAAGCGGTTCGAGGCGGGAGGA 1337
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 CGGCTCTTGATGGTGGAACTTTGGCTCTGATCTTATTGGAAGCGGTTCGAGGCGGGAGGA 1304
Query 1338 AATTACCGTTAGAGGTGGAGCAAGGGATTATGTCTTCTGGAATCATGCTTGTATTATTTC 1397
||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1305 AATTACCGTTAGAGGTGGAACAAGGGATTATGTCGTCTGGAATCATGCTTGTGTTATTTC 1364
Query 1398 TCGGTTTATTTCTCATCGTAAAGGACACACTTAATCTTGATTTCATCAAAGAAATGTTGT 1457
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TCGGTTTATTTCTCATCGTCAAGGACACACTTAATCTTGATTTCATCAAAGAAATGTTGT 1424
Query 1458 AA 1459
||
Sbjct 1425 AA 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5