BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05150.1
Length=2894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470505 jgi|Araly1|470505|fgenesh2_kg.1__459__AT1G05150.1 4373 0.0
Ahg482172 jgi|Araly1|482172|fgenesh2_kg.4__1232__AT2G32450.1 2529 0.0
> Ahg470505 jgi|Araly1|470505|fgenesh2_kg.1__459__AT1G05150.1
Length=2827
Score = 4373 bits (2368), Expect = 0.0
Identities = 2705/2862 (95%), Gaps = 46/2862 (2%)
Strand=Plus/Plus
Query 42 AGAAGAAACTTTACAGATCAGAGGATCCAATGTCGAGATTCTCGCTACTAAGCGCTGAAT 101
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1 AGAAGAAACTTTACAGATCAGAGGATCCAATGTCGAGATTCTCGCAACTAAGCCCTGAAA 60
Query 102 TTGATCAATCTCTGTTCTCTT-TTTCCTTCATTTGATTCCCTTTTCTGGGTCTCTCTAAT 160
|||||||||||||| ||| || |||||||||||||||| || || | | ||
Sbjct 61 TTGATCAATCTCTGCTCT-TTGTTTCCTTCATTTGATT-CC----CT---T-T-TC---- 105
Query 161 TTATTGGCGTCGTTGTTTCCTTATCCTGAA---TCCTTATCTTCAATCCTCTGTTCTGTT 217
||| |||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 106 ----TGG-GTCGTTGTTTCCTTATCCTGAATCCTCCTTATATTGAATCCTCTGTTCTGTG 160
Query 218 TCTCAAACCTAAAAAAGTTTGAAACTTTCCTGAAAAAATGGCGACTAGAGGAAGCAGATC 277
|| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 161 TCAAAAACCTAAAAAAGGTTGAAACTTTCCTAAAAAAATGGCGACTAGAGGAAGCAGATC 220
Query 278 GGAGAAAGTTAAGAGAATTTTCCAGCAATTCGACGGGAATCATGATGGTGGGCTTAACCG 337
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GGAGAAAGTTAAGAGGATTTTCCAGCAATTCGACGGGAATCATGATGGTGGGCTTAACCG 280
Query 338 TGAAGAGATGGCGGCTCTTGTCGTAGCTGTTAACCCTAGGGTTAAATTCAGTGACGAGCA 397
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 281 AGAAGAGATGGCGGCTCTTGTTGTTGCTGTTAACCCTAGGGTTAAATTCAGTGACGAACA 340
Query 398 GATCAACGCCATTCTCGATGAAGTTTTTCGAACTTACGCTGAATTCATCGATCCAAACAA 457
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 341 GATCAACGCGATTCTCGATGAAGTTTTTCGAACTTACGCTGAATTCATCGATCCTAACAA 400
Query 458 GGGTTTGACCTACGACGGTCTCCTACGTACTTACGACGACGGTGCCGGAGATGTTGACAG 517
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 401 GGGTTTGACCTACGACGGTCTTCTACGTACTTACGACGACGGTGCCGGAGATGTTGACAG 460
Query 518 AGATTTCGACGCATTGGGGCTTGAGTTAAACGCTGATGAGACGACGATTAAAGGGTCTGA 577
||||||||||||||| ||||||||||||||||||||| || | ||||||||| |||||
Sbjct 461 AGATTTCGACGCATTAGGGCTTGAGTTAAACGCTGAT--GA-GTCGATTAAAGACTCTGA 517
Query 578 GGCGGCTTCGTCTTCTTCGATTACTGATGAGAGAGCTGTTGAAGCGCAGAAGAAACAGAG 637
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 518 GGTGGCTTCGTCTTCTTCGATTACTGATGAGAGAGCTGTTGAGGCACAGAAGAAACAGAG 577
Query 638 AACAGCTGCTTGGGCTGTTTCGCCGAATCACGGAATCGTTTTTGACGAGACGTGGAAGTT 697
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 578 AACTGCTGCTTGGGCTGTTTCGCCGAATCATGGTATCGTTTTTGACGAGACGTGGAAGTT 637
Query 698 AGTTGATGATTTGGAGATTCTGGTGAAGAGATTGAAGTCGAAACAGGAGAAAGATGGAAA 757
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 638 AGTTGATGATTTGGAGATTCTGGTGAAGAGATTGAAGTCGAAACAGGAGAGAGATGGGAA 697
Query 758 ATTGAAAGCTG---AT---AATAACAATAACAATGTTGATGCGTTTTCTGATGCTGGATG 811
||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 698 ATTGAAAGCTGATAATAACAATAACAATAACAATGTTGATGCGTTTTCTGATGCTGGATG 757
Query 812 GTCTAGAGAGTTAGGTCCGTCTTCTGAGATCTCTGAGAAGAGAATCTATTGGGAAGAATC 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 GTCTAGAGAGTTAGGTCCGTCTTCTGAGATCTCTGAGAAGAGAATCTATTGGGAAGAATC 817
Query 872 GAGTCATGATTATGGAGTGTTTGTGAAGGAATTAGGTGTTTTGAGAAGTAAAGCTGATGG 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GAGTCATGATTATGGAGTGTTTGTGAAGGAATTAGGTGTTTTGAGAAGTAAAGCTGATGG 877
Query 932 AGCTAGGTCTAGAGAAGAAGCTTTTGATGGACATATGGCTATTGGTAGGGTTTTATATGA 991
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 878 AGCTAGATCTAGAGAGGAAGCTTTTGATGGACATATGGCGATTGGTAGGGTTTTATATGA 937
Query 992 GCATCAGTTGTTTAAAGAAGCTCTTGTTAGCTTCAAGAGAGCTTGTGAATTGCAACCGAC 1051
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 938 GCATCAGTTGTTTAAAGAAGCTCTTGTTAGCTTCAAGAGAGCTTGCGAATTGCAACCTAC 997
Query 1052 TGATGTGAGACCTCATTTCAAAGCTGGGAACTGTCTTTACGTTTTGGGGAAATGCAAAGA 1111
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 998 TGATGTGAGACCTCATTTCAAAGCTGGGAATTGTCTTTACGTTTTGGGGAAATGCAAAGA 1057
Query 1112 GTCGAAAGATGAGTTTTTGTTGGCGTTGGAAGCTGCTGAGTCGGGCGGGAACCAATGGGC 1171
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 1058 GTCGAAAGATGAGTTTTTGTTGGCGTTGGAAGCGGCTGAGTCGGGCGGGAATCAGTGGGC 1117
Query 1172 TTATTTGCTTCCTCAGATTTATGTCAATCTCGGTATCGCGCTTGAAGGCGAAGGTATGGT 1231
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 TTATTTACTTCCTCAGATTTATGTCAATCTCGGTATCGCGCTTGAAGGCGAAGGTATGGT 1177
Query 1232 TTTGAGTGCTTGTGAGTATTATAGAGAAGCTGCGATTCTATGTCCTACGCATTTTAGAGC 1291
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1178 TTTAAGTGCTTGTGAGTATTATAGAGAAGCTGCGATTCTCTGTCCTACGCATTTTAGAGC 1237
Query 1292 CTTGAAGCTTCTAGGTAGTGCGTTGTTCGGTGTAGGAGAGTATAGAGCAGCGGTTAAGGC 1351
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1238 CTTGAAGCTTCTAGGTAGTGCGTTGTTTGGTGTAGGAGAGTATAGAGCAGCGGTTAAGGC 1297
Query 1352 CTTAGAGGAAGCTATATACTTGAAACCGGATTACGCAGATGCTCATTGTGATTTAGCTTC 1411
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1298 CTTAGAGGAAGCTATATACTTGAAACCGGATTACGCGGATGCTCATTGTGATTTAGCTTC 1357
Query 1412 GTCTTTGCATTCAATGGGTGAAGATGAGAGAGCTATCGAGGTTTTCCAGAGAGCTATAGA 1471
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1358 GTCTTTGCATTCAATGGGTGAAGATGAGAGAGCTATCGAGGTTTTCCAGAGAGCGATTGA 1417
Query 1472 CTTGAAACCTGGCCATGTTGATGCTCTGTATAATCTTGGTGGGCTTTACATGGATTTAGG 1531
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1418 CTTGAAACCTGGCCATGTTGATGCTCTGTATAATCTCGGTGGGCTTTACATGGATTTAGG 1477
Query 1532 TAGGTTTCAGAGAGCTTCGGAGATGTACACTAGGGTCTTAACGGTATGGCCTAACCATTG 1591
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1478 TAGGTTTCAGAGAGCTTCGGAAATGTACACTAGGGTCTTAGCGGTATGGCCTAACCATTG 1537
Query 1592 GCGTGCTCAGCTTAACAAGGCGGTTTCTTTGTTAGGTGCTGGAGAGACCGAAGAAGCTAA 1651
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 GCGTGCTCAGCTCAACAAGGCGGTTTCTTTGTTAGGTGCTGGAGAGACCGAAGAAGCTAA 1597
Query 1652 ACGAGCGCTTAAGGAAGCACTCAAACTGACAAACCGGGTTGAATTGCATGATGCAATATC 1711
|||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1598 ACGAGCACTTAAGGAAGCGCTGAAACTGACAAACCGGGTTGAATTGCATGATGCGATATC 1657
Query 1712 TCATTTGAAACATTTGCAGAAGAAAAAGGGTAAAAACAATGGAAATGGTAATGGTGGAGA 1771
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1658 TCATTTGAAACATTTGCAGAAGAAAAAGGGTAAAAAGAATGGAAATGGTAATGGAGGAGA 1717
Query 1772 AGGTCCGTTCATCGTCGTGGAACCTTCCAAGTTCAAGACTGTGGGTGAGAAGACGACTTT 1831
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1718 AGGTCCATTCATCGTCGTGGAACCTTCCAAGTTCAAGACTGTGGGTGAGAAGACGACTCT 1777
Query 1832 GAGGCCGGATTTAGCCACAGCCCTTCAAATTAGAGCCTTTCAGAGGGTTACAAGGCTTGG 1891
||| |||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1778 GAGACCGGATTTAGCCACGGCTCTTCAAATTAGGGCCTTTCAGAGAGTTACAAGGCTTGG 1837
Query 1892 GAAATGCGATGTGGAGGCTGTACGAAAGGAGATGAGAGACAATGATGTTCCTGTATCGTA 1951
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 1838 GAAATGCGATGTGGAGGCTGTGCGAAAGGAGATGAGAGACAACGATGTTCCTGTTTCGTA 1897
Query 1952 TTCCGGTAGTGGTGGACCGACGAAATCTATTCGGAAACCTAATTTAGAGGAGATTCTACG 2011
|||||| || || || || || ||||||||| ||||||||||||||||||||||||||||
Sbjct 1898 TTCCGGAAGCGGCGGGCCAACAAAATCTATTAGGAAACCTAATTTAGAGGAGATTCTACG 1957
Query 2012 GCGTCTGCTCAGCTCCTTGAAACCTGACACTTTTCAAGGAGCCATCAAGGCTATAAACGA 2071
|||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 1958 GCGTCTGCTCAGTTCCTTGAAACCCGACACTTTTCAAGGAGCGATTAAGGCTATAAACGA 2017
Query 2072 GAAAATCCTCGCGCTTCTCGATGATTCAGGGTCGGGAAGAGTTGATATGGGTATGTTTTA 2131
|||||||||| | ||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 2018 GAAAATCCTCTCTCTTCTTGATGACTCGGGGTCGGGAAGAGTTGATATGGGTATGTTTTA 2077
Query 2132 CGCTGTGATTGCTCCTTTATGCGGTGGACATTCCGACAAAAGGAAAAGAGTTGCTTTTGA 2191
|| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 2078 TGCCGTGATTGCTCCTTTATGCGGTGGACATTCAGACAAACGGAAAAGAGTTGCTTTCGA 2137
Query 2192 TGCGCTTCTTTGGAGACCTGTAAACGAAGGAAGCTCTCAGATTACAAAAACGGATGCAGT 2251
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2138 TGCGCTTCTTTGGAGACCCGTAAACGAAGGAAGCTCTCAGATTACAAAAACAGATGCAGT 2197
Query 2252 CAAATACATTAAACTGTTGAGAGCTATTTACATTCCATCACATGGAATGAGTGAAATGTT 2311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2198 CAAATACATTAAACTGTTGAGAGCTATTTACATTCCATCACATGGAATGAGTGAAATGTT 2257
Query 2312 AGAAGTTCACGGAGAAGAAGAAGCTGAATCCTCAGTGACAGTGACATTTAATCAGTTTTT 2371
|||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2258 AGAAGTTCACGGGGAAGAAGAAGCTGGTTCCTCAATGACAGTGACATTTAATCAGTTTTT 2317
Query 2372 AGCCATGTTCGACGATCCAGATTGGGGATTTGGTATAATGTCTACGATCCTTAAACTGGA 2431
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2318 AACCATGTTCGACGATCCAGATTGGGGATTTGGTATCATGTCTACGATCCTTAAACTGGA 2377
Query 2432 GGCAAACGATAGAAACCGTCATGGAAACCAAGTTTGCTCGGTTTGTCGGTACCCGGTAAT 2491
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 2378 GGCAAACGATAGAAACCGTCATGGAAACCAAGTTTGCTCGGTTTGTCGGTATCCGATAAT 2437
Query 2492 CGGATCCCGGTTTAAGGAAGTGAAAGCCCGGTTTAGTTTGTGTAACCAGTGTTACGGTGA 2551
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2438 CGGATCCCGGTTTAAGGAAGTGAAAGCCCGGTTTAGTTTGTGTAACCAGTGTTACAGTGA 2497
Query 2552 AGGGAAGGTTCCTCCTTCGTTTAAACAAGAGGAATACAAGTTCCGAGAATATGAGAGTGA 2611
|||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 2498 AGGGAAGGTTCCTCCTTCGTCTAAACAGGAGGAATACAAGTTCCGTGAATATGAGAGTGA 2557
Query 2612 AGCTGAAGCCATGAAAGCTAAGTGTGTATGTTTCTCGATGCAATCTCATAAAAAAGCGAT 2671
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 2558 AGCTGAAGCCATGAAAGCTAAGTGTGTCTGTTTCTCGATGCAATCTCATAAAAAACCGAT 2617
Query 2672 TGCCACTTGATAGAAGGAACAAAGAAACTAACTCATCAAGTGTCTGTCTACTCCAATCTT 2731
|||||||||||||||| |||||||||||||||||||||||||| | | |||| | ||||
Sbjct 2618 TGCCACTTGATAGAAGAAACAAAGAAACTAACTCATCAAGTGT-T-T--ACTCGAGTCTT 2673
Query 2732 TGTGTCTAATTTGAAAATTGTAACACTTTCTTTTT-AACTTGTGTGCATAGTTTCAGTTT 2790
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 2674 TGTGTCTAATTTGAAAATTGTAACACTTTCTTTTTTAACTTGTGTGCATAGTTTCAGGT- 2732
Query 2791 AAGTGTATGATGATGATTGATGAGACTGCACAATGTTGTTTTGGTAAATCACGCAATTGC 2850
|||||||||||| | | || | | |||||||||||||||||||||||||||||||||||
Sbjct 2733 AAGTGTATGATG-T--T-GA-G-G-CTGCACAATGTTGTTTTGGTAAATCACGCAATTGC 2785
Query 2851 GTTTTAGACCAATTTCAGTTTGCAAATTTAGAATTTGATTTT 2892
||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 2786 GTTATAGACCAATTTCGGTTTGCAAATTTAGAATTGGATTTT 2827
> Ahg482172 jgi|Araly1|482172|fgenesh2_kg.4__1232__AT2G32450.1
Length=2602
Score = 2529 bits (1369), Expect = 0.0
Identities = 2110/2462 (86%), Gaps = 74/2462 (3%)
Strand=Plus/Plus
Query 249 GAAAAAATGGCGACTAGAGGAAGCAGATCGGAGAAAGTTAAGAGAATTTTCCAGCAATTC 308
||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 79 GAAAATATGACGACCAGAGGAAGCAGATCGGAGAAAGTCAAGAGAATTTTCCAGCAATTC 138
Query 309 GACGGGAATCATGATGGTGGGCTTAA-CCGTGAAGAGATGGCGGCTCTTGTCGTAGCTGT 367
|| || || | ||| || || |||| | | ||||||||| | ||||| |||||||||||
Sbjct 139 GATGGAAACCGTGACGG-CGGTTTAAGCAGAGAAGAGATGTCAGCTCTCGTCGTAGCTGT 197
Query 368 TAACCCTAGGGTTAAATTCAGTGACGAGCAGATCAACGCCATTCTCGATGAAGTTTTTCG 427
|||||||| ||||||||||| ||||| || |||| ||| |||||||| ||||| |||||
Sbjct 198 GAACCCTAGAGTTAAATTCAGCGACGAACAAATCAGCGCAATTCTCGACGAAGTGTTTCG 257
Query 428 AACTTACGCTGAATTCATCGATC-CAAACAAGGGTTTGACCTACGACGGTCTCCTACGTA 486
|| ||||||||||||||||| | | | || |||||||||| |||||||| || || |
Sbjct 258 TACCTACGCTGAATTCATCGA-CGGAGATAAAGGTTTGACCTTTGACGGTCTTCTCCGAA 316
Query 487 CTTACGACGACGGTGCCGGAGATGTTGA-CAGAGATTTCGACGCATTGGGGCTTGAGTTA 545
|||||||||||||||| ||||||||||| | | ||||||||||| || ||| |||||||
Sbjct 317 CTTACGACGACGGTGCTGGAGATGTTGATC-GTGATTTCGACGCTTTAGGGATTGAGTTT 375
Query 546 AACGCTGATGAGACGACGATTAAAGGGT--CTGAGGCGGCTTCGTCTTCTTCGATTACTG 603
||||| |||||| | | ||||||| || || ||||||||||||||||||||||
Sbjct 376 AACGCCGATGAG-C--C----AAAGGGTGGCT-CGGAAGCTTCGTCTTCTTCGATTACTG 427
Query 604 ATGAGAGAGCTGTTGAAGCGCAGAAGAAACAGAGAACAGCTGCTTGGGCTGTTTCGCCGA 663
|||||||||||||||| ||||||||| | |||||||| || |||||||| ||||||||||
Sbjct 428 ATGAGAGAGCTGTTGAGGCGCAGAAGCAGCAGAGAACGGCGGCTTGGGCGGTTTCGCCGA 487
Query 664 ATCACGGAATCGTTTTTGACGAGACGTGGAAG-TTAGTTGATGATTTGGAGATTCTGGTG 722
|||| ||||| |||||||| |||||||||||| || |||||||||||||||||| ||||
Sbjct 488 ATCATGGAATTGTTTTTGATGAGACGTGGAAGCTT-GTTGATGATTTGGAGATTTTGGTT 546
Query 723 AAGAGATTGAAGTCGAAACAGGAGAAAGATGGAAAATTGAAAGCT-GATAATAACAATAA 781
||||| |||||||| || |||||||||||||| |||||||||| | |||||| |||||
Sbjct 547 AAGAGGTTGAAGTCTAAGCAGGAGAAAGATGGGAAATTGAAAG-TGGATAAT---AATAA 602
Query 782 CAATGTTGATGCGTTTTCTGATGCTGGATGGTCTAGAGAGTTAGGTCCGTCTTCTGAGAT 841
||||| ||||||||||||||||||||||||||||||||||| || |||||||| || ||
Sbjct 603 TAATGTGGATGCGTTTTCTGATGCTGGATGGTCTAGAGAGTTGGGACCGTCTTCGGATAT 662
Query 842 CTCTGAGAAGAGAATCTATTGGGAAGAATCGAGTCATGATTATG-GAGTGTTTGTGAAGG 900
|| || ||||||||||||||||||||||||||||| ||||| | | |||||||||||||
Sbjct 663 TTCGGATAAGAGAATCTATTGGGAAGAATCGAGTCACGATTACGCG-GTGTTTGTGAAGG 721
Query 901 AATTAGGTGTTTTGAGAAGTAAAGCTGATGGAGCTAGGTCTAGAGAAGAAGCTTTTGATG 960
|||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 722 AATTAGGTGTGCTGAGAAGTAAAGCTGATGGTGCTAGATCAAGAGAAGAAGCTTTTGATG 781
Query 961 GACATATGGCTATTGGTAGGGTTTTATATGAGCATCAGTTGTTTAAAGAAGCTCTTGTTA 1020
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 782 GACATATGGCGATTGGTAGGGTTTTGTATGAGCATCAGTTGTTTAAAGAAGCTCTTGTTA 841
Query 1021 GCTTCAAGAGAGCTTGTGAATTGCAACCGACT-GATGTGAGACCTCATTTCAAAGCTGGG 1079
| || ||||||||||| || |||||||||| | |||||||||||||||||||||||||||
Sbjct 842 GTTTTAAGAGAGCTTGCGAGTTGCAACCGA-TGGATGTGAGACCTCATTTCAAAGCTGGG 900
Query 1080 AACTGTCTTTACGTTTTGGGGAAATGCAAAGAGTCGAAAGATGAGTTTTTGTTGGCGTTG 1139
|| |||||||| || ||||||| | |||||||||||||| |||||||||||||| |||
Sbjct 901 AATTGTCTTTATGTATTGGGGAGGTATAAAGAGTCGAAAGACGAGTTTTTGTTGGCATTG 960
Query 1140 GAAGCTGCTGAGTCGGGCGGGAACCAATGGGCTTATTTGCTTCCTCAGATTTATGTCAAT 1199
|||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 961 GAAGCTGCGGAGTCCGGTGGGAATCAATGGGCTTACTTGCTTCCTCAGATTTATGTCAAT 1020
Query 1200 CTCGGTATCGCGCTTGAAGGCGAAGGTATGGTTTTGAGTGCTTGTGAGTATTATAGAGAA 1259
||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTCGGTATCTCTCTTGAAGGTGAAGGTATGGTTTTGAGTGCTTGTGAGTATTATAGAGAG 1080
Query 1260 GCTGCGATTCTATGTCCTACGCATTTTAGAGCCTTGAAGCTTCTAGGTAGTGCGT-TGTT 1318
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 1081 GCTGCGATTCTTTGTCCAACGCATTATAGAGCCTTGAAGCTTCTAGGTAGTGC-TCTGTT 1139
Query 1319 CGGTGTAGGAGAGTATAGAGCAGCGGTTAAGGCCTTAGAGGAAGCTATATACTTGAAACC 1378
|||||||||||||||||||| || || ||||| ||||||||||||||||| ||||||||
Sbjct 1140 TGGTGTAGGAGAGTATAGAGCTGCTGTGAAGGCTTTAGAGGAAGCTATATATTTGAAACC 1199
Query 1379 GGATTACGCAGATGCTCATTGTGATTTAGCTTCGTCT-TTGCATTCAATGGGTGAAGATG 1437
|||||| || ||||| ||||||||||| |||||||| || ||| |||||||||| ||||
Sbjct 1200 GGATTATGCTGATGCGCATTGTGATTTGGCTTCGTCGCTT-CATGCAATGGGTGAGGATG 1258
Query 1438 AGAGAGCTATCGAGGTTTTCCAGAGAGCTATAGACTTGAAACCTGGCCATGTTGATGCTC 1497
|||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1259 AGAGGGCTATTGAGGTTTTCCAGAGAGCTATAGATTTGAAACCTGGCCATGTCGATGCTC 1318
Query 1498 TGTATAATCTTGGTGGGCTTTACATGGATTTAGGTAGGTTTCAGAGAGCTTCGGAGATGT 1557
| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1319 TTTATAACCTCGGTGGGCTTTACATGGATTTGGGTAGGTTTCAGAGAGCTTCGGAGATGT 1378
Query 1558 ACACTAGGGTCTTAACGGTATGGCCTAACCATTGGCGTGCTCAGCTTAACAAGGCGGTTT 1617
||||||| || ||| |||| |||||||||||||||||||| || || |||||||| || |
Sbjct 1379 ACACTAGAGTTTTAGCGGTGTGGCCTAACCATTGGCGTGCACAACTCAACAAGGCTGTGT 1438
Query 1618 CTTTGTTAGGTGCTGGAGAGACCGAAGAAGCTAAACGAGCGCTT-AA-GGAAGCACTCAA 1675
| ||||| || ||||||||||||||||||||||| || | |||| || ||| || || ||
Sbjct 1439 CCTTGTTGGGCGCTGGAGAGACCGAAGAAGCTAAGCG-G-GCTTTAAAGGAGGCCCTGAA 1496
Query 1676 ACTGACAAACCGGGTTGAATTGCATGATGCAATATCTCATTTGAAACATTTGCAGAAGAA 1735
| |||||||||| ||||| ||||| |||||| |||||||| ||||||| |||||||||||
Sbjct 1497 AATGACAAACCGAGTTGAGTTGCACGATGCAGTATCTCATCTGAAACAGTTGCAGAAGAA 1556
Query 1736 AAAGGGTAAAAACAATGGAAATGGTAATGGTGGA-GAAGGTCCGTTCATCGTCGTGGAAC 1794
||||| | |||| || |||||| || | || ||||||||||| || || |||||||
Sbjct 1557 AAAGG-TCAAAA-AA-GGAAATAGTGC-GAACGAAGAAGGTCCGTTTATTGTTGTGGAAC 1612
Query 1795 CTTCCAAGTTCAAGACTGTGGGTGAGAAGACGACTTTGAGGCCGGATTTAGCCACAGCCC 1854
||||||| |||||||| || || |||||||| ||||| ||||| |||||||||| ||| |
Sbjct 1613 CTTCCAAATTCAAGACGGTAGGCGAGAAGACTACTTTAAGGCCAGATTTAGCCATAGCTC 1672
Query 1855 TTCAAATTAGAGCCTTTCAGAGGGTTACAAGGCT-TGGGAAATGCGATGTGGAGGC-TGT 1912
|||||||||||||||| ||||| ||||||||||| ||| ||||||||||| || || | |
Sbjct 1673 TTCAAATTAGAGCCTTCCAGAGAGTTACAAGGCTGTGG-AAATGCGATGTTGAAGCAT-T 1730
Query 1913 ACGAA-AGGAGATGAGAGACAATGATGTTCCTGTATCGTATTCCGGTAGTGGTG-GACCG 1970
| ||| || ||||||||||||| |||||||||||||| |||||||| | ||| | | ||
Sbjct 1731 AAGAAGAG-AGATGAGAGACAACGATGTTCCTGTATCCTATTCCGGCAATGGAGTGCCC- 1788
Query 1971 ACGAAATCTATTCGGAAACCTAATTTAGAGGAGATTCTACGGCGTCTGCTC-A-GCTCCT 2028
|| |||||||| ||| ||| || ||||| |||||||| |||||||| || | | ||||
Sbjct 1789 ACAAAATCTATAAGGAGACCAAACTTAGAAGAGATTCTCCGGCGTCTACTTGATG-TCCT 1847
Query 2029 TGAAACCTGACACTTTTCAAGGAGCCATCAAGGCTATAAACGAGAAAATCCTCGCGCTTC 2088
||||||||| ||||| |||||||| || ||||| |||||||||||||||||| || | |
Sbjct 1848 -GAAACCTGAAACTTTCCAAGGAGCGATTAAGGCCATAAACGAGAAAATCCTCTCGGTGC 1906
Query 2089 TCGATGATTCAGGGTCGGGAAGAGTTGATATGGGTATGTTTTACGCTGTGATTGCTCCTT 2148
||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||
Sbjct 1907 TCGATGATTCAGGGTCGGGAAGAGTTGATTTGGGAATGTTTTATGCGGTGATTGCTCCTT 1966
Query 2149 TATGCGGTGGACATTCC-GACAAAAGGAAAAGAGTTGCTTTTGATGCGCTTCTTTGGAGA 2207
|||| ||||| ||| || |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1967 TATGTGGTGGCCAT-CCAGACAAAAGGAAAAGAGTTGCATTTGATGCGCTTCTTTGGAAA 2025
Query 2208 CCTGTAAACGAAGGAAGCTCTCAGATTACAAAAACGGATGCAGTCAAATACATTAAACTG 2267
|| | ||||| ||||||||||||||||||||||| ||| || ||||||||||| |||||
Sbjct 2026 CCAGAAAACGCAGGAAGCTCTCAGATTACAAAAATGGAAGCCGTCAAATACATCAAACTC 2085
Query 2268 TTGAGAGCTATTTACATTCCATCACATGGAATGAGTGAAATGTTAGAAGTTCACGGAGAA 2327
||||||||||| ||||| || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct 2086 TTGAGAGCTATCTACATACCGTCACAAGGAATGAGCGAAATGTTAGAAGTTCATGGAGAA 2145
Query 2328 GAA-GAAGCTGAATCCT-CAGTGACAGTGACATTTAATCAGTTTTTAGCCATGTTCGACG 2385
| || ||| | || | | || || ||||| || |||||| ||| |||| ||| |
Sbjct 2146 -ACTGA---TGA-TACTTC-G--ACGGTAACATTCAACCAGTTTCTAGAGATGTACGATG 2197
Query 2386 ATCCAGATTGGGGATTTGGTATAATGTCTAC-GATCCTTAAACTGGAGGCAA-ACGATAG 2443
|| |||| |||||||||||||| ||||| || | | ||||||| || ||| | |||||
Sbjct 2198 ATTCAGAGTGGGGATTTGGTATCATGTCGACTGTTT-TTAAACTCGAAACAAGA-GATAG 2255
Query 2444 AAACCGTCATGGAAACCAAGTTTGCTCGGTTTGTCGGTACCCGGTAATCGGATCCCGGTT 2503
|| || || || ||||| || || ||||||||||| || ||| | ||||| || ||||
Sbjct 2256 GAATCGACACGGGAACCAGGTCTGTTCGGTTTGTCGATATCCGATTATCGGGTCTCGGTA 2315
Query 2504 TAAGGAAGTGAAAGCCCGGTTTAGTTTGTGTAACCAGTGTTACGGTGAAGGGAAGGTTCC 2563
||||||||||||| | ||||||| | |||||||| |||||| | |||||||| ||||
Sbjct 2316 TAAGGAAGTGAAAACAGGGTTTAGCCTCTGTAACCAATGTTACAGCGAAGGGAAAATTCC 2375
Query 2564 TCCTTCGTTTAAACA--AG-AGGAATACAAGTTCCGAGAATATGAGAGTGAAGCTG-AAG 2619
||| |||||||||| || ||||||| || ||| |||| |||| |||||||| || |||
Sbjct 2376 TCCAACGTTTAAACAGCAGGAGGAATATAAATTCAGAGAGTATGGGAGTGAAG-TGGAAG 2434
Query 2620 CCATGAAAGCTAAGTGTGTATGTTTCTCGATGCAATCTCATAAAAAAGCGATTGCCACTT 2679
||||||||||||||||| | ||||| || ||||| |||||||||||| | || |||||||
Sbjct 2435 CCATGAAAGCTAAGTGTATTTGTTTTTCAATGCAGTCTCATAAAAAA-CAATAGCCACTT 2493
Query 2680 GA 2681
||
Sbjct 2494 GA 2495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109242822660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5