BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05160.1
Length=2078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470506 jgi|Araly1|470506|fgenesh2_kg.1__460__AT1G05160.1 2961 0.0
Ahg482171 jgi|Araly1|482171|fgenesh2_kg.4__1231__AT2G32440.1 1096 0.0
> Ahg470506 jgi|Araly1|470506|fgenesh2_kg.1__460__AT1G05160.1
Length=2014
Score = 2961 bits (1603), Expect = 0.0
Identities = 1868/1991 (94%), Gaps = 37/1991 (2%)
Strand=Plus/Plus
Query 69 CTTCTTACTCGAAAGTCGAAACCCTTGTGAGAGAACTTGGTGATGCCGAAGATGGTAACT 128
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 19 CTTCTTACTCGAAAGTCGAAACCCTTGTGAGAGAACTTGGAGATGCCGAAGAAGGTAACT 78
Query 129 CCGACGAGTACTGGAACCAGTTTATTGAGCCA-TTCGCAGAATCTGA-GG----GTCAAG 182
|||||||||||||| ||| ||||||||||| | || ||||||||||| || ||||||
Sbjct 79 CCGACGAGTACTGGGACCGGTTTATTGAGCTATTTTGCAGAATCTGAGGGTCAAGTCAAG 138
Query 183 TGGTCTCTTCTCTCTCATTGCTTTATCTTAATTAAGACTTTCCAGGTATTGAGTAATGTA 242
|||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||
Sbjct 139 TGGTCTCTCCTCTCTCATTGCCTTATCTTAATTACGACTTTCCAGGT-GTGAGTAATGTT 197
Query 243 ATACACGTATCTACATGAAGATGAGGATATAAATATCCATTTATGAGAAAAGaaaaaaaG 302
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 198 ATACACGTATCTACATGAAGAGGAGGATATAAATATCCATTTATGAGAAAAG-AAAAAAG 256
Query 303 G-GACAAACAAAAGTTGGCAAGTTTAACTAAGTG--AAAAGTCTATGGCGGAGACAACGA 359
| ||||| | ||||||| ||||| ||||||||| ||||| |||||||||| |||||||
Sbjct 257 GCTACAAA-ATAAGTTGGGAAGTTGAACTAAGTGAAAAAAG-CTATGGCGGAAACAACGA 314
Query 360 GTTGGATCCCAGTATGGTTTCCTCTGATGGTGTTGGGATGTTTTGGTCTGAATTGGTTGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GTTGGATCCCAGTATGGTTTCCTCTGATGGTGTTGGGATGTTTTGGTCTGAATTGGTTGG 374
Query 420 TCAGGAAGGTGAATGTGTGGCTCTATGAGTCCAGCCTTGGGGAGAACAGGCACTATCTGC 479
| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TTAAGATGGTGAATGTGTGGCTCTATGAGTCCAGCCTTGGGGAGAACAGGCACTATCTGC 434
Query 480 CACCAGGTGATTTGGGTTGGCCTTTCATTGGCAACATGTTGTCTTTTCTCAGAGCTTTCA 539
| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 435 CGCCAGGTGATTTGGGTTGGCCTTTCATTGGCAACATGTTGTCGTTTCTCAGATCGTTCA 494
Query 540 AGACTTCTGACCCTGACTCCTTCACTC-GCACTTTAATCAAAAGGTATGGACCTAAAGGT 598
|||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||||||
Sbjct 495 AGACTTCTGACCCTGATTCCTTCAC-CAGCACTTTCATCAAAAGGTATGGACCTAAAGGT 553
Query 599 ATATATAAAGCACACATGTTCGGGAACCCAAGTATAATAGTAACAACATCAGACACTTGC 658
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 554 ATCTATAAAGCACACATGTTCGGGAACCCAAGTATAATAGTAACAACACCAGACACTTGC 613
Query 659 CGGCGTGTGCTGACAGACGATGATGCGTTCAAGCCAGGTTGGCCAACATCTACAATGGAA 718
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 614 CGGCGTGTGCTGACAGATGATGATGCATTCAAGCCAGGTTGGCCAACATCTACAATGGAA 673
Query 719 CTCATTGGAAGGAAGTCATTCGTTGGTATCTCTTTCGAGGAACACAAGCGTCTCAGGCGT 778
||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||
Sbjct 674 CTCATTGGAAGGAAGTCATTCATTGGTATCTCATTCGAGGAACACAAGCGGCTCAGGCGC 733
Query 779 TTGACTGCTGCTCCAGTCAATGGCCATGAAGCCCTCTCTACTTATATACCGTACATTGAA 838
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 734 TTGACTGCTGCTCCAGTCAATGGCCATGAAGCCCTCTCTACTTACATACCGTACATTGAA 793
Query 839 GAAAACGTTATTACTGTTCTGGACAAGTGGACCAAAATGGGAGAGTTCGAGTTCTTGACT 898
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 794 GAAAACGTTATTACCGTTCTTGACAAGTGGACTAAAATGGGAGAGTTCGAGTTCTTGACT 853
Query 899 CATCTGCGTAAGCTCACCTTTAGGATCATCATGTACATCTTTCTCAGCTCTGAGAGTGAG 958
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 CATCTGCGTAAGCTTACCTTTAGGATCATCATGTACATCTTTCTCAGCTCTGAGAGTGAG 913
Query 959 AATGTAATGGATGCATTGGAACGAGAATATACAGCTCTTAACTATGGGGTTCGAGCAATG 1018
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 914 AATGTAATGGATGCATTGGAACGAGAATATACAGCTCTTAACTATGGAGTTCGAGCAATG 973
Query 1019 GCAGTCAATATTCCTGGATTTGCTTATCATAGAGCACTCAAGGCGAGGAAAACACTTGTA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 GCAGTCAATATTCCTGGATTTGCTTATCATAGAGCACTCAAGGCGAGGAAAACACTTGTA 1033
Query 1079 GCTGCCTTTCAGTCCATAGTGACTGAGCGCAGAAATCAAAGGAAGCAGAACATTTTATCA 1138
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1034 GCTGCCTTTCAGTCCATAGTGACTGAGCGCAGAAATCAAAGGGAGCAGAACATTTTACCA 1093
Query 1139 AATAAGAAAGATATGTTAGACAATCTTCTTAATGTTAAAGATGAAGATGGAAAAACTTTG 1198
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 1094 AATAAGAAAGATATGTTAGACAATCTTCTTAATGTTAAAGATGAAGAGGGAAGAACATTG 1153
Query 1199 GATGACGAAGAGATTATCGATGTTCTTCTGATGTATCTTAATGCCGGTCATGAATCCTCT 1258
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GATGACGAAGAAATTATCGATGTTCTTCTGATGTATCTTAATGCCGGTCATGAATCCTCT 1213
Query 1259 GGCCACACCATTATGTGGGCTACCGTTTTTCTACAAGAACACCCTGAGGTTCTACAAAGA 1318
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 1214 GGCCACACCATTATGTGGGCTACCATTTTTCTACAAGAACACCCTGAGTTTCTTCAAAGG 1273
Query 1319 GCAAAGGC---TGAACAAGAAATGATCCTGAAAAGTAGGCCTGAAGGTCAAAAAGGTCTA 1375
||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1274 GCAAAGGTAAATGAACAAGAAATGATCCTTAAAAATAGGCCTGAAGGTCAAAAAGGTCTA 1333
Query 1376 TCTCTAAAAGAAACCCGGAAAATGGAATTCTTATCGCAGGTTGTCGATGAGACACTTCGA 1435
||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1334 ACTCTAAAAGAAACCCGGCAAATGGAGTTCTTATCGCAGGTTGTAGATGAGACACTTCGA 1393
Query 1436 GTCATAACATTCTCACTCACTGCTTTTCGAGAGGCAAAGACTGACGTTGAAATGAATGGC 1495
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1394 GTGATAACATTCTCACTCACTGCTTTTCGGGAGGCAAAGACTGACGTCGAAATGAATGGC 1453
Query 1496 TATTTGATCCCAAAAGGTTGGAAGGTTTTGACATGGTTTAGGGATGTCCACATCGACCCT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1454 TATTTGATCCCAAAAGGTTGGAAGGTTTTGACATGGTTTAGGGATGTCCACATTGACCCT 1513
Query 1556 GAAGTCTTTCCAGATCCAAGAAAATTTGATCCTGCTAGATGGGATAATGGTTTCGTACCA 1615
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1514 GAAGTCTATCCGGATCCAAGAAAATTTGATCCTTCTAGATGGGATAATGGTTTCGTACCA 1573
Query 1616 AAAGCTGGTGCGTTCCTTCCTTTTGGTGCTGGAAGCCATCTATGCCCGGGAAATGATCTG 1675
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1574 AAAGCTGGTGCGTTCCTTCCTTTTGGTGCTGGAAGCCATCTATGCCCAGGAAATGATCTC 1633
Query 1676 GCTAAGCTCGAGATTTCAATTTTTCTTCATCATTTCCTCCTCAAATATCAGGTGAAACGG 1735
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1634 GCGAAGCTCGAGATATCAATTTTTCTTCATCATTTCCTCCTGAAATATCAGGTGAAACGG 1693
Query 1736 AGCAACCCCGAA-TGTCCAGTGATGTATCTGCCTCATACCAGACCAACTGATAATTGCTT 1794
||||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1694 AGCAACCCC-AAGTGTCCAGTGATGTATTTGCCTCACACCAGACCAACTGATAATTGCTT 1752
Query 1795 GGCAAGAATTAGTTATCAGTAAAACATG-G-TTTTCATCTTCTCCGTTAAGTTCTAGTGA 1852
||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |||
Sbjct 1753 GGCAAGAATTAGTTATCAGCAAAACATTAGATTTTCATCTTCTCCGTTAAGTTCTAATGA 1812
Query 1853 AATGCCGTCAAGTTTGGTTTATCAGTTATAGGAGTTCGTTAACTCTTAAGTAAATCAATC 1912
||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |||||
Sbjct 1813 GATGCCGTTAAGTTTGGTTTATCAGTTATAG-AGTTCGTTAACTCTTTAGTAAAACAATC 1871
Query 1913 ATTGTCaaaaaaaaaaG--AAAAGT-TAAACGGTCT-TGAGAC-TGTCtttttttttCTC 1967
|||||||||| ||||| |||| | || | | | | | || | | ||||||||||||
Sbjct 1872 GTTGTCAAAAATAAAAGTTAAAA-TATATATA-TATAT-ATACAT-T-TTTTTTTTTCTC 1926
Query 1968 GTTCTGAAACTTCATCAGACTTACATACTCTGTTCCATGAAACAGAGCTTTGTTGTGTTC 2027
| | |||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1927 -T-C-GAAACTTCATCAGACT-ACTTACTCTGTTCCATGAAACAGAGCTTTGTTGTGTTC 1982
Query 2028 ATTTGCTATAA 2038
|||||||||||
Sbjct 1983 ATTTGCTATAA 1993
> Ahg482171 jgi|Araly1|482171|fgenesh2_kg.4__1231__AT2G32440.1
Length=1791
Score = 1096 bits (593), Expect = 0.0
Identities = 1184/1462 (81%), Gaps = 70/1462 (5%)
Strand=Plus/Plus
Query 374 TGGTTTCCTCTGATGGTGTTGGGA-TGTTTTGGTCTGAATTGGTTGGTCAGGAAG-GTGA 431
||||| ||| ||||||| |||||| || |||| | |||| ||| || | | | || ||||
Sbjct 124 TGGTTCCCTTTGATGGTTTTGGGATTG-TTTGTTTTGAAATGGGTGTTAAAG-AGTGTGA 181
Query 432 ATGTGTGGCTCTATGAGTCCAGCCTTGGGGAGAACAGGCACTATCTGCCACCAGGTGATT 491
|||| ||| | |||||||||| ||||| ||||| | ||||||||||||||||||||||
Sbjct 182 ATGTTTGGATTTATGAGTCCAAACTTGGTGAGAAAAAACACTATCTGCCACCAGGTGATT 241
Query 492 TGGGTTGGCCTTTCATTGGCAACATGTTGTCTTTTCTCAGAGCTTTCAAGACTTCTGACC 551
|||| ||||| |||| |||||||||| ||| ||||| ||||||||||| || ||||| |
Sbjct 242 TGGGATGGCCAATCATAGGCAACATGTGGTCCTTTCTTAGAGCTTTCAAAACATCTGATC 301
Query 552 CTGACTCCTTCACTCGCACT-TTA-ATCAAAAGGTATGGACCTAAAGGTATATATAAAGC 609
|||| ||||||| || || | || |||| ||||||||| | || ||||| ||||||||
Sbjct 302 CTGAATCCTTCA-TC-CAATCCTACATCACAAGGTATGGGCGTACTGGTATTTATAAAGC 359
Query 610 ACACATGTTCGGGAACCCAAGTATAATAGTAACAACATCAGACACTTGCCGGCGTGTGCT 669
||||||||| ||| ||||| || || ||||||||||| |||| ||||| || || || ||
Sbjct 360 ACACATGTTTGGGTACCCATGTGTACTAGTAACAACACCAGAGACTTGTCGACGAGTTCT 419
Query 670 GACAGACGATGATG-CGTTCAAGC-CAGGTTGGCCAACATCTACAATGGAACTCATTGGA 727
||||| ||||||| | ||| | | ||||||||||| |||||| ||| ||||||||||
Sbjct 420 AACAGATGATGATGCCTTTC-A-CATAGGTTGGCCAAAATCTACCATGAAACTCATTGGC 477
Query 728 AGGAAGTCATTCGTTGGTATCT-CTTTCGAGGAACACAAGCGTCTCAGGCGTTTGACTGC 786
|||||||| || || ||||||| |||| || ||||||||||| ||||||||||||||| |
Sbjct 478 AGGAAGTCCTTTGTCGGTATCTCCTTT-GAAGAACACAAGCGGCTCAGGCGTTTGACTTC 536
Query 787 TGCTCCAGTCAATGGCCATGAAGCCCTCTCTACT-TATATACCGTACATTGAAGAAAAC- 844
|||||| |||||||||| |||||| |||||| | || |||| | |||||||| ||||
Sbjct 537 TGCTCCTGTCAATGGCCCTGAAGCTCTCTCT-GTCTACATACAATTCATTGAAG-AAACT 594
Query 845 GTTATTACTGTTCTGGACAAGTGGACCAAAATGGGAGAGTTCGAGTTCTTGA-CTCATCT 903
|||||||||| ||| || || ||| ||||||||||||| |||||||||| | ||||| |
Sbjct 595 GTTATTACTGATCTAGAAAAATGGTCCAAAATGGGAGAAATCGAGTTCTT-ATCTCATTT 653
Query 904 GCGTAAGCTCACCTTT-AGGATCATCATGTACATCTTTCTCAGCTCTGAGAGTGAGAATG 962
||||||||| || ||| ||| |||| |||||||| ||||||||| |||||||||| |||
Sbjct 654 GCGTAAGCTTACGTTTAAGG-TCATTATGTACATATTTCTCAGCAGTGAGAGTGAGCATG 712
Query 963 TAATGGATGCATTGGAACGAGAATATA-CAGCTCTTAACTATGGGGTTCGAGCAAT-GGC 1020
| ||||||||||||||||| ||||||| || | ||||||||||| ||||||||||| ||
Sbjct 713 TCATGGATGCATTGGAACGGGAATATACCAAC-CTTAACTATGGAGTTCGAGCAATGGGT 771
Query 1021 AGTCAATATTCCTGGATTTGCTTATCATAGAGCACTCAAGGCGAGGAAAACA-CTTGTAG 1079
| | ||| ||||||| ||||||||||||||||| | ||||| ||||||| | |||||||
Sbjct 772 A-TTAATCTTCCTGGGTTTGCTTATCATAGAGCTTTGAAGGCAAGGAAAA-AGCTTGTAG 829
Query 1080 CTGCCTTTCAGTCCATAGTGACTGAGCGCAGAAATCAAAGGAAGCAGAACATTTTATCAA 1139
| ||||||||||||||||||||| | || |||||||||||||||||||| |||| ||| |
Sbjct 830 CCGCCTTTCAGTCCATAGTGACTAACCGAAGAAATCAAAGGAAGCAGAATATTTCATCCA 889
Query 1140 ATAAG-AAAGATATGTTAGACAATCTTCTTA-ATGTTAAAGATGAAGATGGAAAAACTTT 1197
|| || ||||| ||| | || |||| | || |||||||||||||| | |||| | |||
Sbjct 890 AT-AGAAAAGACATGCTGGATAATC-TAATAGATGTTAAAGATGAAAACGGAAGAGTTTT 947
Query 1198 GGATGACGAAGAGATTATCGATGTTCTT-CTGATGTATCTTAATGCCGGTCATGAATCCT 1256
|||||||| || ||||| || || || |||||||||||||||| ||||||||||| |
Sbjct 948 AGATGACGAGGAAATTATTGACCTT-TTGTTGATGTATCTTAATGCGGGTCATGAATCTT 1006
Query 1257 CTGGCCACAC-CATTATGTGGGCTACCGTTTTTCTACAAGAACACCCTGAGGTTCTAC-A 1314
|||| ||| | || ||||||||||||| |||| | |||||||||||||| |||||| |
Sbjct 1007 CTGGACAC-CTCACTATGTGGGCTACCATTTTGATGCAAGAACACCCTGAAATTCTACAA 1065
Query 1315 AAGAGCAAAGGCTGAACAAGAAATGATCCTGAAAAGTAG-GC-CTGAAGGTCAAAAAGGT 1372
||| ||||||| || ||||| | |||| | |||| || || | | || | | || ||
Sbjct 1066 AAG-GCAAAGGAAGAGCAAGAGAGGATCGTAAAAAACAGAGCGCCG--GGAC-AGAA-GT 1120
Query 1373 CT-ATCTCTAAAAGAAACCCG-GAAAATGGAAT-TCTTATCGCAGGTTGTCGATGAGACA 1429
| | | || ||||| || || | ||||||| | |||| || |||||| | |||||||||
Sbjct 1121 -TGA-CGCTTAAAGAGACACGTG-AAATGGAGTATCTT-TCTCAGGTTATTGATGAGACA 1176
Query 1430 CTTCGAGTCATAACATTCTCACTCACTGCTTTTCGAGAGGCAAAGACTGACGTTGAAAT- 1488
|||||||| ||||||||||| || || ||||| || || ||||||| |||||| ||||
Sbjct 1177 CTTCGAGTAATAACATTCTCTCTTACGGCTTTCCGGGAAGCAAAGAGTGACGTCCAAATA 1236
Query 1489 GAATGGCTATTTGATCCCAAAAGGTTGGAAGGTTTTGACATGGTTTAGGGATGTCCACAT 1548
|| ||||||| | || |||||||| ||||||||| |||| ||||||||| | ||||| |
Sbjct 1237 GA-TGGCTATATCATTCCAAAAGGCTGGAAGGTTCTGACTTGGTTTAGGAACGTCCATTT 1295
Query 1549 CGACCCTGA-AGTCTTTCCAGATCCAA-GAAAATTTGATCCTGCTAGATGGGATAATGGT 1606
||||| || | ||| || ||||||| |||| ||||||||| | |||||| | ||
Sbjct 1296 GGACCCAGAGA-TCTACCCGGATCCAAAGAAA-TTTGATCCTTCAAGATGGCAG---GGA 1350
Query 1607 TTCGTACCAAAAGCTGGTGCGTTCCTTCCTTTTGGTGCT-GGAAGCCATCTATGCCCGGG 1665
| | ||||||||| || | ||||||||||||||| | ||||||||||| ||||| ||
Sbjct 1351 TACACACCAAAAGCAGGCACATTCCTTCCTTTTGGTT-TAGGAAGCCATCTCTGCCCTGG 1409
Query 1666 AAATGATCTGGCTAAGCTCGAGATTTCAATTTTTCTTCATCATTTCCTCCTCAAATATCA 1725
||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1410 AAACGATCTTGCAAAGCTCGAGATTTCCATTTTTCTTCATCATTTCCTCCTCAAATACCG 1469
Query 1726 GGT-GAAACGGAGCAACCCCGAATGTCCAGTGATGTATCT-GCCTCATAC-CAGACC-AA 1781
||| |||| ||||||| || | ||||| ||||||| ||| |||||| | | |||| ||
Sbjct 1470 GGTAGAAA-GGAGCAATCCAGGGTGTCCGGTGATGT-TCTTGCCTCACAATC-GACCCAA 1526
Query 1782 CTGATAATTGCTTGGCAAGAAT 1803
||||||||||| ||||||||
Sbjct 1527 A-GATAATTGCTTAGCAAGAAT 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78161182740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5