BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05170.2
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311603 jgi|Araly1|311603|fgenesh1_pm.C_scaffold_1000383 2078 0.0
Ahg933809 jgi|Araly1|933809|scaffold_401797.1 1149 0.0
> Ahg311603 jgi|Araly1|311603|fgenesh1_pm.C_scaffold_1000383
Length=1224
Score = 2078 bits (1125), Expect = 0.0
Identities = 1193/1226 (97%), Gaps = 4/1226 (0%)
Strand=Plus/Plus
Query 318 ATGTCTG-CGAAGATCAAAGGAGAGTATTCTTCTAGAAGCTTCGTATCGAGAAAATGGAC 376
||||| | |||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTC-GACGAAGAACAAAGGAGAATATTCTTCTAGAAGCTTCGTATCGAGAAAATGGAC 59
Query 377 GATATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCAATCGGATGTGGAA 436
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 GATATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCGATCGGATGTGGAA 119
Query 437 TATTCCGGAATCTAAAGGCATGTCTCATCCATCTGTAACCGAAGCTGAGAGATTGAAGCT 496
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 120 TATTCCGGAATCTAAAGGCATGTCTCGTCCATCTGTAACCGAAGCTGAGAGATTGAAACT 179
Query 497 GGTCTCTGAAGGCTGCAATCCAAAAGCTCTTTACCAGAAAGAAGTCAAAAGAGATCCTCA 556
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 GATCTCTGAAGGCTGCAATCCAAAAACTCTTTACCAGAAAGAAGTCAAAAGAGATCCTCA 239
Query 557 GGCTTTGTTTGGAGAAGTAGCCAATACACATATTGCATTACAGACATTGGATAAGACCAT 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGCTTTGTTTGGAGAAGTAGCCAATACACATATTGCATTACAGACATTGGATAAGACCAT 299
Query 617 TTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGGTCAGTTCAGGAATCTTTACAAAACGG 676
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TTCAAGCTTAGAGATGGAGTTAGCTGCAGCTAGGTCAGTTCAGGAATCTTTACAAAACGG 359
Query 677 TGCTCCTTTATCAGATGATATGGGGAAGAAGCAACCTCAGG-AACAGAGACGGTTTTTGA 735
||||||| |||||||||||||||||||||||||||| | || || |||||||||||||||
Sbjct 360 TGCTCCTGTATCAGATGATATGGGGAAGAAGCAACCGCTGGGAA-AGAGACGGTTTTTGA 418
Query 736 TGGTCGTTGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAAGAGATTCTATTCGAGCAA 795
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGGTCGTCGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAAGAGATTCTATTCGAGCAA 478
Query 796 CTTGGATGCCTCAAGGTGAAAAAAGGAAGAGACTAGAAGAGGAGAAGGGGATTATCATCC 855
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGTGGATGCCTCAAGGTGAAAAAAGGAAGAGACTAGAAGAGGAGAAGGGGATTATCATCC 538
Query 856 GGTTTGTCATTGGTCACAGTGCCACGACCGGGGGAATTCTAGATCGAGCTATAGAAGCTG 915
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GATTCGTCATTGGTCACAGTGCCACGACCGGGGGAATTCTAGATCGAGCTATAGAAGCTG 598
Query 916 AGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATGTTGAAGGGTACCTAGAGTTGT 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATGTTGAAGGGTACCTAGAGTTGT 658
Query 976 CAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCGATGTGGGATGCAGATTTCTATG 1035
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 CAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCCATGTGGGATGCAGATTTCTATG 718
Query 1036 TCAAAGTAGATGATGATGTTCATGTCAATATAGCAACTCTTGGGGAAACTCTTGTTAGAC 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 TCAAAGTAGATGATGATGTTCATGTCAATATAGCAACTCTTGGGGAAACTCTTGTCAGAC 778
Query 1096 ACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAA 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAA 838
Query 1156 AAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACT 1215
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 839 AAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAATTTGGTGAAAATGGGAACAAATACT 898
Query 1216 TCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGACTTGGCTTCTTATATATCAA 1275
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCCGTCATGCTACTGGACAATTATACGCCATTTCAAGGGACTTGGCTTCTTATATATCAA 958
Query 1276 TCAATCAGCATGTTCTTCACAAGTATGCGAACGAAGATGTTTCGCTAGGAGCTTGGTTTA 1335
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 959 TCAATCAGCATGTTCTTCACAAGTATGCGAACGAAGATGTTTCGTTAGGAGCTTGGTTTA 1018
Query 1336 TCGGGATTGATGTTAAACACATTGATGATAGAAGATTATGCTGCGGAACTCCTCCTGATT 1395
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1019 TTGGGATTGATGTTAAACACATTGATGACAGAAGATTATGCTGCGGAACTCCTCCTGATT 1078
Query 1396 GCGAATGGAAAGCACAAGCTGGAAACATCTGTGTAGCATCATTCGACTGGAGCTGCAGCG 1455
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 GTGAATGGAAAGCACAAGCTGGAAACATCTGTGTAGCATCATTCGACTGGAGCTGCAGTG 1138
Query 1456 GAATCTGCAGATCCGCAGATCGCATCAAAGAGGTTCATAGACGTTGCGGTGAAGGTGAAA 1515
||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 1139 GAATCTGCAGATCAGCAGATCGCATCAAAGAGGTTCATCGACGTTGTGGTGAAGGCGAAA 1198
Query 1516 AGGCTCTTTGGAGTGCCACGTTTTGA 1541
||||||||||||||||||| ||||||
Sbjct 1199 AGGCTCTTTGGAGTGCCACATTTTGA 1224
> Ahg933809 jgi|Araly1|933809|scaffold_401797.1
Length=1270
Score = 1149 bits (622), Expect = 0.0
Identities = 1050/1252 (84%), Gaps = 48/1252 (4%)
Strand=Plus/Plus
Query 317 AATGTCTG-CGAAGATCAAAGGAGAG---TATTCTTCTAGAAGCTTCGTAT-CGAGAAAA 371
|||||| | ||||||||||||||||| | ||| || |||||||| |||| | || |||
Sbjct 20 AATGTC-GACGAAGATCAAAGGAGAGCTTTTTTCGTCCAGAAGCTTAGTATCCAAG-AAA 77
Query 372 TGGACGA-TATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCAATCGGAT 430
||||| | | ||||||||||| || ||||||||| | || || |||||||| || ||||
Sbjct 78 TGGAC-ATTTTTACTCTGCTTTGGGAGCTTCTGCTTTGGGATACTCTTCACCGATAGGAT 136
Query 431 GTGGAATATTCCGGAATCTAAAGGCATGTCTC-ATCCATCTGT-A--ACCGAAGCTGAGA 486
||||| |||||| || ||||||| |||||||| | |||||||| | || |||||||| |
Sbjct 137 GTGGATTATTCCAGAGTCTAAAGACATGTCTCGA-CCATCTGTAAGTACAGAAGCTGAAA 195
Query 487 GA-TTGAAGCTGGTCTCTGAAGGCTGCAAT-CCAAAAGCTCTTTACCAGAAAGAAGTCAA 544
|| || |||||| ||||||| ||||| || |||||| ||| |||||||||||||| ||
Sbjct 196 GACTT-AAGCTGATCTCTGAGGGCTGTGATCCCAAAA-ATCTCTACCAGAAAGAAGT-AA 252
Query 545 A-AGAGATCCTCAGGCTTTGTTTGGAGAAGTAGCCAATACACATATTGCAT-TACAGACA 602
| | ||||||||||||||| |||||||||| |||| || |||| ||| | ||||||||
Sbjct 253 ATCGTGATCCTCAGGCTTTGCTTGGAGAAGTTTCCAAGACTCATAATGC-TATACAGACA 311
Query 603 TTGGATAAGACCATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGGTCAGTTCAGGAA 662
|||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||
Sbjct 312 TTGGATAAGACCATTTCAAGTTTAGAGATGGAGTTAGCCGCAGCAAGATCAGCACAGGAG 371
Query 663 TCTTTACA-AAACGGTGCTCCTTTATCAG-ATGATATGGGGAAGAAGC-A--ACCTCAGG 717
||||| | ||||||||||||| | || | ||||| ||| |||||||| | ||| ||
Sbjct 372 TCTTT-GATAAACGGTGCTCCTATGTC-GAATGATGTGGAGAAGAAGCAATTACC-GGGG 428
Query 718 AACAGAGACGGTTTTTGATGGTCGTTGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAA 777
|| | ||||||| ||||||||| || ||||||||||| |||||||||||| |||||||||
Sbjct 429 AA-A-AGACGGTATTTGATGGTTGTAGGGATTAATACTGCTTTTAGTAGCCGAAAGAGAA 486
Query 778 GAGATTCTATTCGAGCAACTTGGATGCC-TCAAGGTGAAAAAAGGAAG-AGACTAGAAGA 835
|||||||| ||||| ||||||||||||| || |||||| ||||| ||| || |||| ||
Sbjct 487 GAGATTCTGTTCGAACAACTTGGATGCCTTC-AGGTGAGAAAAGAAAGAAG-TTAGAGGA 544
Query 836 GGAGAAGGGGATTATCATCCGGTTTGTCATTGGTCACAGTGCCA-CGACCGGGGGAATTC 894
|||||||| ||||| || |||||||| |||||||| ||||||| || |||| |||||||
Sbjct 545 AGAGAAGGGAATTATTATACGGTTTGTGATTGGTCATAGTGCCACCG-CCGGCGGAATTC 603
Query 895 TAGATCGAGCTATAGAAGCTGAGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATG 954
|||| ||| | || ||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 604 TAGACCGATCCATTGAAGCAGAGGATAGGAAGCATGGAGATTTCTTGAGATTGGACCATG 663
Query 955 TTGAAGGGTACCTAGAGTTGTCAGGCAAGACGAAAACTTACTTTTCTACAGCAT-TTTCG 1013
||||||| ||||| ||||| |||||||| |||||||| || |||||||| || | ||||
Sbjct 664 TTGAAGGATACCTTGAGTTATCAGGCAAAACGAAAACATATTTTTCTACCGC-TGTTTCA 722
Query 1014 ATGTGGGATGCAGATTTCTATGTCAAAGTAGATGATGATGTTCATGTCAATATAGCAACT 1073
| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 723 AAGTGGGATGCAGAATTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGCAACT 782
Query 1074 CTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCA-CGGGTCTATATTGGTTGCATGAA 1132
|||||||| |||||||| |||||| |||| |||| | || |||||||| || ||||||||
Sbjct 783 CTTGGGGAGACTCTTGTCAGACACAGGAAGAAAC-ATCGAGTCTATATCGGCTGCATGAA 841
Query 1133 ATCTGGCCCTGTCCTCTCTCAAAAAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTT 1192
|||||| || ||||| ||||||||||| || || ||||||||||| || || ||||| ||
Sbjct 842 ATCTGGTCCAGTCCTATCTCAAAAAGGAGTTAGATACCATGAGCCTGAATATTGGAAATT 901
Query 1193 TGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAG 1252
|||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 902 TGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCAAG 961
Query 1253 GGACTTGGCTTCTTATATAT-CAATCAATCAGCATGTTCTTCACAAGTATGCGAACGAAG 1311
|||||||||||||| || | | | |||||||||||||| ||||| ||||| || || |
Sbjct 962 AGACTTGGCTTCTTACAT-TGCCCTTAATCAGCATGTTCTGCACAAATATGCAAATGAGG 1020
Query 1312 ATGTTTCGCTAGGAGCTTGGTTTATCGGGATTGATGTTAAACACATTGATGATAGAAGAT 1371
||||| | |||| ||||||||||||||| ||||||||| ||| || ||||||||||||
Sbjct 1021 ATGTTACATTAGGTGCTTGGTTTATCGGGCTTGATGTTACACATATCGATGATAGAAGAC 1080
Query 1372 TATGCTGCGGAACTCCTCCTGATTGCGAATGGAAAGCACAAGCTGGAAACATCTGTGTAG 1431
|||| ||||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||
Sbjct 1081 TATGTTGCGGCACTCCTCCGGATTGTGAATGGAAGGCACAAGCAGGCAACATATGTGTAG 1140
Query 1432 CATCATTCGACTGGAGCTGCAGCGGAATCTGCAGATCCGCAGATCGCATCAAAGAGGTTC 1491
| ||||| ||||||| ||| || || ||||||||||| || ||||| || ||||| ||||
Sbjct 1141 CTTCATTTGACTGGACCTGTAGTGGTATCTGCAGATCAGCTGATCGAATTAAAGAAGTTC 1200
Query 1492 ATA-GACGTTGCGGTGAAGGTGAAAAGGCTCTTTGGAGTGCCACG-TTTTGA 1541
| | | || || |||||| ||||| ||| |||||| |||| | ||||||
Sbjct 1201 ACAAG-CGATGTGGTGAACCAGAAAACGCTATTTGGAAAGCCA-GATTTTGA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5