BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05180.1
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470511 jgi|Araly1|470511|fgenesh2_kg.1__465__AT1G05180.1 2880 0.0
Ahg933807 jgi|Araly1|933807|scaffold_401795.1 1502 0.0
> Ahg470511 jgi|Araly1|470511|fgenesh2_kg.1__465__AT1G05180.1
Length=1902
Score = 2880 bits (1559), Expect = 0.0
Identities = 1755/1850 (95%), Gaps = 12/1850 (1%)
Strand=Plus/Plus
Query 5 TCAGTTCACCGGAGGCAAAAATCGTCTCTCGCT-TGAGCTGCGAAGATGCAAGCAGTAAA 63
||||||||||||||||||||||| ||||||||| | |||||||||||||||| || | ||
Sbjct 1 TCAGTTCACCGGAGGCAAAAATCATCTCTCGCTCTCAGCTGCGAAGATGCAACCAATCAA 60
Query 64 AAGATCCAGGAGACATGTTGAAGAAGAGCCAACAATGG-TAGAACCTAAAACCAAGTACG 122
||||||||| | |||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct 61 AAGATCCAGAAAACATGTTGAAGAAGAGCCAACAATGGCT-GAACCTAAAATCAAGTACG 119
Query 123 ATCGTCAGCTCAGGATTTGGGGGGAGGTAGGTCAAGCGGCCTTGGAAGAAGCGAGTATCT 182
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 ATCGTCAACTCAGGATTTGGGGGGAGGTAGGTCAAGCGGCTTTGGAAGAAGCGAGTATCT 179
Query 183 GTTTACTCAATTGTGGCCCTACTGGTTCCGAGGCTTTGAAGAATCTCGTACTTGGTGGTG 242
|||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 180 GTTTGCTCAATTGTGGCCCTACTGGCTCCGAGGCCTTGAAGAATCTCGTCCTTGGTGGTG 239
Query 243 TTGG-TAGCATCACCGTTGTTGATGGATCTAAGGTTCAATTTGGTGACCTTGGGAACAAT 301
|||| | |||||||| | ||||||||||| | ||||||| ||||||||||||| ||||||
Sbjct 240 TTGGCT-GCATCACCATCGTTGATGGATCCACGGTTCAAATTGGTGACCTTGGAAACAAT 298
Query 302 TTCATGGTCGATGCGAAGAGTGTTGGCCAATCAAAAGCCAAATCTGTTTGTGCGTTTCTC 361
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 299 TTCATGGTCGATGCGAAGAGTGTTGGGCAGTCTAAAGCCAAATCTGTTTGTGCGTTTCTC 358
Query 362 CAAGAGCTTAATGATTCTGTTAACGCCAAGTTTATTGAGGAGAATCCAGACACGTTGATT 421
|||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||
Sbjct 359 CAAGAGCTTAATGATTCTGTTAACGCCAGGTTTATTGAGGAGAATCCAGATACTTTGATT 418
Query 422 ACTACTAACCCATCTTTCTTCTCTCAGTTCACTCTCGTTATAGCCACTCAGCTGGTGGAA 481
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 ACTACTAACCCATCTTTCTTCTCTCAGTTTACTCTCGTTATAGCCACTCAGCTGGTGGAA 478
Query 482 GATTCAATGTTGAAACTTGATAGAATCTGTCGAGATGCAAACGTTAAGTTGGTTTTGGTT 541
||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 479 GATTCAATGGTGAAACTTGATAGAATCTGTCGAGAAGCAAACGTCAAGTTGGTTTTGGTT 538
Query 542 CGCTCTTATGGCCTTGCTGGGTTTGTTCGCATCTCTGTAAAGGAGCACCCCATAATTGAC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGCTCTTATGGCCTTGCTGGGTTTGTTCGCATCTCTGTAAAGGAGCACCCCATAATTGAC 598
Query 602 TCAAAACCTGATCATTTTCTTGACGACCTCCGCCTGAATAATCCATGGCCTGAACTCAAG 661
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 599 TCAAAACCAGATCATTTTCTTGACGACCTTCGCTTGAATAATCCATGGCCTGAACTCAAG 658
Query 662 AGTTTTGTGGAGACCATTGATCTGAATGTATCAGAGCCGGCCGCTGCACATAAGCACATA 721
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 659 AGTTTTGTGGAGACCATTGATCTAAATGTATCAGAGCCGCCCGCTGCACATAAGCACATA 718
Query 722 CCTTACGTCGTCATTCTTGTAAAGATGGCTGAGGAGTGGGCTCAATCCCATAGTGGTAAT 781
|||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 719 CCTTACGTTGTCATTCTTGTGAAGATGGCTGAGGAGTGGGCTCTATCCCATAGTGGTAAT 778
Query 782 CTTCCCTCAACCAGGGAAGAGAAAAAAGAGTTTAAGGATTTGGTTAAGTCCAAGATGGTA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 CTTCCCTCAACCAGGGAAGAGAAAAAAGAGTTTAAGGATTTGGTTAAGTCCAAGATGATA 838
Query 842 TCTACGGATGAAGATAACTACAAAGAAGCCATTGAAGCCGCTTTCAAAGTTTTTGCTCCT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCTACGGATGAAGATAACTACAAAGAAGCCATTGAAGCCGCTTTCAAAGTTTTTGCTCCT 898
Query 902 CGAGGAATCAGCTCAGAGGTTCAAAAATTAATTAATGATAGTTGTGCTGAAGTGAATTCA 961
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 AGGGGAATCAGCTCAGAGGTTCAAAAATTAATTAATGATAGTTGTGCTGAAGCGAATTCA 958
Query 962 AACTCCTCAGCTTTTTGGGTGATGGTAGCGGCTCTGAAGGAGTTTGTTTTAAATGAAGGT 1021
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 959 AACTCATCAGCTTTTTGGGTGATGGTAGCGGCTCTGAAGGAGTTTGTTTTAAACGAAGGT 1018
Query 1022 GGTGGAGAGGCACCCCTTGAAGGTTCTATACCAGATATGACCTCTTCAACAGAACACTAT 1081
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1019 GATGGAGAGGCACCCCTTGAAGGCTCTATACCAGATATGACGTCTTCAACAGAACACTAT 1078
Query 1082 ATCAATTTGCAGAAAATCTATTTAGCCAAAGCCGAGGCTGATTTTCTTGTCATTGAGGAA 1141
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1079 ATCAATTTGCAGAAAATCTATTTAGTCAAAGCCGAGGCTGATTTTCTTGTCATGGAGGAA 1138
Query 1142 CGAGTTAAAAACATTTTAAAGAAAATCGGTCGAGATCCGAGCAGCATCCCAAAACCAACA 1201
||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct 1139 CGAGTTAAAAACATTTTAAAGAAAATCGGCCGAGATCCGAATAGCATCTCAAAACCAACA 1198
Query 1202 ATCAAGAGCTTCTGCAAGAATGCAAGGAAACTTAAATTGTGCAGATATCGTATGGTAGAG 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATCAAGAGCTTCTGCAAGAATGCAAGGAAACTTAAATTGTGCAGATATCGTATGGTAGAG 1258
Query 1262 GACGAGTTCAGAAATCCTTCTGTAACTGAAATTCAAAAGTATTTAGCGGACGAGGATTAC 1321
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1259 GACGAGTTCAGCAATCCTTCTGTAACTGAAATTCAAAAGTATTTAGCGGATGAGGACTAC 1318
Query 1322 AGTGGTGCAATGGGATTTTATATTCTTCTTAGAGCTGCGGACAGATTTGCTGCCAACTAT 1381
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AGTGGTGCAATGGGGTTTTATATTCTTCTTAGAGCTGCGGACAGATTTGCTGCCAACTAT 1378
Query 1382 AACAAGTTTCCTGGGCAGTTTGATGGAGGAATGGATGAGGACATTTCTCGATTAAAAACT 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AACAAGTTTCCTGGGCAGTTTGATGGAGGAATGGATGAGGACATTTCTCGATTAAAAACT 1438
Query 1442 ACTGCCTTGAGTCTTCTTACCGACTTGGGCTGTAACGGCTCAGTACTCCCAGATGACCTT 1501
|||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 1439 ACTGCCTTGAGTCTTCTTACGGACTTGGGCTGTAACGGCGCAGTACTCCCCGATGACCTT 1498
Query 1502 ATCCATGAGATGTGTCGCTTTGGTGCCTCAGAGATTCATGTGGTTTCTGCCTTTGTTGGA 1561
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATCAATGAGATGTGCCGCTTTGGTGCCTCAGAGATTCATGTGGTTTCTGCCTTTGTTGGA 1558
Query 1562 GGAATCGCATCTCAAGAAGTCATCAAGCTTGTCACAAAGCAGTTTGTTCCGATGTTGGGG 1621
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1559 GGAATCGCATCTCAAGAAGTCATCAAGCTTGTCACGAAGCAGTTTGTTCCAATGTTGGGG 1618
Query 1622 ACTTACATCTTCAATGGCATTGATCACAAGTCTCAGTTATTGAAATTGTAGAAGATCTTT 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ACTTACATCTTCAATGGCATTGATCACAAGTCTCAGTTATTGAAATTGTAGAAGATCTTT 1678
Query 1682 CCTTAACACATTGGCTTGAAACAGAGAGAAAGAGCTCTATCATAT--ATT-ATTCTTCT- 1737
||||| ||||||||||||||||||||||||| |||| |||||||| ||| ||||||||
Sbjct 1679 CCTTA-CACATTGGCTTGAAACAGAGAGAAATAGCTTTATCATATCTATTTATTCTTCTC 1737
Query 1738 -GA-TTAAAAGATAATCTTTTTGCTACTACTGAGAAACAAAATTTTCAATGACAGTTCAG 1795
|| || ||||| | ||||||||| |||||| |||||||| | |||||||||| |||||
Sbjct 1738 TGAGTTGAAAGAGATTCTTTTTGCGGCTACTGGGAAACAAACTGTTCAATGACAATTCAG 1797
Query 1796 CTGAGACCATCCGACTCAGAATCTTCGAAAATCTTGCTTTGCTTTGTCCT 1845
| ||||| || |||||| |||| ||| || || |||||||||||||||||
Sbjct 1798 CCGAGACAATTCGACTCCGAATTTTCCAACATATTGCTTTGCTTTGTCCT 1847
> Ahg933807 jgi|Araly1|933807|scaffold_401795.1
Length=1612
Score = 1502 bits (813), Expect = 0.0
Identities = 1358/1618 (84%), Gaps = 50/1618 (3%)
Strand=Plus/Plus
Query 87 AAGAGCCAACAATGGTAGAACCTAAAACCAAGTACGATCGTCAGCTCAGGATTTGGGGGG 146
|||| |||||||||| ||||| || ||||||||||||||||| |||||||||||||| |
Sbjct 10 AAGAACCAACAATGGCGGAACCCAAGACCAAGTACGATCGTCAACTCAGGATTTGGGGAG 69
Query 147 AGGTAGGTCAAGCGGC-CTTGGAAGAA-GCGAGTATCTGTTTACTCAATTGTGGCCCTAC 204
| |||||||| |||| ||| ||| || ||||| |||||||| |||||||||||||| ||
Sbjct 70 AACTAGGTCAATCGGCTCTT-GAA-AACGCGAGCATCTGTTTGCTCAATTGTGGCCCAAC 127
Query 205 TGGTTCCGAGGCTTTGAAGAATCTCGTACTTGGTGGTGTTGGTAGCATCACCGTTGTTGA 264
||| || |||||| | |||||||| || |||||||| | || || |||||| | |||||
Sbjct 128 TGGCTCTGAGGCTCTAAAGAATCTTGTTCTTGGTGGAATCGGAAGTATCACCATCGTTGA 187
Query 265 TGGATCTAAGGTTCAATTTGGTGACCTTGGGAACAATTTCATGGTCGATGCGAAGAGTGT 324
|||||||| || || |||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct 188 CGGATCTAAAGTAGAAATTGGCGACCTTGGAAACAATTTCATGGTGGATGCGAAGAGCGT 247
Query 325 TGGCCAATCAAAAGCCAAATCTGTTTGT-GCGTTTCTCCAAGAGCTTAATGATTCTGTTA 383
||| || |||||||||||| |||| ||| || ||||| || ||| |||| ||| ||||||
Sbjct 248 TGGTCAGTCAAAAGCCAAAACTGTCTGTGGC-TTTCTTCAGGAGATTAACGATGCTGTTA 306
Query 384 ACGCCAAGTTTATTGAGGAGAATCCAGACACGTTGATTACTACTAACCCATCTTTCTTCT 443
| | || ||| ||||||||||||||||||| |||||| | ||| |||||||||||||||
Sbjct 307 AATCAAACTTTGTTGAGGAGAATCCAGACACATTGATTTCGACTGACCCATCTTTCTTCT 366
Query 444 CTCAGTTCACTCTCGTTATAGCCACTCAGCTGGTGGAAGATTCAATGTTGAAACTT-GAT 502
||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||| || |||
Sbjct 367 CTCAGTTCACTCTAGTTATCGCCACTCAGCTAGTGGAAGATTCAATGGTGAAA-TTAGAT 425
Query 503 AGAATCTGTCGAGATGCAAACGTTAAGTTGGTTTTGGTTCGCTCTTATGGCCTTGCTGGG 562
|||||||| || || ||||| || | ||||||||||| |||||| ||||||||| |||||
Sbjct 426 AGAATCTGCCGGGAAGCAAAGGTCATGTTGGTTTTGGCTCGCTCCTATGGCCTTACTGGG 485
Query 563 TTTGTTCGCATCTCTGTAAAGGAGCAC-CC-CATAATTGACTCAAAACCTGATCATTTTC 620
|||||||| |||| ||||||||||||| || | | || || ||||| |||||||||| ||
Sbjct 486 TTTGTTCGTATCTGTGTAAAGGAGCACACCGC-T-ATCGAGTCAAAGCCTGATCATTCTC 543
Query 621 TTGACGACCTCCGCCTGAATAATCCATGGCCTGAACTCAAGAGTTTTGTGGAGACCATTG 680
|||| || |||||| |||||||||||||||||||||| ||||| | ||||||| ||||||
Sbjct 544 TTGATGATCTCCGCTTGAATAATCCATGGCCTGAACTGAAGAGGTATGTGGAGTCCATTG 603
Query 681 ATCTGAATGTATCAGAGCCGGCCGCTGCACATAAGCACATACCTTACGTCGTCATTCTTG 740
|| | |||||| ||| | ||||||| ||||||||||| ||||||||||||||||| |
Sbjct 604 ATTTAAATGTAGAAGA-AC--CCGCTGCCCATAAGCACATTCCTTACGTCGTCATTCTAG 660
Query 741 TAAAGATGGCTGAGGAGTGGGCTCAATCCCATAGTGGTAATCTTCCCTCAACCAGGGAAG 800
| ||| ||||||| || ||||||||| ||||||| | || ||||| |||||||||||||
Sbjct 661 TCAAGGTGGCTGAAGAATGGGCTCAAACCCATAGCAGCAACCTTCCATCAACCAGGGAAG 720
Query 801 AGAAAAAAGAGTTTAAGGATTTGGTTAAGTCCAAGATGGTATCTACGGATGAAGATAACT 860
||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct 721 AGAAAAACGAGTTTAAGGATTTAGTTAAGTCCAAGATGGCATCAACGGATGAAGATAACT 780
Query 861 ACAAAGAAGCCATTGAAGCCGCTTTCAAAGTTTTTGCTCCTCGAGGAATCAGCTCA-GAG 919
||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 781 ACAAAGAAGCCATTGTAGCCGCTTTCAAAGTTTTTGCTCCTAGAGGAATCAGC-CAAGAG 839
Query 920 GTTCAAAA-ATTAATTAATGATAGTTGTGCTGAAGT-GAATTCAAACTCCTCAGCTTTTT 977
||||| | |||| || ||||||| ||||||||||| | | |||| ||||||| |||||
Sbjct 840 ATTCAAGACATTA-TTCATGATAGATGTGCTGAAGTTGGCT-CAAATTCCTCAGATTTTT 897
Query 978 GGGTGATGGTAGCGGCTCTGAAGGAGTTTGTTTTAAATGAAGGTGGTGGAGAGGCACCCC 1037
|||| |||||||| || || ||||||||| ||| ||||||||||||||| ||| |||| |
Sbjct 898 GGGTAATGGTAGCAGCACTCAAGGAGTTTATTTCAAATGAAGGTGGTGGGGAGCCACCAC 957
Query 1038 TTGAAGGTTCTATACCAGATATGACCTCTTCAACAGAACACTATATCAATTTGCAGAAAA 1097
|||||||||| || || ||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct 958 TTGAAGGTTCCATGCCTGATATGATATCTTCCACAGAGCACTACATCAATTTGCAGAAAA 1017
Query 1098 TCTAT--TTAGCCAAAGCCGAGGCTGATTTTCTTGTC-ATTGAGGA-ACGAGTTAAAAA- 1152
|||| || ||||||| || |||||||||||| || || ||| | | |||| |||||
Sbjct 1018 TCTACCATT--CCAAAGCTGAAGCTGATTTTCTT-TCCATGGAGCAGA-GAGT-AAAAAG 1072
Query 1153 CATTTTAAAGAAAATCGGTCGAG-ATCCGAGCAGCATCCCAAAACCAACAATCAAGAGCT 1211
|||| || ||| | |||| || |||| || |||||||||||| |||| ||||||| ||
Sbjct 1073 CATTCTAGTTAAAGTTGGTC-AGGATCCAAGTAGCATCCCAAAATCAACTATCAAGATCT 1131
Query 1212 TCTGCAAGAATGCAAGGAAACTTAAATTGTGCAGATATCGTATGGTAGAGGACGAGTTCA 1271
|||||||||||||||| ||||||||| | |||||||||| | | |||||||||||||||
Sbjct 1132 TCTGCAAGAATGCAAGAAAACTTAAAGTCTGCAGATATCAAACGATAGAGGACGAGTTCA 1191
Query 1272 GAAATCCTTCTGTAACTGAAATTCAAAAGTATTTAGCGGACGAGGATTACAGTGGTGCAA 1331
|||||||||||| ||| ||| | || ||||| || || || |||||||||||| ||||||
Sbjct 1192 GAAATCCTTCTGCAACAGAACTACATAAGTACTTGGCTGATGAGGATTACAGTAGTGCAA 1251
Query 1332 TGGGATTTTATATTCTTCTTAGAGCTGCGGACAGATTTGCTGCCAACTATAACAAGTTTC 1391
| ||||||||||||||||||||||||| || ||||||||||| | |||||| |||||||
Sbjct 1252 TTGGATTTTATATTCTTCTTAGAGCTGTTGATAGATTTGCTGCGACCTATAAGAAGTTTC 1311
Query 1392 CTGGGCAGTTTGATGGAGGAA-TGGATGAGGACATTTCTC-GATTAAAAACTACTGCCTT 1449
|||| |||||||||||| || || |||| ||| || | | ||||| || | |||| |
Sbjct 1312 CTGGACAGTTTGATGGATCAACTG-ATGATGACGCATCCCAG-TTAAAGACCATTGCCCT 1369
Query 1450 GAGTCTTCTTACCGACTTGGGCTGTAACGGCTCA-GTACTCCCAG-ATGACCTT-ATCCA 1506
||||||||||| ||| |||| ||| |||||| | ||||| || | || ||| ||
Sbjct 1370 GAGTCTTCTTAGCGAAATGGGTTGTGACGGCT-ATGTACTTA-AGGAAGAACTTTATAG- 1426
Query 1507 TGAGATGTGTCGCTTTGGTGCCT-CAGAGATTCATGTGGTTTCTGCCTTTGTT-GGAGGA 1564
|||||||||| | |||||||| | |||||||||| |||||| |||| ||| | ||||||
Sbjct 1427 TGAGATGTGTAGATTTGGTGC-TGCAGAGATTCACGTGGTTGCTGC-TTTCATAGGAGGA 1484
Query 1565 ATCGCATCTCAAGAAGTCATCAAGCTTGTCACAAAGCAGTTTGTTCCGATGTTGGGGACT 1624
|||||||||||||||| ||||||||| |||| |||||||||||||| ||| | || |||
Sbjct 1485 GTCGCATCTCAAGAAGTGATCAAGCTTATCACGAAGCAGTTTGTTCCCATGCTAGGAACT 1544
Query 1625 TACATCTTCAATGGCATTGATCACAAGTCTCAGT-TATTGAAATTGTAGAAGAT-CTT 1680
| ||||||||| ||||||||||||| |||||||| | |||||||| || ||||| |||
Sbjct 1545 TTCATCTTCAACGGCATTGATCACAGGTCTCAGTCT-TTGAAATTATAAAAGATTCTT 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5