BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05190.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470512 jgi|Araly1|470512|fgenesh2_kg.1__466__AT1G05190.1 1227 0.0
> Ahg470512 jgi|Araly1|470512|fgenesh2_kg.1__466__AT1G05190.1
Length=866
Score = 1227 bits (664), Expect = 0.0
Identities = 751/791 (95%), Gaps = 13/791 (2%)
Strand=Plus/Plus
Query 1 ATGGATAAGTCTTTTCTGGATAAAACGCTCTTCTTCTTCTCTTCATCCTCCTTCTGGAGC 60
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 1 ATGGATAAGTCTTTTCTGGATAAAACACTCTTCTTCTTCTCTCCATCCTCCTT-TGGAGC 59
Query 61 AGAGCTTAGAGCTCCATCATCAAATCTTATCAATGGCTTCCTCACTCGTCTCATCTTTTC 120
|||||| |||| | || | ||| |||||||||||||||||||||||| || ||||
Sbjct 60 AGAGCTAAGAG---C-TC--C--ATC--ATCAATGGCTTCCTCACTCGTCTCTTCCTTTC 109
Query 121 AACCCAGGTCAGCATTTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTTTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 AACCCAGGTCAGCATTTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTTTG 169
Query 181 CTCAAGTGGGTTACTCCAGTAAGACCATTGAGTGCAAAGAATCAAGGATAGGAAAGCAAC 240
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 170 CTCAAGTTGGTTACTCCAGTAAGACCATTGAGTGCAAGGAATCAAGGATAGGAAAGCAAC 229
Query 241 CGATCGCTGTACCTTCCAATGTAACCATTGCATTGGAAGGTCAAGACTTGAAAGTGAAGG 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 230 CGATCGCTGTACCTTCCAATGTTACCATTGCATTGGAAGGTCAAGACTTGAAAGTGAAAG 289
Query 301 GTCCATTAGGAGAGCTGGCTTTAACTTACCCACGCGAAGTTGAGCTTACAAAGGAAGAAT 360
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 290 GTCCATTAGGAGAGCTGGCTTTAACTTACCCACGCGAAGTTGAACTTACCAAGGAAGAAT 349
Query 361 CCGGTTTCTTAAGGGTCaaaaaaaCCGTCGAAACTAGAAGAGCCAACCAAATGCACGGCC 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 350 CCGGTTTCTTAAGGGTCAAAAAAACAGTCGAAACTAGAAGAGCCAACCAAATGCACGGCC 409
Query 421 TTTTCAGGACGCTTACCGATAACATGGTTGTGGGAGTATCAAAGGGATTTGAGAAAAAGC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 410 TTTTCAGGACGCTTACCGATAACATGGTTGTGGGAGTATCAAAGGGATTTGAGAAAAAAC 469
Query 481 TTATACTTGTGGGTGTTGGTTATCGTGCAACAGTAG-ACGGAAAGGAGCTGGTGCTAAAT 539
|||||||||||||||||||||||||||||||||| | | ||||| ||||||||||| |||
Sbjct 470 TTATACTTGTGGGTGTTGGTTATCGTGCAACAGTCGAAGGGAAA-GAGCTGGTGCTGAAT 528
Query 540 CTCGGGTTTTCACACCCGGTGAAGATGCAGATACCGGATAGTCTGAAAGTGAAAGTGGAA 599
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 529 CTCGGGTTCTCACACCCGGTTAAGATGCAGATACCGGATAGTCTGAAAGTGAAAGTGGAA 588
Query 600 GAGAACACAAGAATCACTGTGAGTGGATACGACAAGAGCGAAATCGGGCAGTTTGCTGCA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GAGAACACAAGAATCACTGTGAGTGGATACGACAAGAGCGAAATCGGGCAGTTTGCTGCT 648
Query 660 ACGGTTAGGAAGTGGAGGCCACCAGAGCCATACAAGGGGAAAGGAGTCAAGTATTCCGAT 719
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 649 ACTGTTAGGAAGTGGAGGCCACCAGAGCCATACAAAGGTAAAGGAGTCAAGTATTCCGAC 708
Query 720 GAGATAGTTCGGAGGAAGGAAGGAAAAGCTGGAAAGAAGAAATGATCTTCATTTTTCATT 779
||||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 709 GAGATCGTTCGGAGAAAGGAAGGAAAAGCTGGAAAGAAGAAGTGATCTTCATATTTCATT 768
Query 780 ATTATCTACTT 790
|||||||||||
Sbjct 769 ATTATCTACTT 779
Score = 148 bits (80), Expect = 5e-35
Identities = 87/90 (97%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 822 TTTGCTCAAATTTGTTTAGAAATGAAGATGTTTGTGTTGGGATTCTTGAGTAAGTTTTTA 881
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 778 TTTGCTCAAATCTGTTTAGAAATGAAGATGTTTGTTTTGGGATTCTTGAG-AAGTTTTTA 836
Query 882 AAGGAACCCATTAATTGTTTTTGATGCTCT 911
||||||||||||||||||||||||||||||
Sbjct 837 AAGGAACCCATTAATTGTTTTTGATGCTCT 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5