BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05200.1
Length=3257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470513 jgi|Araly1|470513|fgenesh2_kg.1__467__AT1G05200.2 4990 0.0
Ahg344999 jgi|Araly1|344999|fgenesh1_pg.C_scaffold_4001341 2165 0.0
> Ahg470513 jgi|Araly1|470513|fgenesh2_kg.1__467__AT1G05200.2
Length=3278
Score = 4990 bits (2702), Expect = 0.0
Identities = 2978/3112 (96%), Gaps = 16/3112 (1%)
Strand=Plus/Plus
Query 146 GGTGTTACTCCAAATAAATCAAATGGTTATATGAGACCAGGAC-AA-AG--AAAAACTAG 201
|||||||||||||||| | ||||||||| ||| |||||||||| || || |||||| ||
Sbjct 178 GGTGTTACTCCAAATATACCAAATGGTTTTATAAGACCAGGACAAAGAGAAAAAAACCAG 237
Query 202 TGCTTTTGCTGGAAATTGTGATAAAGATGGGATTTTTGGTGATGATAAGAGAAGTTTCCA 261
||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| |
Sbjct 238 TGCTTTTGCTGGAAATTGTGATAAAGATGAGATTTTTGGTGACGATAAGAGGAGTTTCTA 297
Query 262 TGGCGAAAGCAATCAGAGTTGTGTTGTTATGTGTTTCTGTCTTGTGGGTTGTTCCAAAGG 321
|||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct 298 TGGCGAAAGCAATCAGAGTTGTGTTGTTATGTCTCTCTGTCTTGTGGGTCGTTCCAAAGG 357
Query 322 AATGTGCTTGTAGAAGTAATTTCTCTAGAAACTCGtcttcttcttcttcttcttcttTGC 381
|||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct 358 AATGTGCTTGCAGAAGTAATTTCTCAAGAAACTCG------TCTTCAACTTCTTCTTTGC 411
Query 382 GGCCATTAAGACAGAGGCCAAGCTCTGTGAATGTTGGAGCTCTGTTTACTTATGATTCTT 441
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CGCCATTATCACAGAAGCCAAGCTCTGTGAATGTTGGAGCTCTGTTTACTTATGATTCTT 471
Query 442 TTATCGGAAGAGCGGCTAAACCCGCGGTTAAAGCAGCTATGGATGATGTTAATGCTGACC 501
|||||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||
Sbjct 472 TTATCGGAAGAGCGGCTAAACCCGCGTTTATAGCGGCAATGGATGATGTTAATGCTGACC 531
Query 502 AAAGTGTTCTTAAGGGCATCAAGCTTAATATCATCTTTCAAGACTCAAATTGCAGTGGAT 561
|| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 532 TAACTGTACTTAAGGGCATCAAGCTTAATATTGTTTTTCAAGACTCAAATTGCAGTGGAT 591
Query 562 TTATCGGCACCATGGGAGCTTTGCAGCTGATGGAAAACAAAGTGGTTGCAGCCATTGGTC 621
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTATAGGCACCATGGGAGCTTTGCAGCTGATGGAAAACAAAGTGGTTGCAGCCATTGGTC 651
Query 622 CACAATCTTCAGGGATTGCTCACATGATCTCCTATGTAGCTAATGAGCTTCATGTACCTC 681
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 652 CACAATCTTCAGGGATTGCTCACATGATCTCCTATGTATCTAATGAGCTTCATGTACCTC 711
Query 682 TCTTGTCATTTGGAGCAACGGATCCGACTCTCTCCTCTCTGCAATTTCCTTATTTCCTCC 741
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 712 TCTTGTCATTTGGAGCAACGGATCCGACTCTCTCCTCTCTGCAATATCCTTATTTCCTCC 771
Query 742 GCACCACGCAGAATGATTACTTCCAAATGCATGCGATCGCAGATTTTCTATCATATTCCG 801
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 772 GCACCACGCAGAATGATTACTTCCAAATGCATGCAATCGCAGATTTTCTATCATATTCCG 831
Query 802 GATGGAGACAAGTCATTGCGATATTCGTTGATGATGAGTGTGGCAGGAACGGGATATCTG 861
|||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 832 GATGGAGACAAGTCATTGCGATATTCATTGATGATGAATGTGGTAGGAACGGGATATCTG 891
Query 862 TCCTTGGCGATGTATTAGCCAAGAAACGCTCGAGGATCTCTTACAAGGCTGCAATTACTC 921
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 892 TTCTAGGCGATGTATTAGCCAAGAAACGCTCCAGGATCTCTTACAAGGCTGCAATTACTC 951
Query 922 CTGGTGCAGATTCTAGCTCCATC-AGAGACTTGTTGGTTTCTGTTAATCTGATGGAATCT 980
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 952 CTGGTGCAGATTCTAGCTCCATCAAG-GACTTGTTGGTTTCTGTTAATCTGATGGAATCT 1010
Query 981 CGGGTTTTTGTTGTCCATGTGAATCCTGACTCTGGTTTAAACGTTTTTTCTGTGGCTAAA 1040
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1011 CGGGTTTTTGTTGTTCATGTGAATCCTGACTCTGGTTTAAACGTTTTCTCTGTGGCTAAA 1070
Query 1041 TCTCTTGGAATGATGGCAAGTGGTTATGTTTGGATCGCAACAGACTGGCTTCCTACAGCT 1100
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TCTCTTGGAATGATGGGAAGTGGTTATGTTTGGATCGCAACAGACTGGCTTCCTACAGCT 1130
Query 1101 ATGGATTCCATGGAGCACGTGGATTCAGACACGATGGATCTCTTGCAAGGAGTGGTTGCT 1160
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1131 ATGGATTCCATGGAGCACGTGGATTCCGACACGATGGATCTCTTGCAAGGAGTGGTTGCT 1190
Query 1161 TTTCGCCACTACACAATCGAGAGTAGTGTCAAAAGACAGTTTATGGCGAGATGGAAGAAT 1220
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||| || |
Sbjct 1191 TTTCGCCATTACACAATTGAGAGTAGTGTGAAGAGACAGTTTATGGCGAGATGGAGGAGT 1250
Query 1221 CTTAGACCAAATGATGGCTTTAACTCTTATGCGATGTATGCTTATGATTCTGTTTGGTTA 1280
|||||||| ||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct 1251 CTTAGACCCAATGATGGCTTCAACTCTTACGCGATGTACGCTTATGATTCTGTCTGGTTA 1310
Query 1281 GTTGCTCGTGCCCTCGATGTTTTCTTCAGAGAAAACAATAACATAACTTTCTCCAACGAT 1340
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1311 GTTGCTCGTGCCCTCGATGTTTTCTTCAGAGAAAACAATAAAATAACTTTCTCCAACGAT 1370
Query 1341 CCAAATCTGCACAAAACAAATGGTAGCACTATTCAGCTATCAGCACTAAGTGTTTTCAAT 1400
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1371 CCAAATCTACACAAAACCAATGGTAGCACAATTCAGCTATCAGCACTAAGTGTTTTCAAT 1430
Query 1401 GAAGGAGAGAAGTTTATGAAGATCATTCTTGGGATGAATCATACTGGTGTGACGGGTCCA 1460
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1431 GAAGGGGAGAAGTTTATGAAGATCATTCTTGGGATGAATCATACTGGTGTGACGGGCCCA 1490
Query 1461 ATCCAGTTTGATTCAGATAGAAACCGGGTTAATCCGGCTTATGAAGTTCTAAACTTAGAA 1520
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1491 ATCCAGTTTGATTCAGATAGAAACCGGGTTAACCCGGCTTATGAAGTTCTAAACTTAGAA 1550
Query 1521 GGTACAGCTCCACGCACAGTCGGGTACTGGTCAAATCATTCGGGTCTCTCTGTGGTCCAT 1580
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 GGTACAGGTCCACGCACAGTCGGGTACTGGTCAAATCATTCGGGTCTCTCTGTGGTCCAT 1610
Query 1581 CCAGAGACCTTGTACTCTAGGCCTCCAAACACATCTACAGCAAACCAGCGTCTTAAAGGA 1640
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 1611 CCAGAGACCTTGTACTCTAAGCCTCCAAACACATCTACAGCAAACCAGCGTCTTCATGGA 1670
Query 1641 ATCATATATCCAGGAGAAGTAACTAAGCCTCCTCGTGGTTGGGTGTTTCCTAATAATGGA 1700
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 ATCATATGGCCAGGCGAAGTAACTAAGCCTCCTCGTGGTTGGGTGTTTCCTAATAATGGA 1730
Query 1701 AAACCGCTCAGAATCGGGGTGCCTAACCGTGTGAGCTATACAGATTACGTTTCTAAGGAT 1760
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1731 AAACCGCTCAGAATCGGGGTGCCTAACCGTGTGAGCTATACAGAATACGTTTCTAAGGAT 1790
Query 1761 AAAAACCCGCCTGGCGTTAGAGGCTACTGCATTGATGTCTTTGAAGCCGCTATTGAATTG 1820
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1791 AAGAACCCGCCTGGCGTTAGAGGCTACTGCATTGATGTCTTTGAAGCCGCAATTGAATTG 1850
Query 1821 CTTCCATATCCTGTTCCACGTACTTATATACTATATGGAGACGGGAAGAGAAATCCTTCT 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CTTCCATATCCTGTTCCACGTACTTATATACTATATGGAGACGGGAAGAGAAATCCTTCT 1910
Query 1881 TATGATAACCTCGTCAATGAAGTTGTTGCGGATAATTTTGATGTAGCTGTAGGAGATATC 1940
|| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1911 TACGATAATCTCGTCAATGAAGTGGTTGCAGATAATTTTGATGTAGCTGTAGGAGATATC 1970
Query 1941 ACAATCGTCACAAACAGAACAAGATATGTAGATTTCACACAACCGTTTATAGAATCAGGG 2000
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 ACAATCGTTACAAACAGAACAAGATATGTAGATTTCACACAACCGTTTATAGAATCAGGG 2030
Query 2001 CTTGTGGTGGTGGCTCCGGTTAAGGAGGCCAAGTCTAGTCCTTGGTCATTCCTGAAACCA 2060
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 CTTGTGGTAGTGGCTCCGGTTAAGGAGGCCAAGTCTAGTCCTTGGTCATTCCTGAAACCA 2090
Query 2061 TTCACTATAGAGATGTGGGCTGTCACTGGAGGCTTCTTTCTCTTTGTGGGAGCCATGGTC 2120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2091 TTCACTATAGAGATGTGGGCTGTCACTGGAGCCTTCTTTCTCTTTGTGGGAGCCATGGTC 2150
Query 2121 TGGATTCTCGAACACCGCTTCAACCAAGAATTCCGTGGCCCTCCTAGGCGTCAACTCATT 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 TGGATTCTCGAACACCGCTTCAACCAAGAATTCCGTGGCCCTCCTAGGCGTCAACTCATT 2210
Query 2181 ACCATCTTCTGGTTTAGCTTCTCAACAATGTTCTTCTCTCATAGGGAGAACACGGTGAGT 2240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2211 ACCATCTTCTGGTTTAGCTTCTCAACGATGTTCTTCTCTCATAGGGAGAACACGGTGAGT 2270
Query 2241 TCACTGGGGAGGTTTGTGCTGATCATTTGGTTATTCGTGGTTCTGATCATCAACTCGAGC 2300
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2271 TCACTGGGGAGGCTGGTGCTGATCATTTGGTTATTCGTGGTTCTGATCATCAACTCGAGC 2330
Query 2301 TACACGGCCAGTCTCACTTCGATCCTAACCATTCGACAGCTGACATCTCGGATTGAAGGA 2360
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 2331 TACACGGCCAGTCTCACTTCAATCCTAACCGTTCGACAGCTGACATCTCGGATTGAAGGA 2390
Query 2361 ATAGATAGCTTGGTAACGAGCAATGAACCAATTGGAGTTCAAGACGGTACCTTTGCTCGG 2420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2391 ATAGATAGCTTGGTAACGAGCAATGAACCAATTGGAGTTCAAGACGGTACCTTTGCTCGG 2450
Query 2421 AACTATCTAATCAACGAGCTTAACATACTACCTTCAAGGATTGTTCCTCTGAAAGACGAA 2480
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 2451 AACTATCTAATCAACGAGCTTAACATACTTCCTTCGAGGATTGTTCCACTGAAAGACGAA 2510
Query 2481 GAACAGTACCTTTCTGCTCTGCAACGCGGTCCCAACGCTGGCGGTGTGGCAGCCATTGTA 2540
|||||||||||||||||||| || || |||||||| |||||||| |||||||||||||||
Sbjct 2511 GAACAGTACCTTTCTGCTCTACATCGTGGTCCCAAAGCTGGCGGCGTGGCAGCCATTGTA 2570
Query 2541 GATGAGCTTCCTTACATCGAAGTTCTTTTGACAAATAGCAACTGCAAATTCCGTACAGTA 2600
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2571 GACGAGCTTCCTTACATCGAAGTTCTTTTGACAAATAGCAACTGCAAGTTCCGTACAGTA 2630
Query 2601 GGGCAAGAGTTCACACGCACAGGCTGGGGTTTCGCATTCCAGAGAGATTCCCCTTTAGCT 2660
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2631 GGACAAGAATTCACACGCACAGGCTGGGGTTTCGCATTCCAGAGAGACTCCCCTTTAGCT 2690
Query 2661 GTAGACATGTCAACGGCTATCTTGCAACTATCTGAAGAAGGCGAGCTCGAGAAAATCCAT 2720
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2691 GTAGACATGTCAACGGCTATCTTGCAACTCTCTGAAGAAGGCGAGCTCGAGAAAATCCAC 2750
Query 2721 AGGAAATGGCTTAACTACAAGCATGAATGCTCGATGCAGATCTCAAACAGTGAGGACTCT 2780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2751 AGGAAATGGCTTAACTACAAGCATGAATGCTCGATGCAGATCTCACACAGTGAGGACTCT 2810
Query 2781 CAGCTTTCACTAAAGAGTTTCTGGGGACTCTTCCTTATCTGTGGCATCACTTGCTTCATG 2840
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2811 CAGCTTTCACTTAAGAGTTTCTGGGGACTCTTCCTTATCTGTGGCATCACTTGCTTCATG 2870
Query 2841 GCACTCACTGTCTTCTTCTGGAGGGTTTTCTGGCAATACCAGAGGTTGCTACCAGAAAGT 2900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2871 GCACTCACTGTCTTCTTCTGGAGGGTTTTCTGGCAATACCAGAGGTTGCTACCAGAAAGT 2930
Query 2901 GCGGACGAGGAAAGGGCAGGCGAAGTGTCTGAGCCATCTCGATCAGGGAGAGGTTCACGA 2960
|| || ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct 2931 GCAGATGAGGAAAGGGCAGGCGAGGTGTCTGAGCCATCTCGATCAGGGAGGGGTTTACGA 2990
Query 2961 GCACCGAGTTTCAAGGAATTGATAAAAGTTGTGGATAAGAGGGAAGCAGAGATCAAGGAG 3020
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2991 GCACCGAGTTTCAAGGAACTGATAAAAGTTGTGGATAAGAGGGAAGCAGAGATCAAGGAG 3050
Query 3021 ATACTTAAGCAGAAGAGTAGCAAGAAACTCAAAAGTACCCAAAGTGCAGCTGGGACTTCA 3080
||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 3051 ATACTGAAGCAGAAGAGTAGCAAGAAACTCAAAACTATCCAAAGTGCAGCTGGGACTTCA 3110
Query 3081 CAATCACAACATGGCGAAATTACTTAATCAGATAAGAGTTTAAATGACTATTAACATACT 3140
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3111 CAATCACAACATGGCGAAATTACTTAAACAGATAAGAGTTTAAATGACTATTAACATAG- 3169
Query 3141 TAGAGGGTAAATAAACTTGTCAGAAGATTTTGTAATAGGAAAGTTCAAGGAACCACAAAG 3200
|| ||| || |||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 3170 -AGGGGG-AA-TAAACTTGTCAGTAGATTTTGTAATAGGAAAGTTCAAGGAACCACAGAC 3226
Query 3201 CAAAGCTAAATTGTAAATCTTTTTTCTGAGTCGTAATGAAAAAAGCATCTTC 3252
|||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 3227 CAAAGCTAAATTGTAAATCTTTTTTCTGAGACGTAATGAAAAAATCATCTTC 3278
> Ahg344999 jgi|Araly1|344999|fgenesh1_pg.C_scaffold_4001341
Length=2877
Score = 2165 bits (1172), Expect = 0.0
Identities = 2245/2758 (81%), Gaps = 94/2758 (3%)
Strand=Plus/Plus
Query 398 GCCAAGCTCTGTGAATGTTGGAGCTCTGTTTACTTATGATTCTTTTATCGGAAGAGCGGC 457
|||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 138 GCCAAGCTCTGTAAACGTTGGAGCTCTGTTTACTTATGATTCTTTCGTTGGAAGAGCGGC 197
Query 458 TAAACCCGCGGTTAAAGCAGCTATGGATGATGTTAATGCTGACCAAAGTGTTCTTAAGGG 517
|||| ||| || | || || || || ||||||||||| || ||| |||| | |||
Sbjct 198 CAAACTTGCGTTTGTGGTGGCCATTGACGACGTTAATGCTGATCAGAGTATTCTCAGGGG 257
Query 518 CATCAAGCTTAATATCATCTTTCAAGACTCAAATTGCAGTGGATTTATCGGCACCATGGG 577
|| ||||||||||||| |||| || ||| ||||||||||||||||| | |||||||||||
Sbjct 258 CACCAAGCTTAATATCGTCTTCCAGGACGCAAATTGCAGTGGATTTGTAGGCACCATGGG 317
Query 578 AGCTTTGCAGCTGATGGAAAACAAAGTGGTTGCAGCCATTGGTCCACAATCTTCAGGGAT 637
|||||||||||| ||||| |||| || ||||||||||||||||||||||||||||| ||
Sbjct 318 AGCTTTGCAGCTAATGGAGAACAGGGTTGTTGCAGCCATTGGTCCACAATCTTCAGGAAT 377
Query 638 TGCTCACATGATCTCCTATGTAGCTAATGAGCTTCATGTACCTCTCTTGTCATTTGGAGC 697
|| |||||| |||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 378 TGGTCACATAATCTCCCATGTAGCTAATGAGCTTCATGTACCTCTCCTGTCATTTGCAGC 437
Query 698 AACGGATCCGACTCTCTCCTCTCTGCAATTTCCTTATTTCCTCCGCACCACGCAGAATGA 757
|||||| |||||||| || || || || | ||||||||||| || ||||| ||||| ||
Sbjct 438 AACGGACCCGACTCTTTCTTCGCTTCAGTACCCTTATTTCCTTCGTACCACACAGAACGA 497
Query 758 TTACTTCCAAATGCATGCGATCGCAGATTTTCTATCATATT-CCGGATGGAGACAAGTCA 816
|||||||| ||| |||| ||||| |||||| |||| |||| ||| ||||||| ||||
Sbjct 498 CTACTTCCAGATGAATGCAATCGCGGATTTTGTATCCTATTTCCG-ATGGAGAGAAGTTG 556
Query 817 TTGCGATATTCGTTGATGATGAGTGTGGCAGGAACGGGATATCTGTCCTT-GGCGATGTA 875
||||||| || || |||||||||| ||| |||||||||||||||||| || |||||| |
Sbjct 557 TTGCGATCTTTGTGGATGATGAGTATGGTAGGAACGGGATATCTGTC-TTAGGCGATATT 615
Query 876 TTAGCCAAGAAACGCT-CGAGGATCTCTTACAAGGCTGCAATTACTCCTGGTGCAGATTC 934
|||||||||||||| | | | ||||||||||||||||||| |||| ||||||||||||
Sbjct 616 TTAGCCAAGAAACG-TGCCAAGATCTCTTACAAGGCTGCATTTACACCTGGTGCAGATAG 674
Query 935 TAGCTCCATCAGAGACTTGTTGGTTTCTGTTAATCTGATGGAATCTCGGGTTTTTGTTGT 994
|||||| ||||| || || |||| |||||||||||||||||||||||| | ||||||||
Sbjct 675 TAGCTCAATCAGTGATTTATTGGCTTCTGTTAATCTGATGGAATCTCGCATCTTTGTTGT 734
Query 995 CCATGTGAATCCTGACTCTGGTTTAAACGTTTTTTCTGTGGCTAAATCTCTTGGAATGAT 1054
|||||||||||||| || ||||||||| | | ||||| || |||||||||||||||||
Sbjct 735 TCATGTGAATCCTGATTCGGGTTTAAACATATACTCTGTCGCCAAATCTCTTGGAATGAT 794
Query 1055 GGCAAGTGGTTATGTTTGGATCGCAACAGACTGGCTTCCTACAGCTATGGATTCCATGGA 1114
|| |||||| ||||| |||||| | || || ||||||| ||||||| |||||||||||||
Sbjct 795 GGGAAGTGGCTATGTCTGGATCACCACTGATTGGCTTCTTACAGCTTTGGATTCCATGGA 854
Query 1115 GCACGT-GGATTC-AGACACGATGGATCTCTTGCAAGGAGTGGTTGCTTTTCGCCACTAC 1172
| ||| |||| | | | | |||||||||||||||||||||||||| ||| | || |||
Sbjct 855 AC-CGTTGGATACCAAAG-CTATGGATCTCTTGCAAGGAGTGGTTGCATTTGGTCATTAC 912
Query 1173 ACAA-TCGAGAGT-AGTGTCAAAAGACAGTTTATGGCGAGATGGAAGAATCTTAGA-CCA 1229
||| | |||||| | ||||| || ||||| || |||||||| || |||||| |||
Sbjct 913 ACACCT-GAGAGTGACAA-CAAAAAACGGTTTAAAGCAAGATGGAAAAACCTTAGATCCA 970
Query 1230 A--A---T-------G--ATG--G-CTTTAACTCTTATGCGATGTATGCTTATGATTCTG 1272
| | | | ||| | ||| || ||||| ||| |||||||||| |||||||
Sbjct 971 AGGAGAGTTTAAAAAGTGATGACGGCTTCAATTCTTACGCGCTGTATGCTTACGATTCTG 1030
Query 1273 TTTGGTTAGTTGCTCGTGCCCTCGATGTTTTCTTCAGAGAAAACAATAACA-TAACTTTC 1331
||||||| || |||| ||| ||||||||||||||||| || ||||| || | ||||||
Sbjct 1031 TTTGGTTGGTAGCTCATGCTCTCGATGTTTTCTTCAGCCAAGGCAATA-CAGTGACTTTC 1089
Query 1332 TCCAACGATCCAAATCTGCACAAA-ACAAATGGTAGCA-CTATTCAGCTATCAGCACT-A 1388
|| || |||||||||||| | || || || | ||||| | ||| |||||||| ||| |
Sbjct 1090 TCTAATGATCCAAATCTG-AGGAATACCAACGATAGCAAC-ATTAAGCTATCAAAACTTA 1147
Query 1389 AGTGTTTTCAATGAAGGAGAGAAGTT-TATGAAGATCATTCTTGGGATGAATCATACTGG 1447
| ||||||||||||| |||| ||| | || || ||||||||| ||||||| |||| ||
Sbjct 1148 ACA-TTTTCAATGAAGGGGAGAGGTTCT-TGCAGGTCATTCTTGAGATGAATTATACAGG 1205
Query 1448 TGTGACGGGTCCAATCCAGTTTGATTCAGATAGAAACCGGGTTAATCCGGCTTATGA-AG 1506
| |||| || | |||| ||||| ||||||| | ||||||| ||||||| || || || |
Sbjct 1206 TCTGACTGGACAAATCGAGTTTAATTCAGAGAAAAACCGGATTAATCCAGCCTACGACA- 1264
Query 1507 TTCTAAACTTAGAAGGTACAGCTCCAC-GCACAGTCGGGTACTGGTCAAATCATTCGGGT 1565
|||||||| || || |||||| ||||| | | ||| ||||||||||| |||||| | |||
Sbjct 1265 TTCTAAACATAAAAAGTACAGGTCCACAG-AGAGTTGGGTACTGGTCGAATCATACAGGT 1323
Query 1566 CTCTCTGTGGT-CCATCCAGAGACCTTGTACTCTAGGCCTCCAAACACATCTACAGCAAA 1624
|||| || || || ||| ||||| || ||||||| |||| ||||||||||| || |||
Sbjct 1324 TTCTCAGTTGTGCC-TCCGGAGACATTATACTCTAAGCCTTCAAACACATCTGCAAAAAA 1382
Query 1625 CCAGCGTCTTAAAG-GAATCATATATCCAGGAGAAGTAACTAA-GCCTCCTCGTGGTTGG 1682
||| |||||||| | || |||||| ||||| ||||||| ||| ||| ||||| ||||||
Sbjct 1383 CCAACGTCTTAATGAGA-TCATATGGCCAGGGGAAGTAA-TAAAGCCACCTCGGGGTTGG 1440
Query 1683 GTGTTTCC-TAATAATGGAAAACCGCTCAGAATCGGGGTGCCTAACCGTGTGAGCTATAC 1741
|| ||||| | | |||||||| || || | ||||||||||||||||||||||||||| |
Sbjct 1441 GT-TTTCCCTGACAATGGAAAGCCTCTGAAAATCGGGGTGCCTAACCGTGTGAGCTACAA 1499
Query 1742 AGATTACGTTTCTAAGGATAAAAACCCGCCTGGCGTTAGAGGCTACTGCATTGATGTCTT 1801
| | || | ||||||||| || ||||| | ||| |||| |||||| |||||||| ||||
Sbjct 1500 AAACTATGCTTCTAAGGACAAGAACCCACTTGGTGTTAAAGGCTATTGCATTGACATCTT 1559
Query 1802 TGAAGCCGCTATTGAATTGCTTCCATATCCTGTTCCACGTACTTATATACTATATGGAGA 1861
|||||| || || |||||||||||||||| |||||||||||||| |||||||| || ||
Sbjct 1560 TGAAGCTGCGGTTCAATTGCTTCCATATCCCGTTCCACGTACTTACATACTATACGGGGA 1619
Query 1862 CGGGAAGAGAAATCCTTCTTATGATAACCTCGTCAA-TGAAGTTGTTGCGGATAATTTTG 1920
|||||||| ||||||||| ||||| |||||| | || |||||||| || ||| ||| |
Sbjct 1620 CGGGAAGAAAAATCCTTCATATGACAACCTCAT-AAGTGAAGTTGCTGAAAATAGTTTCG 1678
Query 1921 ATGTAGCTGTAGGAGATATCACAATCGTCACAAACAGAAC-AAGATATGTAGATTTCACA 1979
||| |||||| || ||| | || || | ||||||||||| ||| | ||||||||||||
Sbjct 1679 ATGCAGCTGTTGGGGATGTTACCATTATTACAAACAGAACCAAGTT-TGTAGATTTCACG 1737
Query 1980 CAACCGTTTATAGAATCAGGGCTTGTGGTGGTGGCTCCGGTTAAGGAGGCCAAGTCTAGT 2039
|| || |||||||||||||||||||||||||| ||||| || |||| |||||||||||||
Sbjct 1738 CAGCCATTTATAGAATCAGGGCTTGTGGTGGTAGCTCCAGTGAAGGGGGCCAAGTCTAGT 1797
Query 2040 CCTTGGTCATTCCTGAAACCATTCACTATAGAGATGTGGGCTGTCACTGGAGGC-TTCTT 2098
|||||||| ||| |||| |||||||||||||||||||||||||| || || | | || ||
Sbjct 1798 CCTTGGTCCTTCTTGAAGCCATTCACTATAGAGATGTGGGCTGTGACCGGTGCCCTT-TT 1856
Query 2099 TCTCTTTGTGGGAGCCATGGTCTGGATTCTCGAACACCGCTTCAACCAAGAATTCCGTGG 2158
||||||||| |||||| | | |||||||| ||||||||||| ||| |||||||||| ||
Sbjct 1857 TCTCTTTGTTGGAGCCGTCATTTGGATTCTTGAACACCGCTTTAACGAAGAATTCCGCGG 1916
Query 2159 CCCTCCTAGGCGTCAACTCATTACCATCTTCTGGTTTAGCTTCTCAACAATGTTCTTCTC 2218
||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1917 ACCTCCTAGGCGTCAAATCATTACCGTCTTCTGGTTTAGCTTCTCTACAATGTTCTTCTC 1976
Query 2219 TCATAGGGAGAACACGGTGAGTTCACTGGGGAGGTTTGTGCTGA-TCATTTGGTTATTCG 2277
||| ||||||||||||||||| || |||||||||||||||| | || | |||||||| |
Sbjct 1977 TCACAGGGAGAACACGGTGAGCACATTGGGGAGGTTTGTGCT-ACTCGTATGGTTATTTG 2035
Query 2278 TGGTTCTGATCATCAACTCGAGCTACACGGCCAGTCTCACTTCGATCCTAACCATTCGAC 2337
||||||| ||||||||||| |||||||| |||||||||||||| ||||| ||| ||| ||
Sbjct 2036 TGGTTCTAATCATCAACTCAAGCTACACAGCCAGTCTCACTTCAATCCTCACCGTTCAAC 2095
Query 2338 AGCTGACATCTCGGATTGAAGGAATAGATAGCT-TGGTAACGAGCAATGAACCAATTGGA 2396
|||| ||||||||||| |||||||| || | || | || | ||||| ||||| ||||||
Sbjct 2096 AGCTAACATCTCGGATAGAAGGAATGGACA-CTCTAATAGCAAGCAACGAACCCATTGGA 2154
Query 2397 GTTCAAGACGGTACCTTTGC-TCGGAACTATCTAATCAACGAGCTTAACATA-CTACCTT 2454
|| ||||| ||||||||||| | |||| ||||| |||| || ||||||||| || || |
Sbjct 2155 GTCCAAGATGGTACCTTTGCGT-GGAAATATCTGGTCAATGAACTTAACATAGCT-CCAT 2212
Query 2455 CAAGGATTGTTCCTCTGAAAGACGAAGAACAGTACCTTTCTGCTCTGCAACGCGGTCCCA 2514
|||| || |||| |||||||| |||||| | || || |||||||| ||||| |||||||
Sbjct 2213 CAAGAATCATTCCACTGAAAGATGAAGAAGAATATCTCTCTGCTCTTCAACGTGGTCCCA 2272
Query 2515 -ACG-CTGGCGGTGTGGCAGCCATTGTAGATGAGCTTCCTTACATCGAAGTTCTTTTGAC 2572
| | | || ||||||||||||||||| || |||||||||||||| ||| ||| ||| |
Sbjct 2273 GA-GAC-GGTGGTGTGGCAGCCATTGTCGACGAGCTTCCTTACATTAAAGCTCTCTTGTC 2330
Query 2573 AAATAGCAACTGCAAATTCCGTACAGTAGGGCAAGAGTTCACACGCACAGGCTGGGG-TT 2631
||| ||||||||||| ||||||||||| || || || ||||| || ||||||||||| ||
Sbjct 2331 AAACAGCAACTGCAAGTTCCGTACAGTTGGACAGGAATTCACCCGGACAGGCTGGGGATT 2390
Query 2632 TCGCATTCCAGAGAGATTCCCCTTTAGCTGTAGACATGTCAACGGCTATCTTGCAACTAT 2691
| || ||||||||||| || ||| ||||||| |||||||| || || ||| |||||||
Sbjct 2391 T-GCGTTCCAGAGAGACTCTCCTCTAGCTGTGGACATGTCGACTGCGATCCTGCAACTGG 2449
Query 2692 CTGAAGAAGGCGAGCTCGAGAAAATCCATAGGAAATGGCTTAACTACAAGCATGAATGCT 2751
|||||||||| | ||||||||||||| | ||||||||||| ||| | || || |||
Sbjct 2450 CTGAAGAAGGAAAACTCGAGAAAATCCGCAAGAAATGGCTTACCTATGACCACGAGTGCA 2509
Query 2752 CGATGCAGATCTCAAACAGTGAGGACTCTCAGCTTTCACTAAAGAGTTTCTGGGGACTCT 2811
| |||||||| ||| ||| || ||| ||| | || || ||||||||||||||||||
Sbjct 2510 CAATGCAGATTTCAGACACAGAAAACTATCAAATCTCGGTACAGAGTTTCTGGGGACTCT 2569
Query 2812 TCCTTATCTGTGGCATCACTTGCTTCATGGCACTCACTGTCTTCTTCTGGAGGGTTTTCT 2871
|||| |||||||||||| ||| ||||| ||||| || |||||| ||||| |||||||
Sbjct 2570 TCCTAATCTGTGGCATCGTTTGGTTCATTGCACTAACACTCTTCTGCTGGAAAGTTTTCT 2629
Query 2872 GGCAATACCAGA-GGTTGCTACCAGAA-AGTGCGGACGAGGAAAGGGC-AGG--CGAAGT 2926
|||||||||| | |||| ||||||| | | | | | || | |||| ||| ||| |
Sbjct 2630 GGCAATACCA-ACGGTTAAGACCAGAAGAAAGTG-ATGGGGTACGGGCGAGGAGCGAGGA 2687
Query 2927 GTCTGAGC-CATCTCGATCAGGGAGAGGTTCACGAGCACCG--AGTTTCAAGGAATTGAT 2983
| | | | | ||| || |||| | ||| ||| || | ||||||||||| |||||
Sbjct 2688 GGCGG-GTTCTTCTAGA---GGGAAAAGTTT--GAGAACGGTGAGTTTCAAGGATTTGAT 2741
Query 2984 AAAAGTTGTGGATAAGAGGGAAGCAGAGATCAAGGAGATACTTAAGCAGAAGAGTAGCAA 3043
|||||||| |||||||| |||||||||||||||||||| |||||| ||||||| || ||
Sbjct 2742 CAAAGTTGTTGATAAGAGAGAAGCAGAGATCAAGGAGATGCTTAAGGAGAAGAGCAGTAA 2801
Query 3044 GAAACTCAAAAGTAC-CCAAAG-TGCAGCTGGGACTTCACAATCACAACATGGCGAAA 3099
|||||||||| | | |||||| || || || || ||| || ||| || || |||||
Sbjct 2802 GAAACTCAAA-GCAGGCCAAAGGTG-AGGTGAGAATTCGCAGTCAAAAGATCACGAAA 2857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122925960790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5