BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05205.1
Length=557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470515 jgi|Araly1|470515|fgenesh2_kg.1__469__AT1G05205.1 808 0.0
> Ahg470515 jgi|Araly1|470515|fgenesh2_kg.1__469__AT1G05205.1
Length=562
Score = 808 bits (437), Expect = 0.0
Identities = 523/563 (93%), Gaps = 11/563 (2%)
Strand=Plus/Plus
Query 5 TTGAGATTTCACCAGGAGCAAGAGAAAGATGAGCGAGACGAGACCAGTGCCGAGGAGAGA 64
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGAGATTTCAGCAGCAGCAAGAGAAAGATGAGCGAGACGAGACCAGTGCCGAGGAGAGA 60
Query 65 GAGTCCATGGGGTTTACCGGAAGGTCACCGTGAGCCCAAAGCTCACCGCTGCAACGATCG 124
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GAGTCCATGGGGGTTACCGGAAGGCCACCGTGAGCCCAAAGCTCACCGCTGCAACGATCG 120
Query 125 TGTTGAAGACGTTATCCAGGCGTTATTCGAGGGAAACCCATTCAAGACAGTTCCAGGACC 184
||| || |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 TGTCGAGGACGTTGTCCAGGCGTTTTTCGAGGGAAACCCATTCAAGACAGTTCCAGGACC 180
Query 185 TTTCAAACTCTTCTACCGATGTATGCGCTCTAAGCCAGGAGAGGAGCCAACAGAGCCATT 244
|||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 181 TTTCAAACTCTTCTACAGATGCATGCGTTCTAAGCCAGGAGAGGAACCAACAGAGCCATT 240
Query 245 CAAATACCTCGACCTGGAACCTCCAAAGAGAGAAGTTAAACTTGAAGAAGCAAAGCTTGA 304
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 CAAATACCTCGATCTGGAACCTCCAAAGAGGGAAGTTAAACTTGAAGAAGCAAAGCTTGA 300
Query 305 GTAAAGTGATATTCACTCCCTTTTTTATTCCTGCATACTTTTTAGCTGAGCGTGTAAGCG 364
|||||||||||||||||||||||||||||| |||| |||||||||| |||| ||||||||
Sbjct 301 GTAAAGTGATATTCACTCCCTTTTTTATTCTTGCAAACTTTTTAGCCGAGCATGTAAGCG 360
Query 365 CCATCACTGTGATTTTAAGTTTACCTTCAA-TATGTGTCAACAACATCTTATTTTCTCTT 423
|||| ||||||||||||||||||||||||| | |||||||||||||||||||||| || |
Sbjct 361 CCATGACTGTGATTTTAAGTTTACCTTCAACT-TGTGTCAACAACATCTTATTTTGTCAT 419
Query 424 AATAAAATTGATACTCGG-AGTTTCATTTCAGTTTTATCTATTGCTTAATCTGTTCACTT 482
|| |||||||||||| || |||||||||||| |||||||||||||| |||||||||||||
Sbjct 420 AACAAAATTGATACTTGGGAGTTTCATTTCAATTTTATCTATTGCTAAATCTGTTCACTT 479
Query 483 GCAAGCTTCTCTCTGAATGTGAACTCTGATGA--A---GA---TGCTTTTTTCATTACGA 534
|||||| |||||||||| |||||||||||||| | || || |||||||||||||
Sbjct 480 GCAAGCCTCTCTCTGAAAGTGAACTCTGATGAGGAAAAGAAGATGATTTTTTCATTACGT 539
Query 535 CTCAGAAAAAAGATTTACAATTT 557
|||||||||||||||||||||||
Sbjct 540 CTCAGAAAAAAGATTTACAATTT 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20336928937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5