BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05210.1
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470516 jgi|Araly1|470516|fgenesh2_kg.1__470__AT1G05210.1 800 0.0
> Ahg470516 jgi|Araly1|470516|fgenesh2_kg.1__470__AT1G05210.1
Length=558
Score = 800 bits (433), Expect = 0.0
Identities = 496/526 (94%), Gaps = 6/526 (1%)
Strand=Plus/Plus
Query 53 GAAGAAAGAAAAGATGGGAGCTTTAGGGAAGCTAATCGACGTAGCTCTCTTCGTATACTT 112
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36 GAAGGAAGAAAAGATGGGAGCTTTAGGGAAGCTAATCGACGTAGCTCTCTTCGTATACTT 95
Query 113 TGTTTCAATGGCGATAATTGCGCCGCTCATCGACGGGCAAACCTCACTTCCTTCAGGAAT 172
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 96 CGCATCAATGGCGATAATTGCGCCGCTCATTGACGGCCAAACCTCACTTCCTTCAGGAAT 155
Query 173 ATATCCAGCGTTTCTCACCGATCTGAAAAGCAAGTACATTGCCGATTTTGGAGATTACTT 232
|| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 156 CTACCCGGCGTTTCTCACCGATCTGAAAAGCAAGTACATTGCCGATTTCGGAGATTACTT 215
Query 233 GCTCATGGAGAAGCCGCATTTCCTAGTTGGACTCGTTTGGCATGAGCTTCTGTTCTTATG 292
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 216 GCTCATGGAGAAGCCGCATTTCTTAGTTGGACTCGTTTGGCATGAGCTTCTCTTCTTATG 275
Query 293 GCCGCTCTCCA-TTGCTAACGTCTACGCCATTCTTGCCGGAAAGTCGTGGTTTGGTACCA 351
|||||||| || ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 276 GCCGCTCT-CAGTTGCTAACGTCTATGCGATTCTTGCCGGAAAGTCGTGGTTTGGTACCA 334
Query 352 CCTGCTTGTTGTATGGAGCTTCCCTCGTCACTTCCATGGCTGCAATCCTAGGAGATATGA 411
||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 335 CCTGCTTGTTGTATGGAGCTTCCGTCGTCACTTCCATGGCCGCAATCCTAGGAGAGATGA 394
Query 412 TAGGTTCAGGGAAGGCATCTGATC-GATTGCTAATGATGTATGTGCCTTTCATGGGTTTT 470
||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 395 TAGGTTCGGGGAAGGCCTCTGA-CAGATTGCTAATGATGTATGTGCCTTTCATGGGTTTT 453
Query 471 GGGATTCTGGCTGTTCTTCGTGGCTTAGTTTATCGATCCACCAAAAACACTGGATCT-TC 529
||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |
Sbjct 454 GGGATTCTGGCTGTTCTTCGTGGTTTAGTTTGTCGATCCACCAAAAACACTGGTTCTGT- 512
Query 530 TGGCAAGAGATCCACTATCATGCCCAGAAGAAAGCTGGCCTGAGAT 575
||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 513 TGGCAAGAGATCCACCATCATGCCTAGAAGAAAGCTGGCCTGAGAT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28401573165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5