BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G05220.1

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470518 jgi|Araly1|470518|fgenesh2_kg.1__472__AT1G05220.2          782    0.0  


> Ahg470518 jgi|Araly1|470518|fgenesh2_kg.1__472__AT1G05220.2
Length=764

 Score =  782 bits (423),  Expect = 0.0
 Identities = 471/495 (95%), Gaps = 0/495 (0%)
 Strand=Plus/Plus

Query  37   ATGGGAGCTTTGGGGAAGCTGATCAACATCTCTCTGTTTTTCTTCTTCGCACTGATGGCT  96
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAGCATTAGGGAAGCTGATCAACATCTCTCTGTTTTTCTTCTTCGCACTGATGGCT  60

Query  97   ATCAATGTACCGCTTCTCAACGGTCAAATACTATTTCCTGGAATCTACCCGAAGCTCCTC  156
            ||||||||||||||||||||||| ||||| || ||||||| |||||||||||| ||||||
Sbjct  61   ATCAATGTACCGCTTCTCAACGGCCAAATTCTTTTTCCTGAAATCTACCCGAAACTCCTC  120

Query  157  ACCGATCTGAAAGACTGGTACAGCTCTGAGTTCAACGATTACCTCTTCATAGAGAAGCCT  216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  ACCGATCTGAAAGACTGGTACAGCTCTGAGTTCAACGATTACCTCTTCATAGAGAAGCCG  180

Query  217  CTTTTCTTCGTTGGACTCGTCTGGCATGAGATCATATTCCTATTGCCTCTCTCCATTGTC  276
            || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  181  CTATTCTTCGTCGGACTCGTCTGGCATGAGATCATATTCCTGTTGCCTCTCTCCATTGTT  240

Query  277  AACATCTACGCCATTCTTACCAGCAAGTCGTGGTTTGGTACCACTTCTTTGTTGTATGGA  336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AACATCTACGCCATTCTTACCAGCAAGTCGTGGTTTGGTACCACTTCTTTGTTGTATGGA  300

Query  337  GCTTCTTTCCTCACTTCCATGGCTGCTATACTTGGAGACATGATAGGTTCAGAGAAGGTG  396
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct  301  GCTTCTTTCCTCACTTCCATGGCTGCTATACTTGGAGACATGATAGGTTCAGGGAAGGTA  360

Query  397  ACTAACAAATTGCTATTGGCGTATTTGCCTTTCGTGGGTCTTGCAATTCTGGCAATGCTT  456
            |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  361  ACTAACAAATTGTTATTGGCGTATTTGCCTTTCGTGGGTCTTGCGATTCTGGCAATGCTT  420

Query  457  CGTGGTCTGGTGACTTGTTCGACCAAAAGATCAACTGTTTTAGCCAGGAGAAAGCTTGCT  516
            |||||||||||   |||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct  421  CGTGGTCTGGTTTTTTGTTCGACCAAGAGATCCACTGTTTTGGCTAGGAGAAAGCTTGCT  480

Query  517  TGAGGATAAACCAGG  531
            ||||||| |||||||
Sbjct  481  TGAGGATGAACCAGG  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25923583560


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5