BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05250.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910203 jgi|Araly1|910203|Al_scaffold_0001_457 1182 0.0
Ahg470522 jgi|Araly1|470522|fgenesh2_kg.1__476__AT1G05240.1 1136 0.0
Ahg919220 jgi|Araly1|919220|scaffold_100501.1 590 1e-167
> Ahg910203 jgi|Araly1|910203|Al_scaffold_0001_457
Length=966
Score = 1182 bits (640), Expect = 0.0
Identities = 879/989 (89%), Gaps = 38/989 (4%)
Strand=Plus/Plus
Query 66 ATGGCGATCAAGAACATTCTCGCCCTTGTGGTTCTTCTTAGCGTGGTTGGAGTTTCTGTC 125
||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGCGAGCAAGAACCTTCTGGCCCTTGTGGTTCTTCTTAGCGTCCTTGGAGTTTCTGTT 60
Query 126 GCCAT-TCCACAGTTG---CTTGA-CCTCGACTACTACCGGTCTAAGTGTCCCAAGGCAG 180
||| | |||| ||||| | | | |||||||||||||| ||||||||||||| | ||||
Sbjct 61 GCC-TATCCAAAGTTGATCCCT-ACCCTCGACTACTACCAGTCTAAGTGTCCCGACGCAG 118
Query 181 AG-GAAATTGTTCGTGGTGTCACAGTACAATATGTTTCTCGCCAGAAAACCCTTGCCGCT 239
|| | ||||||||| ||||||||| ||||||||||||||| || || ||||||||||
Sbjct 119 AGCG-CATTGTTCGTCGTGTCACAGAACAATATGTTTCTCGGAAGCCAAGCCTTGCCGCT 177
Query 240 AAACTTCTAAGGATGCATTTCCATGATTGTTTCGTCAGAGGATGTGATGGTTCCGTTCTT 299
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCGCTTCTAAGGATGCATTTTCATGATTGTTTCGTCAGAGGATGTGATGGTTCCGTTCTT 237
Query 300 CTGAAATCTGCAAAGAATGATGCGGAAAGAGACGCTGTCCCCAACCTGACCCTGAAAGG- 358
|||||| || |||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 238 CTGAAAACTCCAAAGAATGATGCGGAAAGAAACGCTATCCCCAACCTGACCCTGAGAGGC 297
Query 359 TTATGAAGTGGTGGATGCGGCCAAGACAGCGCTGGAGAGGAAGTGTCCTAATCTCATTTC 418
|| |||||||||||||||||||||||||||||| |||| ||||||||| |||||| ||||
Sbjct 298 TT-TGAAGTGGTGGATGCGGCCAAGACAGCGCTCGAGAAGAAGTGTCCCAATCTCGTTTC 356
Query 419 TTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTGGCAGTGATCGGGGGACCATG 478
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 357 TTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTCGCAGTGATCAAGGGACCATG 416
Query 479 GTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCGAAATTGAAC-GATGCATTGC 537
||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 417 GTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCAAAATTG-ACAGATGCATTGC 475
Query 538 TAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAGAAGAACTTTGCCAACAAGG 597
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 476 AAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAGAAGAACTTTGCGGACAAGG 535
Query 598 GTCTTAACGCTAAAGACCTTGTGGTTCTCTCAGGGGGTCACACCATTGGAATCTCTAGTT 657
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 536 GTCTTAACGCTAAAGACCTTGTCGTTCTCTCAGGGGGTCACACCATTGGAATCTCCAGTT 595
Query 658 GCGCTCTCGTCAACAGTCGTCTCTACAACTTCACAGGAAAGGGCGATTCTGACCCATCCA 717
||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 596 GCGCTCTCGTCAACACACGTATCTACAACTTCACAGGAAAGGGCGATTTTGACCCATCCA 655
Query 718 TGAACCCTAGCTACGTGAGGGAATTGAAGA-GAAAGTGCCCGCC-TACAGATTTCAGAA- 774
||||||||||||||||||||| ||||||| ||| |||| ||| ||||||||||| ||
Sbjct 656 TGAACCCTAGCTACGTGAGGGCGTTGAAGAAGAA-GTGCA-GCCCTACAGATTTCA-AAT 712
Query 775 CC-TCACTG-AACATGGACCCAGGCAGTGCGTTGACATTCGACACTCACTACTTCAAGGT 832
|| | |||| || ||||||||||||||||| || ||||||| |||||||||||| |
Sbjct 713 CCGT-ACTGGAA-ATGGACCCAGGCAGTGCCAAGAAATTCGACCCTCACTACTTCACTGC 770
Query 833 CGTGGCTCAGAAGAAAGGGCTCTTCACATCTGACTCTACGCTTCTCGATGACATTGAGAC 892
|||||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||
Sbjct 771 CGTGGCTCAGAAGAAAGGTCTCTTCATATCTGACTCTACCCTTCTCGATGACCTTGAGAC 830
Query 893 CAAAAACTACGTTCAGACTCAGGCCATTCTCCCTCCTGTGTTTTCTTCTTTCAATAAAGA 952
|||| |||||| ||||| | | | | | | ||| ||| | |||||||||
Sbjct 831 CAAACTCTACGTCCAGAC-C-G-CTAA-CGA------G-GTTA-CTT-T--CAATAAAGA 875
Query 953 TTTCTCCGATTCCATGGTCAAACTTGGTTTCGTCCAAATTCTTACCGGCAAAAATGGTGA 1012
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 876 TTTCTCCGATTCCATGGTCAAACTTGGTAAAGTCCAAATTCTTACCGGGAAAAATGGTGA 935
Query 1013 GATCAGGAAGAGATGCGCCTTCCCTAACT 1041
|||||||||||||||||||||||||||||
Sbjct 936 GATCAGGAAGAGATGCGCCTTCCCTAACT 964
> Ahg470522 jgi|Araly1|470522|fgenesh2_kg.1__476__AT1G05240.1
Length=1043
Score = 1136 bits (615), Expect = 0.0
Identities = 844/949 (89%), Gaps = 38/949 (4%)
Strand=Plus/Plus
Query 162 TCTAAGTGTCCCAAGGCAGAG-GAAATTGTTCGTGGTGTCACAGTACAATATGTTTCTCG 220
|||||||||||| | |||||| | ||||||||| ||||||||| |||||||||||||||
Sbjct 1 TCTAAGTGTCCCGACGCAGAGCG-CATTGTTCGTCGTGTCACAGAACAATATGTTTCTCG 59
Query 221 CCAGAAAACCCTTGCCGCTAAACTTCTAAGGATGCATTTCCATGATTGTTTCGTCAGAGG 280
|| || |||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 60 GAAGCCAAGCCTTGCCGCTTCGCTTCTAAGGATGCATTTTCATGATTGTTTCGTCAGAGG 119
Query 281 ATGTGATGGTTCCGTTCTTCTGAAATCTGCAAAGAATGATGCGGAAAGAGACGCTGTCCC 340
||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||
Sbjct 120 ATGTGATGGTTCCGTTCTTCTGAAAACTCCAAAGAATGATGCGGAAAGAAACGCTATCCC 179
Query 341 CAACCTGACCCTGAAAGG-TTATGAAGTGGTGGATGCGGCCAAGACAGCGCTGGAGAGGA 399
|||||||||||||| ||| || |||||||||||||||||||||||||||||| |||| ||
Sbjct 180 CAACCTGACCCTGAGAGGCTT-TGAAGTGGTGGATGCGGCCAAGACAGCGCTCGAGAAGA 238
Query 400 AGTGTCCTAATCTCATTTCTTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTGG 459
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 AGTGTCCCAATCTCGTTTCTTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTCG 298
Query 460 CAGTGATCGGGGGACCATGGTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCGA 519
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 CAGTGATCAAGGGACCATGGTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCAA 358
Query 520 AATTGAAC-GATGCATTGCTAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAG 578
||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AATTG-ACAGATGCATTGCAAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAG 417
Query 579 AAGAACTTTGCCAACAAGGGTCTTAACGCTAAAGACCTTGTGGTTCTCTCAGGGGGTCAC 638
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 AAGAACTTTGCGGACAAGGGTCTTAACGCTAAAGACCTTGTCGTTCTCTCAGGGGGTCAC 477
Query 639 ACCATTGGAATCTCTAGTTGCGCTCTCGTCAACAGTCGTCTCTACAACTTCACAGGAAAG 698
|||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 478 ACCATTGGAATCTCCAGTTGCGCTCTCGTCAACACACGTATCTACAACTTCACAGGAAAG 537
Query 699 GGCGATTCTGACCCATCCATGAACCCTAGCTACGTGAGGGAATTGAAGA-GAAAGTGCCC 757
||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 538 GGCGATTTTGACCCATCCATGAACCCTAGCTACGTGAGGGCGTTGAAGAAGAA-GTGCA- 595
Query 758 GCC-TACAGATTTCAGAA-CC-TCACTG-AACATGGACCCAGGCAGTGCGTTGACATTCG 813
||| ||||||||||| || || | |||| || ||||||||||||||||| || |||||
Sbjct 596 GCCCTACAGATTTCA-AATCCGT-ACTGGAA-ATGGACCCAGGCAGTGCCAAGAAATTCG 652
Query 814 ACACTCACTACTTCAAGGTCGTGGCTCAGAAGAAAGGGCTCTTCACATCTGACTCTACGC 873
|| |||||||||||| | |||||||||||||||||| ||||||| |||||||||||| |
Sbjct 653 ACCCTCACTACTTCACTGCCGTGGCTCAGAAGAAAGGTCTCTTCATATCTGACTCTACCC 712
Query 874 TTCTCGATGACATTGAGACCAAAAACTACGTTCAGACTCAGGCCATTCTCCCTCCTGTGT 933
||||||||||| ||||||||||| |||||| ||||| | | | | | | ||
Sbjct 713 TTCTCGATGACCTTGAGACCAAACTCTACGTCCAGAC-C-G-CTAA-CGA------G-GT 761
Query 934 TTTCTTCTTTCAATAAAGATTTCTCCGATTCCATGGTCAAACTTGGTTTCGTCCAAATTC 993
| ||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 762 TA-CTT-T--CAATAAAGATTTCTCCGATTCCATGGTCAAACTTGGTAAAGTCCAAATTC 817
Query 994 TTACCGGCAAAAATGGTGAGATCAGGAAGAGATGCGCCTTCCCTAACT-A--A-TTTGGA 1049
||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 818 TTACCGGGAAAAATGGTGAGATCAGGAAGAGATGCGCCTTCCCTAACTGACTAATTTGGA 877
Query 1050 TCGATCAGACCGGGTTTCGGATGATTTTGAGTCTACACG-tttttctct 1097
|| ||||||| ||||| || ||||||||||||||| ||| ||||| |||
Sbjct 878 TCCATCAGAC-GGGTTCCGTATGATTTTGAGTCTAAACGCTTTTT-TCT 924
> Ahg919220 jgi|Araly1|919220|scaffold_100501.1
Length=1033
Score = 590 bits (319), Expect = 1e-167
Identities = 800/1021 (78%), Gaps = 77/1021 (8%)
Strand=Plus/Plus
Query 44 AAGA-AAGGAGAGAGAGACGGTAATGGCGATCAAGAACATTCTCGCCCTTGTGGTTCTTC 102
|||| || |||||||||| ||||||||||| |||||| |||| || |||||||||||||
Sbjct 1 AAGAGAA-GAGAGAGAGA--GTAATGGCGATAAAGAACCTTCTTGCTCTTGTGGTTCTTC 57
Query 103 TTAGCGTGGTTGGAGTTTCTGTCGCCATTCCACA-GTTGCTTGACCTCGACTACTACCGG 161
| | || ||||||| || || | | || | | | | |||||||| |||| || |
Sbjct 58 TAAATGTCCTTGGAGTATCAGTTG-C--TCAAAAGGGT-CTTGACCTTAACTATTA-CAA 112
Query 162 TCTA-A-GTGTCCCAAGGCAGAGGAAATTGTTCGT-GGTGTCACAGTACAATATGTTTCT 218
| | | |||||| | | || | |||| || | |||||||||| ||||||||||||
Sbjct 113 AC-ACAGGTGTCCTGACGTTGAAGCTATTG-TCCTCCGTGTCACAGTTCAATATGTTTCT 170
Query 219 CGCCAGAAAACCCTTGCCGCTAAACTTCTAAGGATGCATTTCCATGATTGTTTCGTCAGA 278
|||||| | ||||| || ||||||||| ||||||| ||||||||||||||||||
Sbjct 171 CGCCAGCCGAGTCTTGCTGCCGCGCTTCTAAGGTTGCATTTTCATGATTGTTTCGTCAGA 230
Query 279 GGATGTGATGGTTCCGTTCTTCTGAA-ATCTGCAA-AGAATGATGCGGAAAGAGACGCTG 336
||||||||||||||||||||||| || |||| | | | ||||||||||||| | |||||
Sbjct 231 GGATGTGATGGTTCCGTTCTTCT-AAGATCT-CGAGACAATGATGCGGAAATAAACGCTC 288
Query 337 TCCCCAACCTGACCCTGAAAGG-TTATGAAGTGGTGGATGCGGCCAAGACAGCGCTGGAG 395
|||||| |||| |||| | ||| || ||||||||| ||||| |||||| ||||| | |||
Sbjct 289 TCCCCAGCCTGTCCCTTAGAGGCTT-TGAAGTGGTCGATGCCGCCAAGTCAGCGGTCGAG 347
Query 396 AGGAAGTGTCCTA-ATCTCATTTCTTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGC 454
| ||| ||||| | | |||||||||||||| |||| ||||| || || ||||| ||
Sbjct 348 AAGAAATGTCCCGGAG-TGGTTTCTTGCGCTGATATTCTCGCCTTAGTGGCGAGAGACGC 406
Query 455 CGTGGCAGTGATCGGGGGACCATGGTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCAT 514
||| |||||||| |||||| | ||||| ||||||||||| || |||||||| |||||
Sbjct 407 CGTCTCAGTGATCAACGGACCAAGTTGGCCAGTTCCATTGGGTCGGAGGGATGGTCGCAT 466
Query 515 CTCGAAATTGAACGATGC-ATTGCTAAATTTACCATCTCCTTTCGCCG-ACATAAA-GAC 571
||| || || || | | | | ||| || ||| || |||||||| | | ||| | |
Sbjct 467 CTC-AA---GA-CGTTCCGAG-GTTAACTT-ACCTTCGCCTTTCGCTGGA-ATAGCTGCC 518
Query 572 GCTGAAGA-AGAACTT-TGC-CAACAAGGGTCTTAACGCTAAAGACCTTGTGGTTCTCTC 628
||||| | || ||| | | | ||||||||||||| ||| |||||| || ||||||||
Sbjct 519 -CTGAA-ACAGGGCTTCTTCGC--CAAGGGTCTTAACACTACAGACCTCGTCGTTCTCTC 574
Query 629 AGGGGGTCACACCATTGGAATCTCTAGTTGCGCTCTCGTCAACA-GTCGTCTCTACAACT 687
||| |||||||||||||||||||||| ||||| |||| |||||| | ||| |||||||||
Sbjct 575 AGGAGGTCACACCATTGGAATCTCTAATTGCGGTCTCATCAACAAG-CGTATCTACAACT 633
Query 688 TCACAGG-AAAGGGCGATTCTGACCCATCCATGAACCCTAGCTACGTGAGGGAATTGAAG 746
| || || ||||| ||||| |||||| |||||||| || |||||||| ||| ||||||||
Sbjct 634 TTACGGGCAAAGG-CGATTTTGACCCGTCCATGAATCCGAGCTACGTCAGGAAATTGAAG 692
Query 747 AGAAAG-TGCCCGCCTACA-GATTTCA-GAACCTCACTGAACATGGACCCAGGCAGTG-C 802
| |||| ||| ||||| | ||||| | || || || || | |||||||||||||||| |
Sbjct 693 A-AAAGGTGCAAGCCTA-ATGATTTTAAGACCC-CAGTGGAGATGGACCCAGGCAGTGTC 749
Query 803 GTTGACA-TTCGACACTCACTACTTC-A-AGGTCGTGGCTCAGAAGAAAGGGCTC-TTCA 858
|| | ||| || ||||||||||| | | | |||||||| ||||| ||| | ||||
Sbjct 750 AA-GA-AGTTCAACTCTCACTACTTCGACAA-T-GTGGCTCAAAAGAA-GGGTTTGTTCA 804
Query 859 CATCTGACTCTACGCTTCTCGATGA-CATTGAGACCAAAAACTA---CGTTCAGACTCAG 914
|||||||||| || ||||||||||| | | |||||||||| ||| || | |||| ||
Sbjct 805 CATCTGACTCAACACTTCTCGATGATCCT-GAGACCAAAAGCTATATCGAT-AGAC--AG 860
Query 915 GCCATT-CTCCCTCCTGTGTTTTCTTCTTTCAATAAAGATTTCTCCGATTCCATGGTCAA 973
| || || || | || | | |||| ||| ||||||||||||||||| ||||||||
Sbjct 861 G---TTGCTACCGC-TG-GCT--CTTCATTCCCCAAAGATTTCTCCGATTCGATGGTCAA 913
Query 974 ACTTGGTTTCGTCCAAATTCTTACCGGCAAAAATGGTGAGATCAGGAAGAGATGCGCCTT 1033
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 914 ACTTGGTTTCGTCCAAATTCTTACCGGGGAAAAGGGTGAGATCAGGAAGAGATGCGCCTT 973
Query 1034 C 1034
|
Sbjct 974 C 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5