BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05260.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470523 jgi|Araly1|470523|fgenesh2_kg.1__477__AT1G05260.1 1657 0.0
> Ahg470523 jgi|Araly1|470523|fgenesh2_kg.1__477__AT1G05260.1
Length=1125
Score = 1657 bits (897), Expect = 0.0
Identities = 996/1043 (95%), Gaps = 9/1043 (1%)
Strand=Plus/Plus
Query 51 AAATTTAAAGATGAATTGCTTGATAGCTATAGCTCTTTCAGTCTCTTTCTTTCTTGTGGG 110
||||||||||||||||| | ||| ||||||| |||||||| |||||||||||||||||||
Sbjct 27 AAATTTAAAGATGAATTACCTGAGAGCTATATCTCTTTCACTCTCTTTCTTTCTTGTGGG 86
Query 111 AATTGTTGGACCGATCCAAGCTCAATTGCAGATGAATTTCTATGCCAATTCTTGTCCTAA 170
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 AATGGTTGGACCGATCCAAGCTCAATTGCAGATGAATTTCTATGCCAATTCTTGTCCTAA 146
Query 171 TGCTGAAAAGATTGTTCAAGATTTTGTTTCAAACCACGTTTCTAATGCTCCTTCTCTTGC 230
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 147 TGCCGAAAAGATTGTTCAAGATTTTGTTTCAAACCACATTTCTAATGCTCCTTCTCTTGC 206
Query 231 TGCTGCTCTCATTAGAATGCATTTCCATGACTGTTTTGTCCGAGGTTGTGATGGATCAGT 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TGCTGCTCTCATTAGAATGCATTTCCATGACTGTTTTGTCCGAGGTTGTGATGGATCAGT 266
Query 291 GCTTATAAACTCAACGTCAGGAAACGCAGAGAGAGACGCGACTCCTAACCTAACGGTTCG 350
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 267 GCTTATAAACTCAACGTCTGGAAACGCAGAGAGAGACGCAACTCCTAACCTAACGGTTCG 326
Query 351 AGGGTTTGGCTTCATCGACGCAATTAAATCTGTGCTTGAAGCTCAATGCCCTGGAATTGT 410
|||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||
Sbjct 327 AGGGTTTGGCTTCATCGACGCAATCAAAGCCGTGCTTGAAGCTCAGTGCCCTGGAATTGT 386
Query 411 CTCTTGCGCTGATATTATCGCTCTAGCTTCTCGCGACGCTGTCGTTTTCACCGGAGGACC 470
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 387 CTCTTGCGCTGATATTATCGCTCTAGCATCTCGTGACGCTGTCGTTTTCACCGGAGGACC 446
Query 471 GAATTGGAGTGTACCGACCGGAAGAAGAGACGGGAGGATATCAAACGCAGCGGAGGCATT 530
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 447 GAATTGGAGTGTACCGACCGGAAGAAGAGACGGGAGGATATCAAACGCATCGGAGGCATT 506
Query 531 AGCCAACATTCCTCCTCCAACCAGTAATATCACCAATCTTCAGACACTCTTTGCAAACCA 590
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 507 AGCCAACATTCCTCCTCCGACCAGTAATATCACTAATCTTCAGACACTCTTTGCAAACCA 566
Query 591 AGGACTTGATCTTAAGGACCTCGTTTTACTATCCGGGGCTCACACTATTGGTGTATCTCA 650
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 567 AGGACTTGATCTTAAGGACCTTGTTTTACTCTCCGGGGCTCACACTATTGGTGTATCTCA 626
Query 651 CTGCTCGTCTTTCACAAACCGTCTCTACAATTTTACG-GGTCGTGGAGGCCAAGATCCGG 709
||||||||||||||||||||||||||||||||| | | |||||||||| ||||||||| |
Sbjct 627 CTGCTCGTCTTTCACAAACCGTCTCTACAATTTCA-GTGGTCGTGGAGACCAAGATCCAG 685
Query 710 CTTTGGACAGCG-AGTACGCAGCCAATCTCAAGTCTAGAAAATGTCCTAGCCTCAACGAT 768
| || ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 686 CCTTAGACAGCGCA-TACGCAGCCAATCTCAAGTCTAGGAAATGTCCTAGCCTCAACGAC 744
Query 769 AACAAGACCATCGTAGAGATGGATCCAGGGAGCCGCAAAACATTTGATCTAAGTTATTAC 828
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 745 AACAAGACCATCGTTGAGATGGATCCAGGGAGCCGCAAAACATTTGATCTTAGTTATTAC 804
Query 829 CAGCTCGTACTCAAGCGTAGAGGTCTGTTTCAATCAGACTCTGCTCTCACCACTAACCCC 888
|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 805 CAGCTCGTTCTCAAGCGTAAAGGTCTGTTTCAGTCAGACTCTGCTCTCACCACTAACCCC 864
Query 889 ACAACACTTTCAAACATAAACCGGATCTTGACGGGTTCGGTGGGGAGTTTCTTCTCTGAG 948
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 865 ACAACACTCTCAAACATAAACCGGATCTTGACGGGTTCGGTGGAGAGTTTCTTCTCTGAG 924
Query 949 TTTGCCAAGTCAATGGAGAAAATGGGTCGGATCAATGTCAAGACTGGTTCAGCTGGAGTG 1008
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TTTGCCAAGTCGATGGAGAAAATGGGTCGGATCAATGTCAAGACTGGTTCAGCTGGAGTG 984
Query 1009 GTTAGGAGGCAATGTTCCGTTGCAAATAGTTAAGGGGTGGAA-ATGTAAAAGATTTGGGA 1067
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 985 GTTAGGAGGCAATGTTCCGTTGCAAATAGTTAAGGGGTT-AATATGTAAAAGATTTGGGA 1043
Query 1068 GCTTGTGGGGG-T-AGTTGTGAT 1088
| ||||||||| | | |||||||
Sbjct 1044 GTTTGTGGGGGATGA-TTGTGAT 1065
Score = 75.0 bits (40), Expect = 1e-12
Identities = 62/71 (87%), Gaps = 8/71 (11%)
Strand=Plus/Plus
Query 1118 TGATGTGGCCTTTTGGGATTTGTGTGTATGGATTTTGTTACAGACTTCGTCAATAAAGAA 1177
||||||||||||||||||||||||||||||||||||||| | | | | |||||||||
Sbjct 1062 TGATGTGGCCTTTTGGGATTTGTGTGTATGGATTTTGTT-C-G--T-C---AATAAAGAA 1113
Query 1178 ATAAAAAGATT 1188
||||||| |||
Sbjct 1114 ATAAAAATATT 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5