BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05270.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919222 jgi|Araly1|919222|scaffold_100503.1 1881 0.0
Ahg344992 jgi|Araly1|344992|fgenesh1_pg.C_scaffold_4001334 359 3e-98
Ahg887806 jgi|Araly1|887806|Al_scaffold_0125_4 211 1e-53
> Ahg919222 jgi|Araly1|919222|scaffold_100503.1
Length=1160
Score = 1881 bits (1018), Expect = 0.0
Identities = 1114/1161 (96%), Gaps = 4/1161 (0%)
Strand=Plus/Plus
Query 86 CCATCATCTCCTCGATTTCGATGACGATAGAGCCGACGC-A--ATCGCCGTCTTCGGAGC 142
||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 1 CCATCATCTCCTCGATTTCGATGACGATAGAGCCGACGCAATCATCGCCGTCGTCGGAGC 60
Query 143 CGGAGGTTCACTCTGGAGAGGACTTCGTTCACATCGATGACCCTAGGCCTACCGGCGATA 202
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGGAGGTCCACTCTGGCGAGGACTTCGTTCACATCGATGACCCTAGGCCTACCGGCGATA 120
Query 203 TCTCTTTAAGCGACAGCATAGTTAATGTGGAGAAGGATGAACTGCTCGACGAAGCGGCGG 262
|||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 121 TCTCGTTAAGTGACAGCATAGTGAATGTGGACAAGGATGAACTGCTCGACGAAGCGGCGG 180
Query 263 AGGAAGAATTTAGAGGCTCCGATTCTGTGTTTAGCGGCGGCGATGGCGGTGGAGCGGATG 322
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 181 AGGAAGAATTTAGAGGCTCCGATTCCGTTTTTAGCGGCGGCGATGGCGGTGGAGCGGATG 240
Query 323 ATGATGGCGGCGAGTGTTCATCGGAGGCTACTAAAGTGGAGCTACCGGAGGAATTGGCGA 382
|||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 241 ATGATGGCGGCGAGAGTTCATCGGAGACGATTAAAGTGGAGCTACCGGAGGAATTGGCGA 300
Query 383 AAAGTGTTGTGATTCTGACGTGCGAGTCAACAGCGGATGGTGGATCTTGCGATGTGTACT 442
|| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 AAGGCGTTGTGATTCTGACGTGCGAGTCCACAGCGGATGGTGGATCTTGCGATGTGTACT 360
Query 443 TGGTTGGTACTGCTCATGTATCAAAGCAATCCTGTCTTGAAGTTGAAGCAATAATCAGCA 502
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGGTTGGGACTGCTCATGTATCAAAGCAATCCTGTCTTGAAGTTGAAGCAATAATCAGCA 420
Query 503 TCTTGAAACCAGAGGTTGTCTTCGTTGAATTGTGTTCGAGCCGATTGTCTGTTCTCAAAC 562
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 421 TCTTGAAACCAGAGGTTGTCTTCGTGGAGTTGTGTTCGAGCCGATTGTCTGTTCTCAAAC 480
Query 563 CTCAAACATTGAAGATTCCAACCATGTCGGACATGATAGAAAGTTGGAAGCAGAAACAGA 622
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCAGACTTTGAAGATTCCAACCATGTCGGACATGATAGAAAGTTGGAAGCAGAAACAGA 540
Query 623 ACACATTCGGAATACTTTATGGATGGTTTCTTGCAAAGATCGCCAGTCATCTTGAGGTTT 682
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACACATTTGGAATACTTTATGGATGGTTTCTTGCAAAGATCGCCAGTCATCTTGAGGTTT 600
Query 683 TTCCTGGTGCTGAGTTTCGTGTGGCGTATGAAGAGGCGATTAAATATGGCGGCAAGGTGA 742
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCCTGGTGCTGAGTTTCGTGTAGCGTATGAAGAGGCGATTAAATATGGCGGCAAGGTGA 660
Query 743 TACTTGGTGATCGTCCTGTACAGATTACGTTAAAGAGAACATGGGCCAAGATGCCTCTAT 802
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 TACTTGGTGATCGTCCTGTACAGATTACGTTAAAAAGAACATGGGCCAAGATGCCTCTAT 720
Query 803 GGCACAAGGTTAAGTTTTTATACTCCATACTGTTTCAAGCTGTCTTCTTGCCGGGCGCTG 862
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 GGCACAAGGTAAAGTTCTTATACTCCATACTGTTTCAAGCTGTCTTCTTGCCGAGCGCTG 780
Query 863 AGGAACTCGAGAAAATGCTGAAAGATATGGACAATGTGGATATGGTGACTTTGGTGATTC 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 AGGAACTCGAGAAAATGCTGAAAGATATGGACAATGTGGATATGGTGACTTTGGTAATTC 840
Query 923 AAGAAATGAGCAAGGAATTTCCAACTCTCATGGATACAATTGTGCATGAGCGAGACCAGT 982
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGAAATGAGCAAGGAATTTCCGACTCTCATGGATACAATTGTGCATGAGCGAGACCAGT 900
Query 983 ACATGGCATCCTCTTTGCTGAGAGTTGCAAGTGACCATAGTTCGGTTGTAGCAGTTATCG 1042
||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 901 ACATGGCATCCTCGTTGCTGAGAGTTGCAGGTGAGCATAGTTCGGTTGTAGCAGTTATCG 960
Query 1043 GAAAAGGACATATTAATGGAATCAAGAAGAATTGGAAGCAACCTATTACGATGAATGATC 1102
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 961 GAAAAGGGCATATTAATGGAATTAAGAAGAATTGGAAGCAACCTATAACGATGAATGATC 1020
Query 1103 TAATGGAGATACCAAGCGACAAGTCAGTGTTTACGTTAAAGAGAATAATATCATCAGTGG 1162
||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||
Sbjct 1021 TAATGGAGATACCGAGCGACCAGTCAGTGTTTACGATAAAGAGGATAATATCATCAGTGG 1080
Query 1163 CAGTTGCAGTTGCAGGGACAGCTATAGTTTCGGGTATACTTCTTTCAAGAAGAAAGTGAA 1222
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1081 CAATTGCAGTTGCAGGGACAGCTATAGTTTCGGGTATACTTCTTGCAAGAAGAAGGTGAA 1140
Query 1223 AAAGGATTGTAATTGGGGCAG 1243
||| ||||||||||||||||
Sbjct 1141 AAAT-ATTGTAATTGGGGCAG 1160
> Ahg344992 jgi|Araly1|344992|fgenesh1_pg.C_scaffold_4001334
Length=1044
Score = 359 bits (194), Expect = 3e-98
Identities = 367/450 (82%), Gaps = 14/450 (3%)
Strand=Plus/Plus
Query 673 CTTGAGGTTTTTCCTGGTGCTGAGTTTCGTGTGGCGTATGAAGAGGCGATTAAATATGGC 732
||||| ||||||||||||||||| ||||||||||| | ||||||||| | ||||||||
Sbjct 502 CTTGAAGTTTTTCCTGGTGCTGAATTTCGTGTGGCATTTGAAGAGGCAAACAAATATGGT 561
Query 733 GGC-AAGGTGATACTTGGTGATCGTCCTGTACAGATTACGTTAAAGAGAACATGGGCCAA 791
||| | ||| | | ||| |||||||| |||||||| ||| || |||||||||||| ||
Sbjct 562 GGCGCA-GTGTTTCCTGGCGATCGTCCAGTACAGATCACGCTACAGAGAACATGGGGTAA 620
Query 792 GATGCCTCTATGGCACAAGGTTAAGTTTTTATACTCCATACTGTTTCAAGCTGTC-TTCT 850
||||||||||||||||| | || | | ||| |||| ||| |||||||||| |||
Sbjct 621 AATGCCTCTATGGCACAAAATAAAACTAGTGTACAGCATAGTGTCTCAAGCTGTCTTTC- 679
Query 851 TGCCG-GGCGCTGAGGAACTCGAGAAAATGCTGAAAGATATGGA-CAATG-TGGATATGG 907
||||| | | |||||||| ||||| ||||||||||| || || | ||| | ||||||
Sbjct 680 TGCCGAAAC-CCGAGGAACTTGAGAAGATGCTGAAAGACAT-GAGCGATGCT-GATATGC 736
Query 908 TGACTTTGGTGATTCAAGAAATGAGCAAGGAATTTCCAACTCTCATGGATACAATTGTGC 967
|||| |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct 737 TGACATTGGTGATTCAAGAAATGAGCAAGGAATTTCCGTCTCTCATGGAGACACTTGTGC 796
Query 968 ATGAGCGAGACCAGTACATGGCATCCTCTTTGCTGAGAGTTGCAAGTGACCATAGTTCGG 1027
|||||||||| |||||||||||| | |||| ||||| |||||||||| |||||||| |
Sbjct 797 ATGAGCGAGATAAGTACATGGCATATTATTTGTTGAGACTTGCAAGTGAGCATAGTTCAG 856
Query 1028 TTGTAGCAGTTATCGGAAAAGGACATATT-AATGGAATCAAGAAGAATTGGAAGCAACCT 1086
| || |||||| |||| | ||| ||| || || ||| |||||||||||||||| ||||||
Sbjct 857 TCGTGGCAGTTGTCGGTAGAGGGCATCTTCAAGGGA-TCAAGAAGAATTGGAACCAACCT 915
Query 1087 ATTA-CGATGAATGATCTAATGGAGATACC 1115
|| | | || || || ||| ||||| ||||
Sbjct 916 ATAAAC-ATAAAGGAACTATTGGAGTTACC 944
> Ahg887806 jgi|Araly1|887806|Al_scaffold_0125_4
Length=858
Score = 211 bits (114), Expect = 1e-53
Identities = 201/242 (83%), Gaps = 10/242 (4%)
Strand=Plus/Plus
Query 879 GCTGAAAGATATGGA-CAATG-TGGATATGGTGACTTTGGTGATTCAAGAAATGAGCAAG 936
||||||||| || || | ||| | |||||| |||| || ||||||||||||||||||||
Sbjct 522 GCTGAAAGACAT-GAGCGATGCT-GATATGCTGACAATGATGATTCAAGAAATGAGCAAG 579
Query 937 GAATTTCCAACTCTCATGGATACAATTGTGCATGAGCGAGACCAGTACATGGCATCCTCT 996
||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| |||
Sbjct 580 GAATTTCCATCTCTCATGGAGACACTTGTGCATGAGCGAGATAAGTACATGGCATA-TCT 638
Query 997 -TTGCTGAGAGTTGCAAGTGACCATAGTTCGGTTGTAGCAGTTATCGGAAAAGGACATAT 1055
||| ||||| |||||||||| |||||||| || || |||||| |||| | ||| ||| |
Sbjct 639 ATTGTTGAGACTTGCAAGTGAGCATAGTTCAGTCGTGGCAGTTGTCGGTAGAGGGCATCT 698
Query 1056 T-AATGGAATCAAGAAGAATTGGAAGCAACCTATTA-CGATGAATGATCTAATGGAGATA 1113
| || ||| |||||||||||||||| |||||||| | | || || || ||| ||||| ||
Sbjct 699 TCAAGGGA-TCAAGAAGAATTGGAACCAACCTATAAAC-ATAAAGGAACTATTGGAGTTA 756
Query 1114 CC 1115
||
Sbjct 757 CC 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5