BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05280.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919223 jgi|Araly1|919223|scaffold_100504.1 1997 0.0
> Ahg919223 jgi|Araly1|919223|scaffold_100504.1
Length=1429
Score = 1997 bits (1081), Expect = 0.0
Identities = 1268/1360 (93%), Gaps = 5/1360 (0%)
Strand=Plus/Plus
Query 112 ATGTGTCTTCCATTTCGACCCGTCTCGAAAACATATT-AT--TCGTCTTCTTCTTCGACT 168
||||||||||||||| |||||||||||||||| |||| | || |||||||||||||||
Sbjct 21 ATGTGTCTTCCATTTAGACCCGTCTCGAAAACCTATTCTTCCTCTTCTTCTTCTTCGACT 80
Query 169 ATCGTGACGCGTATGGTAAACTGCATACTACTTTTTGTATTCATTTTGTTGGTCTACCTC 228
|||| |||||||||| |||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 81 ATCGCGACGCGTATGATAAATTGCATACTAATTTTTGTATTCATTTTCTTGGTCTACCTC 140
Query 229 CTCATCTCGGCCTCAAGACTTCAATCTAAAAACTCTATTCATGCATACTTCTCATCTTCT 288
||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||
Sbjct 141 CTCATCTCGGCCTCAAGGCTTCAATCTAAAGACTCTATTCATGCCTACTTCTCATCTTCT 200
Query 289 GATCAAGATCAATCTCAGAGCCCGACAAAAATCGAGCACATCGTCTTTGGGATAGGCTCA 348
||||||||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||
Sbjct 201 GATCAAGATCAATCTCAGATCCCAACAAAAATCGAGCACGTCGTATTTGGGATAGGCTCA 260
Query 349 AGCGCGATCTCGTGGCGTGCACGTAGAGAATACGTTAAGCTTTGGTGGGATGCTCAGAAA 408
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AGCACGAACTCGTGGGGTGCACGTAGAGAATACGTTAAGCTTTGGTGGGATGCTCAGAAA 320
Query 409 ATGAGAGGCTGCGTCTTTGTTGAGCGTCCCTTGCCGTCTTCTCAAAACCACACAGATTCA 468
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 321 ATGAGAGGCTGCGTCTTTGTTGAGCGTCCCTTTCCGTCTTCGGAAAACCACACAGATTCA 380
Query 469 TATCTCCTTCCTCCGGTTTGTGTTTCCCAAGATACTTCCCGGTTCAGGTACACTTGGAGA 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AATCTCCTTCCTCCGGTTTGTGTTTCCCAAGATACTTCCCGGTTCAGGTACACTTGGAGA 440
Query 529 GGCGGTGACAGAAACGCGATCCGAATCGCGCGGTGCGTTCTAGAAACTGTCAGGCTATTC 588
| |||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct 441 GACGGTGACAGAAACGCGATCCGAATAGCCCGGTGCGTTCTAGAAACCGTCAGACTATTC 500
Query 589 AACACCTCCTCAGAAGAAGTAAGATGGTACGTATTTGGAGACGACGACACGATTTTCATT 648
|| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 501 AATACCTCCTCAAAAGAAGTAAGGTGGTACGTATTTGGAGACGACGACACGATTTTTATA 560
Query 649 CCTGAAAACCTCGCTCGAACTCTCTCCAAATACGACCACACATCATGGTATTACATAGGA 708
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CCTGAAAATCTCGCTCGAACTCTCTCCAAATACGACCACACATCATGGTATTACATAGGA 620
Query 709 TCAACCTCGGAGATTTATCACCAGAACTCTATGTTCGGACACGACATGGCGTTCGGGGGT 768
|||||||| ||||||||||||||||| || ||||| |||||| |||||||||| || |||
Sbjct 621 TCAACCTCAGAGATTTATCACCAGAATTCAATGTTTGGACACAACATGGCGTTTGGCGGT 680
Query 769 GGTGGGTACGCTTTAAGCAGCTCATTGGCTAATGTTTTAGCTAGAAATTTCGATTCTTGT 828
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GGAGGGTTCGCTTTAAGCAGCTCATTGGCTAATGTTTTAGCTAGAAATTTCGATTCTTGT 740
Query 829 ATCGAACGATATCCACATTTGTACGGAGGAGACTCTAGGGTTTATGCTTGTGTGCTTGAG 888
|||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 741 ATCGAACGGTATCCACATTTGTACGGAGGAGACTCTAGGGTTCATGTTTGTGTGCTTGAG 800
Query 889 CTTGGGGTTGGATTGTCTAAAGAGCCTGGCTTCCATCAGTTTGATGTGAGAGGAAATGCA 948
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 801 CTCGGAGTTGGATTGTCTAAAGAACCTGGCTTCCATCAGTTTGATGTGAGAGGAAATGCA 860
Query 949 TTGGGAATATTGACATCACATTCAACGAGACCGTTGGTGTCACTACACCACATGGCTCAC 1008
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 861 TTGGGAATATTGACATCACATTCAATGAGACCGTTGGTGTCACTACACCACCTGGCTCAC 920
Query 1009 ATTGACCCAATCTTTCCAAACTCAACCACTTTCTCCGCGGTCCGCCACCTTTTCTCCGCC 1068
|||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct 921 ATTGACCCAATCTTTCCAAACTCAACCACTTTCTCCGCCGTCCACCACCTCTTCTCAGCC 980
Query 1069 GTACAACTCGACCCTCTCCGTATTTTTCAACTATCCGTTTGCTACGACCGTTGGTACTCT 1128
||| |||| |||||||||||||| ||||| || ||| |||||||||||||||||||||||
Sbjct 981 GTAGAACTTGACCCTCTCCGTATATTTCAGCTCTCCATTTGCTACGACCGTTGGTACTCT 1040
Query 1129 TGGACCATCTCCGTCTCTTGGGGATATACTGTTCAGATTGATGGCAGGCATTTGTTTCTA 1188
||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1041 TGGACTATCTCCGTCTCTTGGGGATATACTGTTCAGATTGATAGTAGGCATTTGTTTCTA 1100
Query 1189 CGGGATGTTTTGCGGGCACAAGAGACGTTCCGACCATGGCAAAAATCAGGCGGATTAGCA 1248
| ||||||||||||| ||||||||||||| | ||| |||||| | || |||||||| |||
Sbjct 1101 CCGGATGTTTTGCGGACACAAGAGACGTTTCAACCGTGGCAAGATTCCGGCGGATTGGCA 1160
Query 1249 AGTGTTTACACATTCAACACAAGAGAGATTCATCGTGATCCTTGCCAACGACCTGTCACT 1308
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1161 AGTGTTTACATGTTCAACACAAGAGAGATTCATCCTGATCCTTGCCAACGACCTGTCACT 1220
Query 1309 TTCTACATGCAACATGTTTCTTCTAGTAGCCATGATGGAACCATTAAAAGTGTTTATAAG 1368
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1221 TTCTACATGCAACATGTTTCTTATAGTAGCCATAATGGAACCATTAAAAGTGTTTATAAG 1280
Query 1369 CAAGCTTACGAGAATTGCACCTACGATCCTGTTACATCGCCTCGCAAAATTCAT-GAGAT 1427
|| ||||| |||||||| || |||||||| ||||||||||||||||||| || |||||
Sbjct 1281 CAGGCTTATGAGAATTGTACATACGATCCCATTACATCGCCTCGCAAAAT-CAAAGAGAT 1339
Query 1428 TAGAGTGTTTTCAAGAAGACTCGATCCCAATATCAGACAA 1467
|||||||||||||||||||||||||||||| |||| ||||
Sbjct 1340 TAGAGTGTTTTCAAGAAGACTCGATCCCAACATCAAACAA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5