BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05280.1 Length=1497 Score E Sequences producing significant alignments: (Bits) Value Ahg919223 jgi|Araly1|919223|scaffold_100504.1 1997 0.0 > Ahg919223 jgi|Araly1|919223|scaffold_100504.1 Length=1429 Score = 1997 bits (1081), Expect = 0.0 Identities = 1268/1360 (93%), Gaps = 5/1360 (0%) Strand=Plus/Plus Query 112 ATGTGTCTTCCATTTCGACCCGTCTCGAAAACATATT-AT--TCGTCTTCTTCTTCGACT 168 ||||||||||||||| |||||||||||||||| |||| | || ||||||||||||||| Sbjct 21 ATGTGTCTTCCATTTAGACCCGTCTCGAAAACCTATTCTTCCTCTTCTTCTTCTTCGACT 80 Query 169 ATCGTGACGCGTATGGTAAACTGCATACTACTTTTTGTATTCATTTTGTTGGTCTACCTC 228 |||| |||||||||| |||| ||||||||| |||||||||||||||| |||||||||||| Sbjct 81 ATCGCGACGCGTATGATAAATTGCATACTAATTTTTGTATTCATTTTCTTGGTCTACCTC 140 Query 229 CTCATCTCGGCCTCAAGACTTCAATCTAAAAACTCTATTCATGCATACTTCTCATCTTCT 288 ||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| Sbjct 141 CTCATCTCGGCCTCAAGGCTTCAATCTAAAGACTCTATTCATGCCTACTTCTCATCTTCT 200 Query 289 GATCAAGATCAATCTCAGAGCCCGACAAAAATCGAGCACATCGTCTTTGGGATAGGCTCA 348 ||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||| Sbjct 201 GATCAAGATCAATCTCAGATCCCAACAAAAATCGAGCACGTCGTATTTGGGATAGGCTCA 260 Query 349 AGCGCGATCTCGTGGCGTGCACGTAGAGAATACGTTAAGCTTTGGTGGGATGCTCAGAAA 408 ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 AGCACGAACTCGTGGGGTGCACGTAGAGAATACGTTAAGCTTTGGTGGGATGCTCAGAAA 320 Query 409 ATGAGAGGCTGCGTCTTTGTTGAGCGTCCCTTGCCGTCTTCTCAAAACCACACAGATTCA 468 |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 321 ATGAGAGGCTGCGTCTTTGTTGAGCGTCCCTTTCCGTCTTCGGAAAACCACACAGATTCA 380 Query 469 TATCTCCTTCCTCCGGTTTGTGTTTCCCAAGATACTTCCCGGTTCAGGTACACTTGGAGA 528 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 AATCTCCTTCCTCCGGTTTGTGTTTCCCAAGATACTTCCCGGTTCAGGTACACTTGGAGA 440 Query 529 GGCGGTGACAGAAACGCGATCCGAATCGCGCGGTGCGTTCTAGAAACTGTCAGGCTATTC 588 | |||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct 441 GACGGTGACAGAAACGCGATCCGAATAGCCCGGTGCGTTCTAGAAACCGTCAGACTATTC 500 Query 589 AACACCTCCTCAGAAGAAGTAAGATGGTACGTATTTGGAGACGACGACACGATTTTCATT 648 || ||||||||| |||||||||| |||||||||||||||||||||||||||||||| || Sbjct 501 AATACCTCCTCAAAAGAAGTAAGGTGGTACGTATTTGGAGACGACGACACGATTTTTATA 560 Query 649 CCTGAAAACCTCGCTCGAACTCTCTCCAAATACGACCACACATCATGGTATTACATAGGA 708 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 561 CCTGAAAATCTCGCTCGAACTCTCTCCAAATACGACCACACATCATGGTATTACATAGGA 620 Query 709 TCAACCTCGGAGATTTATCACCAGAACTCTATGTTCGGACACGACATGGCGTTCGGGGGT 768 |||||||| ||||||||||||||||| || ||||| |||||| |||||||||| || ||| Sbjct 621 TCAACCTCAGAGATTTATCACCAGAATTCAATGTTTGGACACAACATGGCGTTTGGCGGT 680 Query 769 GGTGGGTACGCTTTAAGCAGCTCATTGGCTAATGTTTTAGCTAGAAATTTCGATTCTTGT 828 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 681 GGAGGGTTCGCTTTAAGCAGCTCATTGGCTAATGTTTTAGCTAGAAATTTCGATTCTTGT 740 Query 829 ATCGAACGATATCCACATTTGTACGGAGGAGACTCTAGGGTTTATGCTTGTGTGCTTGAG 888 |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 741 ATCGAACGGTATCCACATTTGTACGGAGGAGACTCTAGGGTTCATGTTTGTGTGCTTGAG 800 Query 889 CTTGGGGTTGGATTGTCTAAAGAGCCTGGCTTCCATCAGTTTGATGTGAGAGGAAATGCA 948 || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 801 CTCGGAGTTGGATTGTCTAAAGAACCTGGCTTCCATCAGTTTGATGTGAGAGGAAATGCA 860 Query 949 TTGGGAATATTGACATCACATTCAACGAGACCGTTGGTGTCACTACACCACATGGCTCAC 1008 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 861 TTGGGAATATTGACATCACATTCAATGAGACCGTTGGTGTCACTACACCACCTGGCTCAC 920 Query 1009 ATTGACCCAATCTTTCCAAACTCAACCACTTTCTCCGCGGTCCGCCACCTTTTCTCCGCC 1068 |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| Sbjct 921 ATTGACCCAATCTTTCCAAACTCAACCACTTTCTCCGCCGTCCACCACCTCTTCTCAGCC 980 Query 1069 GTACAACTCGACCCTCTCCGTATTTTTCAACTATCCGTTTGCTACGACCGTTGGTACTCT 1128 ||| |||| |||||||||||||| ||||| || ||| ||||||||||||||||||||||| Sbjct 981 GTAGAACTTGACCCTCTCCGTATATTTCAGCTCTCCATTTGCTACGACCGTTGGTACTCT 1040 Query 1129 TGGACCATCTCCGTCTCTTGGGGATATACTGTTCAGATTGATGGCAGGCATTTGTTTCTA 1188 ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 1041 TGGACTATCTCCGTCTCTTGGGGATATACTGTTCAGATTGATAGTAGGCATTTGTTTCTA 1100 Query 1189 CGGGATGTTTTGCGGGCACAAGAGACGTTCCGACCATGGCAAAAATCAGGCGGATTAGCA 1248 | ||||||||||||| ||||||||||||| | ||| |||||| | || |||||||| ||| Sbjct 1101 CCGGATGTTTTGCGGACACAAGAGACGTTTCAACCGTGGCAAGATTCCGGCGGATTGGCA 1160 Query 1249 AGTGTTTACACATTCAACACAAGAGAGATTCATCGTGATCCTTGCCAACGACCTGTCACT 1308 |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1161 AGTGTTTACATGTTCAACACAAGAGAGATTCATCCTGATCCTTGCCAACGACCTGTCACT 1220 Query 1309 TTCTACATGCAACATGTTTCTTCTAGTAGCCATGATGGAACCATTAAAAGTGTTTATAAG 1368 |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 1221 TTCTACATGCAACATGTTTCTTATAGTAGCCATAATGGAACCATTAAAAGTGTTTATAAG 1280 Query 1369 CAAGCTTACGAGAATTGCACCTACGATCCTGTTACATCGCCTCGCAAAATTCAT-GAGAT 1427 || ||||| |||||||| || |||||||| ||||||||||||||||||| || ||||| Sbjct 1281 CAGGCTTATGAGAATTGTACATACGATCCCATTACATCGCCTCGCAAAAT-CAAAGAGAT 1339 Query 1428 TAGAGTGTTTTCAAGAAGACTCGATCCCAATATCAGACAA 1467 |||||||||||||||||||||||||||||| |||| |||| Sbjct 1340 TAGAGTGTTTTCAAGAAGACTCGATCCCAACATCAAACAA 1379 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56030750395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5