BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05290.1
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311616 jgi|Araly1|311616|fgenesh1_pm.C_scaffold_1000396 1435 0.0
> Ahg311616 jgi|Araly1|311616|fgenesh1_pm.C_scaffold_1000396
Length=1113
Score = 1435 bits (777), Expect = 0.0
Identities = 1001/1106 (91%), Gaps = 27/1106 (2%)
Strand=Plus/Plus
Query 17 ATGGGATCACCATTGTGCGAGCATTTGGCTAGGCTTTGTCTTCAATGTGATTTGAAGTTA 76
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGGATCACCATTGTGCGATCATTTGGCTAGGCTTTGTCTTCAATGTGATTGGAAGTTA 60
Query 77 CACTCTAAGAGTAGTGTAAACAATTACAACTATTCGCGGATTCCGTTGTGTAATAATTGC 136
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 61 CACTCTAAGAGTCCTGTAAACAATTACGATTATTCGCGGATTCCGTTGTGTAATAATTGC 120
Query 137 GTTTCGCAGACCGCTCTTGTAGAATCCCTTGAACAAGGGTTGTGCCTATGCCAATCATGC 196
||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 121 AATTCGCAGACCGCTGTTGTAGAATGCCTTGAACAAGGGTTGTGCCTATGCCAAACATGC 180
Query 197 TTTTCAAATCCC-AATGTAATCTCGCGTTTTCTTCTTCTTCTTAGAAACGATGCTAGTGA 255
|||||||| ||| |||||| |||| |||||| ||||||||| |||||| | |||||||
Sbjct 181 TTTTCAAA-CCCTAATGTATTCTCACGTTTTATTCTTCTTC---GAAACGGTTCTAGTGA 236
Query 256 TTATTCGGCATATAATTTTCCACTGGATCTTGATTCCTCTTCTTCGTCTTGTTCATCTTC 315
| |||| |||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 237 TAATTCAGCATATAATTGTCCACTGGATCTTGATTCCTCTTCTTCTTCTTCTTCATCTTC 296
Query 316 TTTTATCGATCGCAATTGGGAATTTTCCCTTGGTTCCTTACCTCTCAATAATGAGGACTC 375
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 297 TTTTATTGATCGCAATTGGGCATTTTCCCTTGGTTCCTTACCTCTCAATAATGAGGATTC 356
Query 376 ATCATCATCTTTTGAAATCCTTCAAATATTTGAAGATCATACAAAGAATTATAGTGATCA 435
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 ATCATCATCTTTTGAAATCCTTCAAATATTTGAAAATCATACAAAGAATTATAGTGATCA 416
Query 436 ACAAGTGTTGACGCTTCAGCCCGATTATTTGGACATAATTCCTAAGGATAGTTCATGCTC 495
||| ||| ||||||||||||| |||||||| || | |||||||||||||||||||||||
Sbjct 417 ACATGTGCTGACGCTTCAGCCAGATTATTT-GA-A-CATTCCTAAGGATAGTTCATGCTC 473
Query 496 AGGCTTCAAAAGCTACGAAACTAAAGAAGATATAGAGAATGTTTTGATGAACACTTTTGA 555
| |||||||| |||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 474 AAGCTTCAAAGGCTATGAAACTAAAGAAGATATAGAGAATGTTTTGCTCAACACTTTTGA 533
Query 556 TGGCGCCGAGGCAGCAGTATTAGACCTAAAACAATATAACCCCGAGGAAGATTTGATCCT 615
||||||||| | |||||||||||||||||| ||||||||| |||||||||||||||| |
Sbjct 534 TGGCGCCGA-G--GCAGTATTAGACCTAAAAGAATATAACCTCGAGGAAGATTTGATCGT 590
Query 616 CA-C--GGAGCTAATCGATGAATTAGC-AAGAGACAATTCAGAGACCACGCCGACCAATA 671
|| | | ||||||||||||||| | || | |||||||||||| |||||| |||||||
Sbjct 591 CACCAATCAACTAATCGATGAATTATCGAA-ACACAATTCAGAGATCACGCCTACCAATA 649
Query 672 CTT-TACCAA-CTTCAGCATCTGGTATG---TCATCGGATATACATAAAGATTACAACAC 726
|| || ||| ||||| |||| |||||| |||||| |||||| |||||||||| ||
Sbjct 650 -TTATA-CAATCTTCACCATCGGGTATGTCATCATCGCTTATACAAAAAGATTACAGCAT 707
Query 727 TGAAGCTTTGGCTAATGCAAGTTCTCAAGATTATTTTATAAACCAAATGATTGGCTCAAA 786
||||||||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 708 TGAAGCTTTGGCTAACGCAAGTTCTCAAGATCATTATATAAATCAAATGATTGGCTCAAA 767
Query 787 AGCAAAGGAAGAGACCAATGATCTTGCAATACTCCCTAACGCTCTTGTTCAACTTGACTG 846
||||||||||||||||||| ||||||| ||| |||||||| |||||| ||||||||||||
Sbjct 768 AGCAAAGGAAGAGACCAATAATCTTGCCATATTCCCTAACCCTCTTGCTCAACTTGACTG 827
Query 847 TGGACAATCGCAGTTGATACTTACCGATGAGATGTTACCATGGGAGAATCAAACATTTGT 906
||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 828 TGGACAAACGCAGTTGATTTTTACCGATGAGATGTTACCATGGCAGAATCAAACATTTGT 887
Query 907 ACCTGTTAAGGGATTTAGTCCGA-AAGATCGAGAAGAGGCCAAGAAAAGATATTTCGAAA 965
|||||| ||| ||| |||||| | |||||||||||||||| ||||| |||||||||||||
Sbjct 888 ACCTGTCAAGAGATCTAGTCC-ACAAGATCGAGAAGAGGCGAAGAAGAGATATTTCGAAA 946
Query 966 AGAAGAAGAAACGCAAGTTTGGGAAACAAATTAGATATGAATCTCGAAAATCTACAGCAG 1025
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 947 AAAAGAAGAAACGCAAGTTTGGGAAGCAAATTAGATATGAATCTCGAAAATCTACAGCTG 1006
Query 1026 ATACGAAGAAAAGAATGAAAGGAAGATTTACAAAAGCTGGTGCTGATTATGACTATGACC 1085
||||||||| |||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1007 ATACGAAGAGAAGAATGAAAGGAAGATTTACAAAAGCTGGTGCTGAGTACGATTATGACC 1066
Query 1086 CACGAGCT-AATGATATTAACAAAGG 1110
|||||||| || ||||| |||||||
Sbjct 1067 CACGAGCTGAAA-ATATTGACAAAGG 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41973331617
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5