BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05291.1
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311617 jgi|Araly1|311617|fgenesh1_pm.C_scaffold_1000397 702 0.0
> Ahg311617 jgi|Araly1|311617|fgenesh1_pm.C_scaffold_1000397
Length=567
Score = 702 bits (380), Expect = 0.0
Identities = 495/548 (90%), Gaps = 18/548 (3%)
Strand=Plus/Plus
Query 110 ATGGAAGAGGGGAA-AGGAACGGAGAAGAAAGGATGCATAATTACCGTCATCATTGTTTG 168
|||||||||||||| | ||||||||||||||||||| |||| | |||||||||||||||
Sbjct 1 ATGGAAGAGGGGAACA-AAACGGAGAAGAAAGGATGCTTAATCAGCGTCATCATTGTTTG 59
Query 169 CATTGTTTTGACTGTAGGCTTAGATATCGTCGCTGGTTTCGTCGGATTACAAGCCCAAGC 228
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 60 CATTGTTTTGACTGTAGGCTTTGATATCGTCGCTGGTTTCGTCGGATTACAAGCCGAAGC 119
Query 229 CGCCCAACAATATGTGAAGCACGATAAGCTCGAGTGTAAAGCTCCAAGCAAAACAGCTTT 288
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 120 CGCCCAACAAGATGTGAAGCACAATAAGCTCGAGTGTCAAGCTCCAAGCAAAACAGCTTT 179
Query 289 CGTGTTAGGGATAATTGCAGTGTCATGTTTGGCAACAGCTCATGTCAGTGCCAATGTGAT 348
||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 180 CGTGTTAGGGATAATCGCAGTGTCATGTTTGGCAGCAGCTCATCTCAGTGCCAATGTGAT 239
Query 349 CGGATGCTCTATCTCCAATCTATTCCAAGCACTCGGCGCCTTACCTAAGAATAAGATCAC 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGGATGCTCTATCTCCAATCTATTCCAAGCACTCGGCGCCTTACCTAAGAATAAGATCAC 299
Query 409 TACATACTTCAACATGGCATGCCTTTTTC-TCATTTGGGTCGTAGGAATCTTTGGAGCAT 467
|||||||||||||||| ||||||||| | ||| |||| |||||||||| |||||||
Sbjct 300 TACATACTTCAACATGACATGCCTTTG-CATCAATTGGATCGTAGGAATAGCGGGAGCAT 358
Query 468 TGATCCTTGCGAATGGG-ATATGGTCGAACACAGAGTCAAGAATAAGA-TGTAG-ATTCA 524
||||||||||| |||| ||||||||||||| ||| |||||| | ||| ||| | |||||
Sbjct 359 TGATCCTTGCGG-TGGGGATATGGTCGAACAGAGAATCAAGA-TCAGAATGT-GTATTCA 415
Query 525 CAAACAA---CCATGTGTTCTCTATTGGAGGCAAAGTGTGTTTCCTTCATGCCATTGTTT 581
||||||| ||||||||| ||||| || || |||||||||||||||||||||||||| |
Sbjct 416 CAAACAAAGTCCATGTGTTTTCTATCGGGGGTAAAGTGTGTTTCCTTCATGCCATTGTCT 475
Query 582 CTGGCATATATTACATATCGTCTATTGTAGCAAGG-GCTCGG-CATTTTCACCGAACCAA 639
||| |||||||||| |||||||||| ||||| ||| | | || |||||| |||||||| |
Sbjct 476 CTGTCATATATTACGTATCGTCTATAGTAGCTAGGTG-T-GGTCATTTTAACCGAACCGA 533
Query 640 ACC-AAAC 646
||| ||||
Sbjct 534 ACCGAAAC 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26647918983
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5