BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05291.1 Length=724 Score E Sequences producing significant alignments: (Bits) Value Ahg311617 jgi|Araly1|311617|fgenesh1_pm.C_scaffold_1000397 702 0.0 > Ahg311617 jgi|Araly1|311617|fgenesh1_pm.C_scaffold_1000397 Length=567 Score = 702 bits (380), Expect = 0.0 Identities = 495/548 (90%), Gaps = 18/548 (3%) Strand=Plus/Plus Query 110 ATGGAAGAGGGGAA-AGGAACGGAGAAGAAAGGATGCATAATTACCGTCATCATTGTTTG 168 |||||||||||||| | ||||||||||||||||||| |||| | ||||||||||||||| Sbjct 1 ATGGAAGAGGGGAACA-AAACGGAGAAGAAAGGATGCTTAATCAGCGTCATCATTGTTTG 59 Query 169 CATTGTTTTGACTGTAGGCTTAGATATCGTCGCTGGTTTCGTCGGATTACAAGCCCAAGC 228 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 60 CATTGTTTTGACTGTAGGCTTTGATATCGTCGCTGGTTTCGTCGGATTACAAGCCGAAGC 119 Query 229 CGCCCAACAATATGTGAAGCACGATAAGCTCGAGTGTAAAGCTCCAAGCAAAACAGCTTT 288 |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 120 CGCCCAACAAGATGTGAAGCACAATAAGCTCGAGTGTCAAGCTCCAAGCAAAACAGCTTT 179 Query 289 CGTGTTAGGGATAATTGCAGTGTCATGTTTGGCAACAGCTCATGTCAGTGCCAATGTGAT 348 ||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| Sbjct 180 CGTGTTAGGGATAATCGCAGTGTCATGTTTGGCAGCAGCTCATCTCAGTGCCAATGTGAT 239 Query 349 CGGATGCTCTATCTCCAATCTATTCCAAGCACTCGGCGCCTTACCTAAGAATAAGATCAC 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CGGATGCTCTATCTCCAATCTATTCCAAGCACTCGGCGCCTTACCTAAGAATAAGATCAC 299 Query 409 TACATACTTCAACATGGCATGCCTTTTTC-TCATTTGGGTCGTAGGAATCTTTGGAGCAT 467 |||||||||||||||| ||||||||| | ||| |||| |||||||||| ||||||| Sbjct 300 TACATACTTCAACATGACATGCCTTTG-CATCAATTGGATCGTAGGAATAGCGGGAGCAT 358 Query 468 TGATCCTTGCGAATGGG-ATATGGTCGAACACAGAGTCAAGAATAAGA-TGTAG-ATTCA 524 ||||||||||| |||| ||||||||||||| ||| |||||| | ||| ||| | ||||| Sbjct 359 TGATCCTTGCGG-TGGGGATATGGTCGAACAGAGAATCAAGA-TCAGAATGT-GTATTCA 415 Query 525 CAAACAA---CCATGTGTTCTCTATTGGAGGCAAAGTGTGTTTCCTTCATGCCATTGTTT 581 ||||||| ||||||||| ||||| || || |||||||||||||||||||||||||| | Sbjct 416 CAAACAAAGTCCATGTGTTTTCTATCGGGGGTAAAGTGTGTTTCCTTCATGCCATTGTCT 475 Query 582 CTGGCATATATTACATATCGTCTATTGTAGCAAGG-GCTCGG-CATTTTCACCGAACCAA 639 ||| |||||||||| |||||||||| ||||| ||| | | || |||||| |||||||| | Sbjct 476 CTGTCATATATTACGTATCGTCTATAGTAGCTAGGTG-T-GGTCATTTTAACCGAACCGA 533 Query 640 ACC-AAAC 646 ||| |||| Sbjct 534 ACCGAAAC 541 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26647918983 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5