BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05300.1
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470527 jgi|Araly1|470527|fgenesh2_kg.1__481__AT1G05300.1 1694 0.0
> Ahg470527 jgi|Araly1|470527|fgenesh2_kg.1__481__AT1G05300.1
Length=1138
Score = 1694 bits (917), Expect = 0.0
Identities = 1039/1097 (95%), Gaps = 11/1097 (1%)
Strand=Plus/Plus
Query 130 TAATCGATAAGATGAGAATCACACAAAACGTCAAGctcttactcttcttcttcttcttca 189
||||| |||||||||||||||||||||||| ||||||||| || |||| ||||||||||
Sbjct 36 TAATCAATAAGATGAGAATCACACAAAACGGCAAGCTCTT--TC-TCTTTTTCTTCTTCA 92
Query 190 tctccttcctcttcATCGCCGTATCCGCCGGCGAGTCTAAATGCGAGTGTTCACACGAAG 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 TCTCCTTCCTCTTCATCGCCGTATCCGCCGGCGAGTCTAAATGCGAGTGTTCACACGAAG 152
Query 250 ACGACGAGGCAAACAAAGCCGGAGCaaaaaaaTACAAGATCGCCGCAATTCCTTCCGTTC 309
||||||| || |||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 153 ACGACGAAGCGAACAAAGCCGGAGCTAATAAATACAAGATCGCCGCAATACCTTCCGTTC 212
Query 310 TGGCCGCCGGAGTTATCGGCGTTATGTTTCCGTTACTAGGCAAGTTCTTCCCGTCGCTTA 369
| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 213 TCACCGCCGGAGTTATAGGCGTTCTGTTTCCGTTACTAGGCAAGTTCTTCCCGTCGCTTA 272
Query 370 AACCGGAGACGACTTTCTTCTTCGTGACGAAAGCCTTCGCCGCCGGCGTAATCCTCGCAA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 273 AACCGGAGACGACTTTCTTCTTCGTGACGAAAGCCTTCGCCGCCGGCGTAATCCTAGCAA 332
Query 430 CGGGGTTTATGCATGTGTTGCCTGAAGGTTACGAGAAGCTGACGTCACCGTGTCTGAAAG 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CGGGGTTTATGCATGTGTTGCCTGAAGGTTACGAGAAGCTGACGTCACCGTGTCTGAAAG 392
Query 490 GAGAAGCCTGGGAGTTTCCGTTCACAGGCTTTATCGCGATGGTCGCTGCGATTTTGACTC 549
||||||||||||||||||||||||| || ||| | || ||||||||||||||||||||||
Sbjct 393 GAGAAGCCTGGGAGTTTCCGTTCACTGGGTTTGTTGCAATGGTCGCTGCGATTTTGACTC 452
Query 550 TTTCCGTTGACTCTTTTGCCACGTCGTATTTCCATAAAGC-GCATTTTAAAACGTCTAAG 608
| ||||||||||| |||||||||||||||||||||| | | |||||| || |||||||||
Sbjct 453 TCTCCGTTGACTCGTTTGCCACGTCGTATTTCCATAGA-CTGCATTTCAAGACGTCTAAG 511
Query 609 AGGATTGGTGACGGTGAGGAACAAGACGCTGGCGGTGGCGGTGGCGGTGGAGACGAGCTC 668
|||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 512 AGGATTGGTGACGGTGAGGAAC-A-A----GGCGGTGGCGGTGGCGGTGGAGACGAGCTC 565
Query 669 GGGTTGCACGTGCATGCTCACGGTCACACGCACGGGATTGTTGGCGTGGAATCTGGTGAA 728
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GGTTTGCACTTGCATGCTCACGGTCACACGCACGGGATTGTTGGCGTGGAATCTGGTGAA 625
Query 729 TCCCAGGTTCAGCTTCACCGGACTCGAGTTGTTGCACAGGTGTTGGAAGTGGGAATAATA 788
||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 626 TCCGAAGTTCAGCTTCACCGGACTCGAGTTGTGGCACAGGTGTTGGAAGTGGGAATAATA 685
Query 789 GTACATTCAGTGGTAATAGGAATATCACTGGGAGCATCACAAAGTCCAGACACTGCCAAA 848
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GTACACTCAGTGGTAATAGGAATATCACTGGGAGCATCACAAAGTCCAGACACTGCCAAA 745
Query 849 GCTCTCTTTGCTGCTTTAATGTTTCATCAATGCTTCGAGGGTCTTGGTCTTGGTGGTTGC 908
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 746 GCTCTCTTTGCTGCTTTAATGTTTCATCAATGCTTCGAAGGACTTGGTCTTGGTGGTTGC 805
Query 909 ATCGCCCAGGGAAATTTCAATTGTATGTCAATTACAATAATGTCGATCTTTTTCTCTGTA 968
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 806 ATCGCCCAGGGAAATTTCAATTTTATGTCAATTACAATAATGTCGATCTTTTTCTCTGTA 865
Query 969 ACGACGCCGGTAGGAATCGCGGTTGGAATGGCAATTTCAAGCTCTTATGATGATTCGAGT 1028
||||||||||| ||||||||||| |||||||||||||||||||||||| | || ||||||
Sbjct 866 ACGACGCCGGTCGGAATCGCGGTCGGAATGGCAATTTCAAGCTCTTATAACGAGTCGAGT 925
Query 1029 CCAACGGCTCTGATCGTACAGGGAGTCCTTAACGCTGCATCTGCAGGCATCCTCATCTAT 1088
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 926 CCAACGGCTCTGATCGTCCAAGGAGTCCTTAATGCTGCATCTGCAGGCATCCTCATCTAT 985
Query 1089 ATGTCTCTAGTGGACTTTCTCGCAGCAGATTTTATGCACCCTAAGATGCAGTCTAACACT 1148
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 986 ATGTCTCTAGTAGACTTTCTCGCAGCAGATTTTATGCACCCTAAGATGCAAAAAAACACT 1045
Query 1149 AGACTTCAAATCATGGCTCATATCTCTCTTCTTGTTGGAGCAGGGGTTATGTCACTTTTA 1208
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1046 AGACTTCAAATCATGGCCCATATCTCTCTTCTTGTTGGAGCAGGGATTATGTCACTTTTA 1105
Query 1209 GCTAAATGGGCTTAAAT 1225
|||||||||||||||||
Sbjct 1106 GCTAAATGGGCTTAAAT 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5