BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05310.1 Length=1337 Score E Sequences producing significant alignments: (Bits) Value Ahg910212 jgi|Araly1|910212|Al_scaffold_0001_466 1677 0.0 > Ahg910212 jgi|Araly1|910212|Al_scaffold_0001_466 Length=1212 Score = 1677 bits (908), Expect = 0.0 Identities = 1030/1090 (94%), Gaps = 3/1090 (0%) Strand=Plus/Plus Query 176 TGGTATCAAAGCAATATCATATTCATTCAAGAAATCCTTATGTGatcaccatcaccatca 235 |||||||||| |||||||||||||| |||| |||||||| | || ||||||||| ||||| Sbjct 126 TGGTATCAAATCAATATCATATTCAGTCAAAAAATCCTTTTATGGTCACCATCATCATCA 185 Query 236 tcatcatcatcatcatcaCCACCACCGGCATAAACCTTCGGATACCAAAAGAAAGGTATC 295 ||||||| |||||||||| ||||| |||| ||||||||||||||||| ||||||||| Sbjct 186 TCATCATAATCATCATCATCACCA---TCATAGACCTTCGGATACCAAAAAAAAGGTATC 242 Query 296 AATATGCGACGATTTCCCTAAAAATATACCTCCATTGGACACCGACACAACATCCTATCT 355 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 243 AATATGCGACGATTTCCCTAAAAATATACCTCCATTGGACACCGACACAACGTCCTATCT 302 Query 356 CTGCGTGGATAAGAACGGTTGCTGCAATTTCACGACGGTGCAATCGGCCGTGGACGCAGT 415 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 303 CTGCGTGGATAAGAACGGTTGCTGCAATTTCACGACGGTGCAATCTGCCGTGGACGCAGT 362 Query 416 GGGGAATTTCAGTCAAAGAAGGAACGTGATTTGGATAAACTCCGGCATGTACTATGAAAA 475 ||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||| Sbjct 363 GGGGAATTTTAGTCAGAGAAGGAACGTGATTTGGATCAATTCCGGCATGTACTATGAAAA 422 Query 476 AGTGGTGATTCCGAAGACTAAACCAAACATAACGTTGCAAGGACAAGGCTTCGACATTAC 535 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| Sbjct 423 AGTGGTGATTCCGAAGACTAAACCAAACATAACGTTGCAAGGACAAGGGTTCGAGACTAC 482 Query 536 AGCCATTGCGTGGAACGACACTGCCTACTCAGCTAATGGCACATTTTATTGTGCCACGGT 595 ||||| || ||||||||||| |||||||||||||||||||||||||| |||||| |||| Sbjct 483 GGCCATAGCATGGAACGACACGGCCTACTCAGCTAATGGCACATTTTACTGTGCCTCGGT 542 Query 596 CCAAGTCTTTGGTTCTCAGTTCGTCGCTAAGAACATCAGTTTCATGAACGTGGCACCGAT 655 ||||||||| |||||||||||||| || |||||||| ||||||||||||||||| ||||| Sbjct 543 CCAAGTCTTCGGTTCTCAGTTCGTTGCGAAGAACATTAGTTTCATGAACGTGGCTCCGAT 602 Query 656 ACCAAAGCCAGGAGACGTAGGAGCTCAGGCGGTGGCAATAAGAATCGCCGGAGATGAATC 715 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 603 ACCAAAGCCAGGAGACGTAGGAGCTCAGGCGGTGGCGATAAGAATTGCCGGAGATGAATC 662 Query 716 AGCGTTTGTGGGATGCGGTTTCTTCGGAGCACAAGACACTCTTCATGACGATAGAGGTCG 775 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 663 AGCGTTTGTAGGATGCGGTTTCTTCGGAGCTCAAGACACTCTTCATGACGATAGAGGTCG 722 Query 776 TCATTACTTCAAGGATTGTTACATTCAAGGATCCATTGATTTCATCTTCGGCAACGCTAA 835 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 723 TCATTACTTCAAAGATTGTTACATTCAAGGCTCCATTGATTTCATCTTCGGCAACGCTAA 782 Query 836 GTCTCTCTATCAGGACTGTCGAATAATATCAATGGCTAATCAATTGAGCCCAGGTTCAAA 895 |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 783 ATCTCTCTATCAGGACTGTCGAATAATATCAATGGCTAATCAAGTGAGCCCAGGGTCAAA 842 Query 896 AGCAGTTAACGGAGCCGTGACTGCAAATGGGCGTAGCTCCAAGGACGAGAACAGTGGCTT 955 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 843 AGCGGTTAACGGAGCCGTGACTGCAAACGGGCGTAGCTCCAAGGACGAGAATAGTGGCTT 902 Query 956 CTCCTTCGTCAACTGCACAATCGGTGGAACTGGTCACGTGTGGCTAGGTCGTGCATGGCG 1015 ||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| Sbjct 903 CTCCTTCGTCAACTGCACAATCGGTGGCACCGGTCACGTGTGGCTCGGTCGTGCATGGCG 962 Query 1016 GCCTTACTCACGTGTGGTTTTCGTTTCCACTACTATGACCGATGTTATCGCACCCGAAGG 1075 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 963 GCCTTACTCACGTGTGGTCTTCGTTTCCACTACCATGACCGATGTTATCGCACCCGAAGG 1022 Query 1076 CTGGAACAACTTCAACGATCCCTCTAGGGACGCGACTATATTTTATGGAGAGTATAATTG 1135 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 CTGGAACAATTTCAACGATCCCTCTAGGGACGCGACTATATTTTATGGAGAGTATAATTG 1082 Query 1136 TTCGGGTCCAGGAGCAGATATGTCAAAGAGAGCACCATATGTTCAAAAACTTAATGAGAC 1195 ||||||||||||||| |||||||||||||| ||| ||||||| || || ||||||||||| Sbjct 1083 TTCGGGTCCAGGAGCCGATATGTCAAAGAGGGCAGCATATGTGCAGAAGCTTAATGAGAC 1142 Query 1196 TCAAGTTGCTCTATTAATTAACACGTCTTTTATTGATGGAGATCAATGGTTACAGTTTTC 1255 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1143 TCAAGTTGCTCTATTAATTAACACGTCTTATATTGATGGAGATCAATGGTTACAGTTTTC 1202 Query 1256 TGACCTTTAA 1265 |||||||||| Sbjct 1203 TGACCTTTAA 1212 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50017267104 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5