BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05310.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910212 jgi|Araly1|910212|Al_scaffold_0001_466 1677 0.0
> Ahg910212 jgi|Araly1|910212|Al_scaffold_0001_466
Length=1212
Score = 1677 bits (908), Expect = 0.0
Identities = 1030/1090 (94%), Gaps = 3/1090 (0%)
Strand=Plus/Plus
Query 176 TGGTATCAAAGCAATATCATATTCATTCAAGAAATCCTTATGTGatcaccatcaccatca 235
|||||||||| |||||||||||||| |||| |||||||| | || ||||||||| |||||
Sbjct 126 TGGTATCAAATCAATATCATATTCAGTCAAAAAATCCTTTTATGGTCACCATCATCATCA 185
Query 236 tcatcatcatcatcatcaCCACCACCGGCATAAACCTTCGGATACCAAAAGAAAGGTATC 295
||||||| |||||||||| ||||| |||| ||||||||||||||||| |||||||||
Sbjct 186 TCATCATAATCATCATCATCACCA---TCATAGACCTTCGGATACCAAAAAAAAGGTATC 242
Query 296 AATATGCGACGATTTCCCTAAAAATATACCTCCATTGGACACCGACACAACATCCTATCT 355
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 243 AATATGCGACGATTTCCCTAAAAATATACCTCCATTGGACACCGACACAACGTCCTATCT 302
Query 356 CTGCGTGGATAAGAACGGTTGCTGCAATTTCACGACGGTGCAATCGGCCGTGGACGCAGT 415
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 303 CTGCGTGGATAAGAACGGTTGCTGCAATTTCACGACGGTGCAATCTGCCGTGGACGCAGT 362
Query 416 GGGGAATTTCAGTCAAAGAAGGAACGTGATTTGGATAAACTCCGGCATGTACTATGAAAA 475
||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 363 GGGGAATTTTAGTCAGAGAAGGAACGTGATTTGGATCAATTCCGGCATGTACTATGAAAA 422
Query 476 AGTGGTGATTCCGAAGACTAAACCAAACATAACGTTGCAAGGACAAGGCTTCGACATTAC 535
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 423 AGTGGTGATTCCGAAGACTAAACCAAACATAACGTTGCAAGGACAAGGGTTCGAGACTAC 482
Query 536 AGCCATTGCGTGGAACGACACTGCCTACTCAGCTAATGGCACATTTTATTGTGCCACGGT 595
||||| || ||||||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 483 GGCCATAGCATGGAACGACACGGCCTACTCAGCTAATGGCACATTTTACTGTGCCTCGGT 542
Query 596 CCAAGTCTTTGGTTCTCAGTTCGTCGCTAAGAACATCAGTTTCATGAACGTGGCACCGAT 655
||||||||| |||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 543 CCAAGTCTTCGGTTCTCAGTTCGTTGCGAAGAACATTAGTTTCATGAACGTGGCTCCGAT 602
Query 656 ACCAAAGCCAGGAGACGTAGGAGCTCAGGCGGTGGCAATAAGAATCGCCGGAGATGAATC 715
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 603 ACCAAAGCCAGGAGACGTAGGAGCTCAGGCGGTGGCGATAAGAATTGCCGGAGATGAATC 662
Query 716 AGCGTTTGTGGGATGCGGTTTCTTCGGAGCACAAGACACTCTTCATGACGATAGAGGTCG 775
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 663 AGCGTTTGTAGGATGCGGTTTCTTCGGAGCTCAAGACACTCTTCATGACGATAGAGGTCG 722
Query 776 TCATTACTTCAAGGATTGTTACATTCAAGGATCCATTGATTTCATCTTCGGCAACGCTAA 835
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 723 TCATTACTTCAAAGATTGTTACATTCAAGGCTCCATTGATTTCATCTTCGGCAACGCTAA 782
Query 836 GTCTCTCTATCAGGACTGTCGAATAATATCAATGGCTAATCAATTGAGCCCAGGTTCAAA 895
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 783 ATCTCTCTATCAGGACTGTCGAATAATATCAATGGCTAATCAAGTGAGCCCAGGGTCAAA 842
Query 896 AGCAGTTAACGGAGCCGTGACTGCAAATGGGCGTAGCTCCAAGGACGAGAACAGTGGCTT 955
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 843 AGCGGTTAACGGAGCCGTGACTGCAAACGGGCGTAGCTCCAAGGACGAGAATAGTGGCTT 902
Query 956 CTCCTTCGTCAACTGCACAATCGGTGGAACTGGTCACGTGTGGCTAGGTCGTGCATGGCG 1015
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 903 CTCCTTCGTCAACTGCACAATCGGTGGCACCGGTCACGTGTGGCTCGGTCGTGCATGGCG 962
Query 1016 GCCTTACTCACGTGTGGTTTTCGTTTCCACTACTATGACCGATGTTATCGCACCCGAAGG 1075
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 963 GCCTTACTCACGTGTGGTCTTCGTTTCCACTACCATGACCGATGTTATCGCACCCGAAGG 1022
Query 1076 CTGGAACAACTTCAACGATCCCTCTAGGGACGCGACTATATTTTATGGAGAGTATAATTG 1135
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CTGGAACAATTTCAACGATCCCTCTAGGGACGCGACTATATTTTATGGAGAGTATAATTG 1082
Query 1136 TTCGGGTCCAGGAGCAGATATGTCAAAGAGAGCACCATATGTTCAAAAACTTAATGAGAC 1195
||||||||||||||| |||||||||||||| ||| ||||||| || || |||||||||||
Sbjct 1083 TTCGGGTCCAGGAGCCGATATGTCAAAGAGGGCAGCATATGTGCAGAAGCTTAATGAGAC 1142
Query 1196 TCAAGTTGCTCTATTAATTAACACGTCTTTTATTGATGGAGATCAATGGTTACAGTTTTC 1255
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1143 TCAAGTTGCTCTATTAATTAACACGTCTTATATTGATGGAGATCAATGGTTACAGTTTTC 1202
Query 1256 TGACCTTTAA 1265
||||||||||
Sbjct 1203 TGACCTTTAA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5