BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G05330.1

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919230 jgi|Araly1|919230|scaffold_100511.1                        566    5e-161


> Ahg919230 jgi|Araly1|919230|scaffold_100511.1
Length=445

 Score =  566 bits (306),  Expect = 5e-161
 Identities = 372/404 (92%), Gaps = 3/404 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTGATCACAACAACACTCCTCCCTTTGACCTAACGAAACTCGACCATTACATCAAA  60
            |||||||||  | | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  21   ATGGCTGAT--C-ATAACACTCCTCCCTATGACCTAACGAAACTCGACCATTACATCAAA  77

Query  61   TACCAACCACGAGAAGAAGCTGAAGAtttttttGTTCATGTCGAGGTCAAGGTTCTCGGA  120
            |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  78   TACCAACCACCAGAAGAAGCTGAAGATTTTTTTGTCCATGTCGAGGTCAAGGTTCTCGGA  137

Query  121  AAAGGATCTTCTCCGTTAGAGATCTCCTTCTCAACTTCGGTCTATGAATTCGTCTGGGAA  180
            |||||||||||||| |||||||||| ||| ||||| |||||| |||| ||| ||||||||
Sbjct  138  AAAGGATCTTCTCCATTAGAGATCTTCTTATCAACCTCGGTCCATGATTTCATCTGGGAA  197

Query  181  GACGAAGATTGTTATGAGTTAGTTGAACTCTACGAATTCTTTACCGAGGATGCTGGAATA  240
            ||||||||||||||||||  ||  ||||||||||||||||||  ||||||||||||||||
Sbjct  198  GACGAAGATTGTTATGAGAAAGCAGAACTCTACGAATTCTTTGTCGAGGATGCTGGAATA  257

Query  241  GATGCATTCGAGGCTCAGTTCTTGGTCAATGACTTGATTTTGTACGTTAATAAGACGACA  300
            ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  258  GATTCATACGAGGCTCAGTTCTTGGTCAATGACTTGATTTTGTACGTTAATAAGGTGACA  317

Query  301  CGACCGCTTGATGAGGACTTCACTGGAGTTTTCAAGTTGATGGCCGAAGTTACGTTAAAA  360
            ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct  318  CGACCGCTTGACGAGGACTTCACAGGAGTTTTCAAGTTGATGGCCGAAGTTACGGTAAAA  377

Query  361  CCGGTCCAGCTTAACCATGCCGGTTCACAGAAAACCGAATCCCA  404
            |||||| | |||||||||||||||||| |  |||||||||||||
Sbjct  378  CCGGTCGACCTTAACCATGCCGGTTCAGATCAAACCGAATCCCA  421



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14880679710


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5