BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05340.1
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470534 jgi|Araly1|470534|fgenesh2_kg.1__488__AT1G05340.1 824 0.0
Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1 113 1e-24
> Ahg470534 jgi|Araly1|470534|fgenesh2_kg.1__488__AT1G05340.1
Length=679
Score = 824 bits (446), Expect = 0.0
Identities = 623/702 (89%), Gaps = 38/702 (5%)
Strand=Plus/Plus
Query 7 TTACTATATTAtttttttGGAATTTATTCTGGT---G--A-CATTAATGTTCTATCCTCC 60
|||||||||||||| |||||||||||||||||| | | |||||||||||||||||||
Sbjct 1 TTACTATATTATTTGTTTGGAATTTATTCTGGTGACGTAACCATTAATGTTCTATCCTCC 60
Query 61 ACGCGGTTCTCATAAACCGA-CT--TGGCTTC-TTTATTTTTCCTT--TATCTTTCTCTA 114
|||||||||||||||||||| || | |||| ||||||||||||| | ||| ||||||
Sbjct 61 ACGCGGTTCTCATAAACCGACCTACTACCTTCTTTTATTTTTCCTTGATGTCTCTCTCTA 120
Query 115 TATATTTACACACACACGCATTTGTGCAGAGATATTCAAAGATTAGAAACATTCTTGATA 174
|||||||||| |||||||||||||| || | |||||||||||||| |||||||||||||
Sbjct 121 TATATTTACATACACACGCATTTGTACATAAATATTCAAAGATTA-AAACATTCTTGATC 179
Query 175 GATACAAAA-AACATTTTTCAGACACAA-AATCATAAAATCTTTGCCTTTAGTAGATCAA 232
||| ||||| | ||||||||||| || | |||||||||||||||| | |||||| |
Sbjct 180 GATTCAAAACATTGTTTTTCAGACA-AATATTCATAAAATCTTTGCC--T--TAGATCGA 234
Query 233 AGTTCTTTACATTAATCGTTAGAAGATGAGCCAGTACGATCACAACCAGTCTGCAGGAGC 292
||||||||||| |||||| | |||||||| ||||||||||||||||| ||||| |||||
Sbjct 235 AGTTCTTTACACTAATCGCTCCAAGATGAGTCAGTACGATCACAACCAATCTGCGGGAGC 294
Query 293 TAACCCACCGCCACCGATGTCTACCTGTACATCACCACCACCGCCGATTGGTTACCCGAC 352
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 295 TAACCCACCGCCACCGATGTCTACCGGTCCATCACCACCACCGCCGATTGGTTACCCGAC 354
Query 353 TAACCAACCGAGTCATGGTTCGGTAGCTCAGGGTAAAGTGGAAACCAAGTCTAAGGGTGA 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 355 GAACCAACCGAGTCATGGTTCGGTAGCTCAGGGTAAAGTGGAAACCAAGTCTAAGGGCGA 414
Query 413 CGGATTCTTCAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGCCCTGGACATTTGCTT 472
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 415 CGGATTCTTTAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGCCCTGGACATCTGCTT 474
Query 473 CTAAGCCATTTGGGAATTGGGATGGTCTATTTATGACGAGTTTATGTGAATGTGATGTGA 532
|||||| |||||| ||| || | | |||||||||||||| ||||||||||||||||||
Sbjct 475 CTAAGCTATTTGG-AAT-GG--T--T-TATTTATGACGAGTGTATGTGAATGTGATGTGA 527
Query 533 attattattattctctccagccttattgtataaattctctatttttt-gtttattatttt 591
|||||| | ||||||||||||||||||||||||||||| |||||||| |||||| | |||
Sbjct 528 ATTATT-T-ATTCTCTCCAGCCTTATTGTATAAATTCTATATTTTTTTGTTTATAAGTTT 585
Query 592 ctTGTAATACTTTGTGAGACGAACATATTATGGTTTGTATTTGGATCTCTACTCTCTAGT 651
|||||||||||| | || |||||||||||||||||||||||||| | || || |||
Sbjct 586 CTTGTAATACTTGG-GATTCGAACATATTATGGTTTGTATTTGGA-C-CT-CT----AGT 637
Query 652 ACTTAAATTAATTTGTCTTGCTCTTGGATTGGTATAGTTAAT 693
| ||||||| |||||||||||||||||||| ||||| |||||
Sbjct 638 ATTTAAATTCATTTGTCTTGCTCTTGGATTTGTATAATTAAT 679
> Ahg482146 jgi|Araly1|482146|fgenesh2_kg.4__1206__AT2G32190.1
Length=453
Score = 113 bits (61), Expect = 1e-24
Identities = 183/239 (77%), Gaps = 20/239 (8%)
Strand=Plus/Plus
Query 245 TAAT-CGTTAGAAGATGAGCCAGTACGA-TCACAACCAGTCTGCAGGAGC-TAACCCACC 301
|||| |||| |||||||||||| | | | || ||||| ||| ||||||| || || | |
Sbjct 49 TAATCCGTTCGAAGATGAGCCAATTC-AGCCAAAACCAATCTTCAGGAGCTTATCCTA-C 106
Query 302 GCCACCGA-TGTCTACCTGTACATCAC----CACCACCGCCGATTGGTTACCCGACTAAC 356
||| || | |||||||| | | | || ||||||| ||| | ||||||||||| ||
Sbjct 107 GCCGCC-AGTGTCTACC-GGCCCTTACGTGGCACCACCACCGCTCGGTTACCCGACGAAT 164
Query 357 CA-ACCGAGTCATGGTTCGGTAGCTCAGGGTAAAGTGGAAACCAAGTCTAAGGGTGACGG 415
| ||| ||||||| |||| |||| | ||||| || || || |||||||| ||
Sbjct 165 GACACC-AGTCATGCCCCGGTGGCTC--CG----GTGGAGACAAAATCCAAGGGTGATGG 217
Query 416 ATTCTTCAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGCCCTGGACATTTGCTTCT 474
|||||| |||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 218 ATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCT 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26152321062
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5