BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05350.1 Length=1627 Score E Sequences producing significant alignments: (Bits) Value Ahg470535 jgi|Araly1|470535|fgenesh2_kg.1__489__AT1G05350.1 1221 0.0 > Ahg470535 jgi|Araly1|470535|fgenesh2_kg.1__489__AT1G05350.1 Length=1617 Score = 1221 bits (661), Expect = 0.0 Identities = 722/752 (96%), Gaps = 2/752 (0%) Strand=Plus/Plus Query 107 GAGAGCTGAAAAATGGAGGTTGGATTCAAGGCATTGCTCGATGATCTTGACGTTCTCGAG 166 |||||||||| ||||||||| | |||||| |||||||||||||||||||| || |||||| Sbjct 69 GAGAGCTGAACAATGGAGGTCGAATTCAAAGCATTGCTCGATGATCTTGATGTCCTCGAG 128 Query 167 AAATCTCTCTCAGATCCGGCTCTGA-TCAACAAGCTGCGATCACATGTTGAGAATCTAGC 225 |||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||| Sbjct 129 AAATCTCTCTCAGATCCGGCTCCGATTC-ACAAGCTCCGATCACATGTTGAGAATCTAGC 187 Query 226 CACTCTGTCTAAATGTAATCCTCACCGGCGTTCCAAAGTCAAGGAACTAAGCTCGGAAGT 285 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 188 CACTCTGTCTAAATGTAATCCTCACCGGCGTTCCAAAGTCAAGGAATTAAGCTCGGAAGT 247 Query 286 GGTAGATAGTAATCCTTACAGTAGGCTTATGGCACTTCAGCGGATGGGCATTGTGGACAA 345 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 248 GGTAGATAGTAATCCTTACAGTAGGCTTATGGCGCTTCAGCGGATGGGTATTGTGGACAA 307 Query 346 CTATGAGAGAATTAGAGAGTTTTCCGTCGCCATTGTTGGAATTGGTGGTGTTGGAAGTGT 405 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 308 CTATGAGAGAATTAGAGAGTTTTCAGTCGCTATTGTTGGAATTGGTGGTGTTGGAAGTGT 367 Query 406 TGCGGCTGAGATGCTTACCAGATGTGGTATTGGTCGTCTTTTGTTGTATGACTATGACAC 465 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 TGCGGCTGAGATGCTGACCAGATGTGGTATTGGTCGTCTTTTGTTGTATGACTATGACAC 427 Query 466 TGTCGAACTAGCTAACATGAACAGACTGTTTTTTAGACCGGACCAGGTTGGTATGACAAA 525 ||| || ||||||||||||||||||||||||||| |||| || ||||||||||||||||| Sbjct 428 TGTGGAGCTAGCTAACATGAACAGACTGTTTTTTCGACCTGATCAGGTTGGTATGACAAA 487 Query 526 GACTGATGCTGCTGTCCAAACCCTTGCAGAAATAAACCCTGACGTAGTTCTTGAAAGTTT 585 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| Sbjct 488 GACTGATGCTGCTGTCCAGACCCTTGCAGAAATAAACCCTGACGTAGTACTTGAGAGTTT 547 Query 586 CACAATGAACATAACAACAGTGCAAGGCTTTGAAACCTTCACGTCCAGCTTGACAAACAA 645 |||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 548 CACAATGAACATAACAACAGTGAAAGGCTTTGAAACCTTCACGTCGAGCTTGACGAACAA 607 Query 646 GTCATTTTGTCCTAGCAAAGAGGGCGGCAGTGGTGTGGATCTTGTTTTGAGTTGTGTCGA 705 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 608 GTCATTTTGTCCTACCAAGGAGGGCGGCAGTGGTGTGGATCTTGTTTTGAGTTGTGTCGA 667 Query 706 TAACTATGAAGCAAGGATGGCTGTCAACCAGGCATGCAATGAGTTACGTCAAACATGGAT 765 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 668 TAACTATGAAGCAAGGATGGCTGTCAACCAGGCATGCAATGAGTTACGTCAAACATGGAT 727 Query 766 GGAGTCAGGTGTATCCGAAGATGCTGTTTCAGGTCACATACAGCTCTTGGTTCCCGGAGA 825 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 728 GGAGTCAGGTGTATCTGAAGATGCTGTTTCAGGTCACATACAGCTCTTGGTTCCCGGAGA 787 Query 826 AACTGCTTGTTTTGCTTGTGCACCTCCCCTGG 857 |||||||||||||||||||||||||||||||| Sbjct 788 AACTGCTTGTTTTGCTTGTGCACCTCCCCTGG 819 Score = 1003 bits (543), Expect = 0.0 Identities = 708/780 (91%), Gaps = 42/780 (5%) Strand=Plus/Plus Query 855 TGGTCGTGGCATCTGGAATTGATGAACGGACACTTAAACGGGAAGGGGTCTGTGCTGCAT 914 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 865 TGGTCGTGGCATCTGGAATTGATGAACGGACACTTAAGCGGGAAGGGGTCTGTGCTGCAT 924 Query 915 CTCTGCCAACTACTATGGGTGTTGTTGCGGGGCTTTTGGTTCAAAACTCTCTCAAGTTCT 974 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 925 CTCTGCCAACTACTATGGGTGTTGTTGCGGGGCTTTTGGTTCAAAACTCTCTCAAGTTCT 984 Query 975 TACTAAATTTTGGTGAAGTTTCTCCATACTTGGGTTATAATTCACTGAAGGATTTTTTCC 1034 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 985 TACTAAATTTTGGTGAAGTTTCTCCATACTTGGGTTACAATTCACTAAAGGATTTTTTCC 1044 Query 1035 CAACCATGAAAATGAGACCAAATCCACAATGCTCGAATGTAGCTTGTCTAGAGCGGCAGA 1094 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1045 CAACCATGAAAATGAGACCAAATCCACAATGCTCGAATGTAGCTTGTCTACAGCGGCAGA 1104 Query 1095 AAGAATATATGCTTGCAAAACCAGAAAGGGATGCTGCTGCTAAAGCTAAGATGGAAGCTG 1154 ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1105 AAGAATACATGCTTGCGAAACCAGAAAGGGACGCTGCTGCTAAAGCTAAGATGGAAGCTG 1164 Query 1155 ATGCATCCACAACTATCGATGAAGGTCCACTCCATGATGATAATGAGTGGAACATAAGTG 1214 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1165 ATGCATCCACAGCTATTGATGAAGGTCCACTCCATGATGATAATGAGTGGAACATAAGTG 1224 Query 1215 TTGTCGATGATGAAAATGAGAAGGATACTACAAAAGCTGCCTCAAGTTCAGATACATTAC 1274 ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1225 TTGTCGACGATGAAAATGAGACGGATACTACAAAAGCTGCCTCAAGTTCAGATACATTGC 1284 Query 1275 CCGAAGGGCTTACTCGGGAGCTTCCAGTTGCAGATGAGTATGAGAAAGCAATAGCCATAG 1334 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1285 CTGAAGGGCTTACTCGGGAGCTCCCAGTTGCAGATGAGTATGAGAAAGCAATAGCCATAG 1344 Query 1335 CCTCAGGGTCAGGAGAAACAGAGGAGGAAGATGACCTTGAAGATCTGAAGAAACAGCTCG 1394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1345 CCTCAGGGTCAGGAGAAACAGAGGAGGAAGATGACCTTGAAGATCTGAAGAAACAGCTCG 1404 Query 1395 AAGCTCTCAACGCTGCTTGAGTCTTTATGAGGGAGAAAAAATAGTTGTTTTAGCATATTT 1454 ||||||| |||||||||||||||||| | | | |||| |||| Sbjct 1405 AAGCTCTTAACGCTGCTTGAGTCTTT-T-------------T--T------AGCAAATTT 1442 Query 1455 ATACATGAAAGAGGCTACAA-GTGCAATTGTGTATGCAAAAAGAGTGTGTTAGGATTGGT 1513 |||||||||||||||||||| ||| | | | | ||||| ||||| | || ||| | Sbjct 1443 ATACATGAAAGAGGCTACAAAGTGTA-T-GCAAAAAAAAAAA-AGTGT-TGGGG-TTGAT 1497 Query 1514 AAATTGGATCTCATGGACATATAAACGTTTTTG-ATGATGACTTCTCCCGtttttttAGT 1572 |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | Sbjct 1498 AAATTGGATCTCATGGACATATAAAC-TTTTTGGATGATGACTTCTCCCGTTTTTTTTTT 1556 Query 1573 -TGTT--ACCAAAGACAA-AAA--------GATACAATTTTGAAGATGTTTCATGGATTT 1620 | || ||||||||||| ||| |||||||||||||||||||||||||| ||| Sbjct 1557 CTTTTTTACCAAAGACAAGAAAAAAAAAAAGATACAATTTTGAAGATGTTTCATGGTTTT 1616 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60982482245 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5