BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05350.1
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470535 jgi|Araly1|470535|fgenesh2_kg.1__489__AT1G05350.1 1221 0.0
> Ahg470535 jgi|Araly1|470535|fgenesh2_kg.1__489__AT1G05350.1
Length=1617
Score = 1221 bits (661), Expect = 0.0
Identities = 722/752 (96%), Gaps = 2/752 (0%)
Strand=Plus/Plus
Query 107 GAGAGCTGAAAAATGGAGGTTGGATTCAAGGCATTGCTCGATGATCTTGACGTTCTCGAG 166
|||||||||| ||||||||| | |||||| |||||||||||||||||||| || ||||||
Sbjct 69 GAGAGCTGAACAATGGAGGTCGAATTCAAAGCATTGCTCGATGATCTTGATGTCCTCGAG 128
Query 167 AAATCTCTCTCAGATCCGGCTCTGA-TCAACAAGCTGCGATCACATGTTGAGAATCTAGC 225
|||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||
Sbjct 129 AAATCTCTCTCAGATCCGGCTCCGATTC-ACAAGCTCCGATCACATGTTGAGAATCTAGC 187
Query 226 CACTCTGTCTAAATGTAATCCTCACCGGCGTTCCAAAGTCAAGGAACTAAGCTCGGAAGT 285
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 188 CACTCTGTCTAAATGTAATCCTCACCGGCGTTCCAAAGTCAAGGAATTAAGCTCGGAAGT 247
Query 286 GGTAGATAGTAATCCTTACAGTAGGCTTATGGCACTTCAGCGGATGGGCATTGTGGACAA 345
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 248 GGTAGATAGTAATCCTTACAGTAGGCTTATGGCGCTTCAGCGGATGGGTATTGTGGACAA 307
Query 346 CTATGAGAGAATTAGAGAGTTTTCCGTCGCCATTGTTGGAATTGGTGGTGTTGGAAGTGT 405
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 308 CTATGAGAGAATTAGAGAGTTTTCAGTCGCTATTGTTGGAATTGGTGGTGTTGGAAGTGT 367
Query 406 TGCGGCTGAGATGCTTACCAGATGTGGTATTGGTCGTCTTTTGTTGTATGACTATGACAC 465
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGCGGCTGAGATGCTGACCAGATGTGGTATTGGTCGTCTTTTGTTGTATGACTATGACAC 427
Query 466 TGTCGAACTAGCTAACATGAACAGACTGTTTTTTAGACCGGACCAGGTTGGTATGACAAA 525
||| || ||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 428 TGTGGAGCTAGCTAACATGAACAGACTGTTTTTTCGACCTGATCAGGTTGGTATGACAAA 487
Query 526 GACTGATGCTGCTGTCCAAACCCTTGCAGAAATAAACCCTGACGTAGTTCTTGAAAGTTT 585
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 488 GACTGATGCTGCTGTCCAGACCCTTGCAGAAATAAACCCTGACGTAGTACTTGAGAGTTT 547
Query 586 CACAATGAACATAACAACAGTGCAAGGCTTTGAAACCTTCACGTCCAGCTTGACAAACAA 645
|||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 548 CACAATGAACATAACAACAGTGAAAGGCTTTGAAACCTTCACGTCGAGCTTGACGAACAA 607
Query 646 GTCATTTTGTCCTAGCAAAGAGGGCGGCAGTGGTGTGGATCTTGTTTTGAGTTGTGTCGA 705
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GTCATTTTGTCCTACCAAGGAGGGCGGCAGTGGTGTGGATCTTGTTTTGAGTTGTGTCGA 667
Query 706 TAACTATGAAGCAAGGATGGCTGTCAACCAGGCATGCAATGAGTTACGTCAAACATGGAT 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TAACTATGAAGCAAGGATGGCTGTCAACCAGGCATGCAATGAGTTACGTCAAACATGGAT 727
Query 766 GGAGTCAGGTGTATCCGAAGATGCTGTTTCAGGTCACATACAGCTCTTGGTTCCCGGAGA 825
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GGAGTCAGGTGTATCTGAAGATGCTGTTTCAGGTCACATACAGCTCTTGGTTCCCGGAGA 787
Query 826 AACTGCTTGTTTTGCTTGTGCACCTCCCCTGG 857
||||||||||||||||||||||||||||||||
Sbjct 788 AACTGCTTGTTTTGCTTGTGCACCTCCCCTGG 819
Score = 1003 bits (543), Expect = 0.0
Identities = 708/780 (91%), Gaps = 42/780 (5%)
Strand=Plus/Plus
Query 855 TGGTCGTGGCATCTGGAATTGATGAACGGACACTTAAACGGGAAGGGGTCTGTGCTGCAT 914
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 865 TGGTCGTGGCATCTGGAATTGATGAACGGACACTTAAGCGGGAAGGGGTCTGTGCTGCAT 924
Query 915 CTCTGCCAACTACTATGGGTGTTGTTGCGGGGCTTTTGGTTCAAAACTCTCTCAAGTTCT 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CTCTGCCAACTACTATGGGTGTTGTTGCGGGGCTTTTGGTTCAAAACTCTCTCAAGTTCT 984
Query 975 TACTAAATTTTGGTGAAGTTTCTCCATACTTGGGTTATAATTCACTGAAGGATTTTTTCC 1034
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 985 TACTAAATTTTGGTGAAGTTTCTCCATACTTGGGTTACAATTCACTAAAGGATTTTTTCC 1044
Query 1035 CAACCATGAAAATGAGACCAAATCCACAATGCTCGAATGTAGCTTGTCTAGAGCGGCAGA 1094
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1045 CAACCATGAAAATGAGACCAAATCCACAATGCTCGAATGTAGCTTGTCTACAGCGGCAGA 1104
Query 1095 AAGAATATATGCTTGCAAAACCAGAAAGGGATGCTGCTGCTAAAGCTAAGATGGAAGCTG 1154
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1105 AAGAATACATGCTTGCGAAACCAGAAAGGGACGCTGCTGCTAAAGCTAAGATGGAAGCTG 1164
Query 1155 ATGCATCCACAACTATCGATGAAGGTCCACTCCATGATGATAATGAGTGGAACATAAGTG 1214
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 ATGCATCCACAGCTATTGATGAAGGTCCACTCCATGATGATAATGAGTGGAACATAAGTG 1224
Query 1215 TTGTCGATGATGAAAATGAGAAGGATACTACAAAAGCTGCCTCAAGTTCAGATACATTAC 1274
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1225 TTGTCGACGATGAAAATGAGACGGATACTACAAAAGCTGCCTCAAGTTCAGATACATTGC 1284
Query 1275 CCGAAGGGCTTACTCGGGAGCTTCCAGTTGCAGATGAGTATGAGAAAGCAATAGCCATAG 1334
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1285 CTGAAGGGCTTACTCGGGAGCTCCCAGTTGCAGATGAGTATGAGAAAGCAATAGCCATAG 1344
Query 1335 CCTCAGGGTCAGGAGAAACAGAGGAGGAAGATGACCTTGAAGATCTGAAGAAACAGCTCG 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 CCTCAGGGTCAGGAGAAACAGAGGAGGAAGATGACCTTGAAGATCTGAAGAAACAGCTCG 1404
Query 1395 AAGCTCTCAACGCTGCTTGAGTCTTTATGAGGGAGAAAAAATAGTTGTTTTAGCATATTT 1454
||||||| |||||||||||||||||| | | | |||| ||||
Sbjct 1405 AAGCTCTTAACGCTGCTTGAGTCTTT-T-------------T--T------AGCAAATTT 1442
Query 1455 ATACATGAAAGAGGCTACAA-GTGCAATTGTGTATGCAAAAAGAGTGTGTTAGGATTGGT 1513
|||||||||||||||||||| ||| | | | | ||||| ||||| | || ||| |
Sbjct 1443 ATACATGAAAGAGGCTACAAAGTGTA-T-GCAAAAAAAAAAA-AGTGT-TGGGG-TTGAT 1497
Query 1514 AAATTGGATCTCATGGACATATAAACGTTTTTG-ATGATGACTTCTCCCGtttttttAGT 1572
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 1498 AAATTGGATCTCATGGACATATAAAC-TTTTTGGATGATGACTTCTCCCGTTTTTTTTTT 1556
Query 1573 -TGTT--ACCAAAGACAA-AAA--------GATACAATTTTGAAGATGTTTCATGGATTT 1620
| || ||||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 1557 CTTTTTTACCAAAGACAAGAAAAAAAAAAAGATACAATTTTGAAGATGTTTCATGGTTTT 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60982482245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5