BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05360.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919234 jgi|Araly1|919234|scaffold_100515.1 2069 0.0
> Ahg919234 jgi|Araly1|919234|scaffold_100515.1
Length=1291
Score = 2069 bits (1120), Expect = 0.0
Identities = 1227/1280 (96%), Gaps = 2/1280 (0%)
Strand=Plus/Plus
Query 211 AAAGAGATATGGGTTATGGAAATCGAGCTTCTTCTAAAACTCCTGCGATCTCAGGTTTGC 270
||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 13 AAAGAGAGATGGGTTCTGGAAATCGAGCTTCTTCTAAAACTCCTCCGATCTCAGGTTTGC 72
Query 271 GTGAAAAGCATCAACAGGATCTTGAAAAACTGACATTGACCTCACAACCATTCAAAACCT 330
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 73 GTGAAAAGCATCAACAGGATCTAGAAAAACTAACATTGACCTCACAGCCATTCAAAACCT 132
Query 331 TGAGATTATTTGTTGTTGCTGTTTTTCTCTATGTTAGAAGATGGTCCTCTTACCTTCTTG 390
||||||| || |||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 133 TGAGATTCTTCGTTGTTGCTGTTTTGCTATATGTTAGAAGATGGTCCTCCTACCTTCTTG 192
Query 391 CAAATGTTGGCTGGCTTATACTTTTTTGTAGCATTTTTGTTGCATTTGCAGCTCTTCTTG 450
||||||||||||||||||| |||||| | |||||||||||||| ||||||||||||||||
Sbjct 193 CAAATGTTGGCTGGCTTATGCTTTTTGGCAGCATTTTTGTTGCCTTTGCAGCTCTTCTTG 252
Query 451 TGACCCTAGATGGGCCTCACGTCAAGCATGTTGAAGAACTGTCTGAGTACACCAGGTTTG 510
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 253 TGACCCTAGATGGCCCTCACGTCAAGCACCTTGAAGAACTGTCTGAGTACACCAGGTTTG 312
Query 511 GACTATGGTGGATATTCTTAGGTGTTGCATCATCAATTGGTCTTGGATCTGGTTTGCATA 570
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 313 GACTATGGTGGATATTTTTAGGTGTTGCATCATCAATTGGCCTTGGATCTGGTTTGCATA 372
Query 571 CATTTGTTCTTTATTTGGGTCCCCATATTGCTTTATTTACCATAAAAGTAATGCAGTGCG 630
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 373 CATTTGTTCTTTATTTGGGTCCCCATATTGCTTTGTTTACCATAAAAGCAATGCAGTGCG 432
Query 631 GGCGAGTCGATTTAAAGAGTGCTATATATGATACAATTCAGTTGAAGAGAAGCCCTTCAT 690
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 433 GGCGAGTCGATTTAAAAAGTGCTATATATGATACAATTCAGTTGAAGAGAAGTCCTTCAT 492
Query 691 GGCTTGATAAACCATGCCACGAGTTTGGCTCCCCAGTTTTTTCTTCTGGAGTTCCTCTTA 750
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 493 GGCTTGATAAACCTTGCCACGAGTTTGGCTCCCCAGTCTTTTCTTCAGGAGTTCCTCTTA 552
Query 751 GCAGTATACTACCACAGGTTCAGATAGAAGCCATCCTATGGGGTCTAGGAACAGCGTTGG 810
|||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 553 GCAGCATACTGCCTCAGGTTCAGATAGAAGCCATCCTCTGGGGTCTCGGAACAGCGTTGG 612
Query 811 GAGAACTTCCTCCTTACTTTATCTCCAGAGCAGCAAGTCTTTCCGGTGGCAAAATGAAAG 870
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 613 GAGAACTTCCTCCTTACTTTATCTCCAGAGCAGCAAGTCTTTCGGGTGGCAAAATGGAAG 672
Query 871 AATTGGAGACATGTTCTGGTGACGATAACGGATTCATTGCTAAACGCGTAAATCAGATCA 930
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AACTGGAGACATGTTCTGGTGACGATAACGGATTCATTGCTAAACGCGTAAATCAGATCA 732
Query 931 AAAGCTGGTTATTGTCGCATTCACAATATCTCAACTTCTTCACAATCCTGATTCTTGCTT 990
|| ||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 733 AAGGCTGGTTATTGTCACATTCACAATACCTCAACTTCTTCACAATTCTGATTCTTGCTT 792
Query 991 CGGTTCCTAACCCATTATTCGACCTTGCTGGAATCATGTGTGGACAATTCGAGAAACCGT 1050
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 793 CGGTTCCTAACCCATTATTTGACCTTGCTGGAATCATGTGTGGACAATTCGAGAAACCGT 852
Query 1051 TTTGGGAGTTTTTCCTTGCAACCTTGATTGGAAAGGCAATCATCAAGACACATATACAGA 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TTTGGGAGTTTTTCCTTGCAACCTTGATTGGAAAGGCAATCATCAAGACACATATACAGA 912
Query 1111 CGGTTTTCATCATATGCGTCTGTAATAATCAGCTTCTTGACTGGGTAGAGAATGAGCTGA 1170
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 CGGTTTTCATCATATGTGTCTGTAATAATCAGCTTCTTGACTGGGTAGAGAATGAGCTGA 972
Query 1171 TATATAT-TCTGAGCTTTGTGCCCGGTTTTGCTTCTGCATTGCCTGAGCTCACAGCGAAA 1229
||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 973 TATATATAT-TGAGCTTTGTTCCCGGTTTTGCTTCTGCATTGCCTGAGCTCACAGCAAAA 1031
Query 1230 CTCCGCTTAATGAAAGAGAAGTACTTGATTGCTTCGCCTCCAGTATCTTCTGATATCAAT 1289
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1032 CTCCGCTTAATGAAAGAGAAGTACTTGGTTGCTTCGCCTCCAGTATCTTCTGATATCAAT 1091
Query 1290 GTCAAGAAATGGGATCTTTCTTTTGCATCCGTGTGGAACGGAGTCGTGTGGCTGATGCTT 1349
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1092 GTCAAGAAATGGGATCTTTCTTTTGCATCAGTGTGGAATGGAGTCGTGTGGCTGATGCTT 1151
Query 1350 TTGAATTTCTTCGGCCAGATTGTGACTTCAACTGCACAGAGATACCTAAAGAAGCAACAA 1409
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TTAAATTTCTTCGGCCAGATTGTGACTTCAACTGCACAGAGATACCTAAAGAAGCAACAA 1211
Query 1410 GAAGAAGAACTAGATGCCTTGACCAACAAGTCGTCGCTGACCTCAAAGAAATCTAAGTAG 1469
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct 1212 GAAGAAGAACTAGATGCCTTAACCAACAAGTCGTCGCTGAGCTCAAAGAGATCTAAGTAG 1271
Query 1470 TCCAGAAATTTATTTATCTT 1489
||||||||||||||| ||||
Sbjct 1272 TCCAGAAATTTATTTCTCTT 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5