BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05370.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919235 jgi|Araly1|919235|scaffold_100516.1 1074 0.0
> Ahg919235 jgi|Araly1|919235|scaffold_100516.1
Length=1396
Score = 1074 bits (581), Expect = 0.0
Identities = 642/672 (96%), Gaps = 2/672 (0%)
Strand=Plus/Plus
Query 586 GGTATTCGCACATTCGTGGATCTATCAACGGCTACGATGATTGTATCAATGCAAGATTTT 645
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 708 GGTATTCGCACATTCGTGGATCTATCAACGGCCACGATGATCGTATCAATGCAAGATTTT 767
Query 646 CAAGACTCGTTTGACTACGACGATTTCTCGTCATCATACCCATCACGAGTCTCCTCCCTA 705
||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct 768 CAAGACTCGTTTGACTACGACGACTTCTCTTCGTCTTACCCATCACGAGTCTCCTCCCTA 827
Query 706 CGATTCGACACGTCATCACTAAAATCAACGGACAAGATCGGCTCATGCGCATCCTCTAGG 765
|||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||
Sbjct 828 CGATTCGACACGTCATCACTCAAATCAACGGACAAGATCGGTTCTTGTGCATCCTCTAGG 887
Query 766 TTCGCTTTCACCGTATCTCGCGACGGACTCGACAC-AGTCAAACCATGGTGTCTCACGTT 824
|||||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||
Sbjct 888 TTCGCTTTCACCGTATCTCGCGACGGTCTCGACACTA-TCAAACCATGGTGTCTTACGTT 946
Query 825 GACTGACACGTCATCAACCAAACTAGGACACAACACAGGCGCGTACATCTCACCGCTTAA 884
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 947 GACTGACACGTCATCATCCAAACTAGGACACAACACAGGCGCGTATATCTCACCGCTAAA 1006
Query 885 CGCGCGTTCTTTCTCTTTCGCGTCACCGGCGGCTAGAAGCGAGCCATTCGGTGGTCCAAG 944
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1007 CGCGCGTTCTTTCTCTTTCGCGTCACCGGCGGCAAGAAGCGAGCCATTCGGTGGTCCAAG 1066
Query 945 GAGGAGCTTCTTCGCTTCCACTCCGATGCCAGCTAGGACCACCGACCGTCACTCTATCGG 1004
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 GAGGAGTTTCTTTGCTTCCACTCCGATGCCAGCTAGGACCACCGACCGTCACTCTATCGG 1126
Query 1005 AACCCTACGGGACCCGCGGATACCTCGCCCGTCTTTCTTCCAATCTCCGGCGATTTTCTT 1064
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1127 AACCCTCCGTGACCCGCGGATACCTCGCCCGTCTTTCTTCCAATCTCCGGCGGTTTTCTT 1186
Query 1065 CCGGCGAGAGTCACACGTCAGCAAAAGTGAGAAACCACGAGATTCGTTCGTTCAGTTTCT 1124
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1187 CAGGCGAGAGTCACACGTCAGCAAAAGTGAGAAGCCACGAGATTCGTTCGTTCAGTTTCT 1246
Query 1125 CAAGTTTTATCGTAGACCGTACGATGAGATGACTTATAGGTCAAAGATGAGGCCACCGCT 1184
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1247 CAAGTTCTATCGTAGACCGTACGATGAGATGACTTATAGGTCAAAGATGCGGCCACCGCT 1306
Query 1185 CGGTGGTCTTGTATCCATTGTTTCAACTCAGATTAGACGCCGTCACGTGTCTTTATCCCA 1244
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1307 CGGTGGTCTTGTCTCCATTGTTTCAACTCAGATTAGACGCCGCCACGTGTCTTTATCTCA 1366
Query 1245 ACGGTTCTAACT 1256
||||||||||||
Sbjct 1367 ACGGTTCTAACT 1378
Score = 795 bits (430), Expect = 0.0
Identities = 444/451 (98%), Gaps = 0/451 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAAGAAAGAGCAGAAGGATCATCATTCAGTAGTAGAGAGCGACGACAAAGTCGAA 60
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 24 ATGGGAAAGAAAGAGCAGAAGGATCATCATTCAACAGTAGAGAGCGACGACAAGGTCGAA 83
Query 61 GCTGTTCTTCATCTCCTTCGTAAACATTCTCCTCTAACTCTTAAACAGGAGAAGTTCTGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 GCTGTTCTTCATCTCCTTCGTAAACATTCTCCTCTAACTCTTAAACAGGAGAAGTTCTGT 143
Query 121 AACAGAGCTTGTGTCGGTAGATTCTTGAGAATAAAAGGAGACAATGTGAAGAAAGCAGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 AACAGAGCTTGTGTCGGTAGATTCTTGAGAATAAAAGGAGACAATGTGAAGAAAGCAGCT 203
Query 181 AAACAGTTAAGGTCTTGCCTTTCATGGAGATCTTCTCTTGGCATTGAGAGTTTGATCGCC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 204 AAACAGTTAAGGTCTTGCCTTTCATGGAGATCTTCTCTTGGCATTGAGAGCTTGATCGCC 263
Query 241 GATGAGTTCACGGCGGAGCTTGCTGAAGGTCTTGCCTACGTCGCTGGTCTTGACGACGAG 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 GACGAGTTCACGGCGGAGCTTGCTGAAGGTCTTGCCTACGTCGCTGGTCTTGACGACGAG 323
Query 301 TGTAGACCCGTTTTGGTTTTCCGCATTAAACAAGATTATCAGAAGCTACATACGCAGAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TGTAGACCCGTTTTGGTTTTCCGCATTAAACAAGATTATCAGAAGCTACATACGCAGAAA 383
Query 361 CAGTTGACACGTTTGGTGGTATTTACATTAGAGGTTGCTATCTCAACCATGTCCAGAAAC 420
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 384 CAGTTGACTCGTTTGGTGGTATTTACATTAGAGGTTGCAATCTCAACCATGTCCAGAAAC 443
Query 421 GTCGAACAATTTGTCATCCTTTTCGATGCTA 451
|||||||||||||||||||||||||||||||
Sbjct 444 GTCGAACAATTTGTCATCCTTTTCGATGCTA 474
Score = 106 bits (57), Expect = 5e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 452 GCTTCTTCAAATCAGCATCAGCTTTCATGAACATACTTGTGACTACACTCAAAATAGTCG 511
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 649 GCTTCTTCAAATCAGCATCAGCTTTCATGAACATACTTGTGACTACACTTAAAATAGTCG 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5