BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G05400.1

Length=996
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg347611 jgi|Araly1|347611|fgenesh1_pg.C_scaffold_5001003           137    1e-31
  Ahg470543 jgi|Araly1|470543|fgenesh2_kg.1__497__AT1G05410.1         84.2    2e-15


> Ahg347611 jgi|Araly1|347611|fgenesh1_pg.C_scaffold_5001003
Length=759

 Score =  137 bits (74),  Expect = 1e-31
 Identities = 153/189 (81%), Gaps = 14/189 (7%)
 Strand=Plus/Plus

Query  159  TTGGGACATGAAG-AGGTGTCCGGTTCCAGATGACTATGATGCTCGTCGGGTTGGTCCGT  217
            ||||| |||| || |  ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct  33   TTGGGGCATG-AGCACTTGTCCGGTTCCCGATGGCTATGATGCTCGTCGGGTTGGTCCGT  91

Query  218  GTATTAAACG-G-ATTTTAAGGAAATCAGGCTACAATGGTCCTGTCACCATCACTG-CTG  274
            |||||||||| | |||  ||| |||| |||||||| ||||  |||| ||||||||| |  
Sbjct  92   GTATTAAACGAGCATTG-AAG-AAATTAGGCTACACTGGTGGTGTCTCCATCACTGGCC-  148

Query  275  TTGGC-TCACTATCAAAGGTCCCT-CGTGACATCCTTG-AAGTGGTCTCTTCCACTGGAA  331
            ||||| | |||| |||| ||| || |  |||||||| | ||| | ||| |||| | ||| 
Sbjct  149  TTGGCAT-ACTAACAAACGTCTCTACC-GACATCCT-GCAAGCGCTCTATTCCTCCGGAG  205

Query  332  TCTCTCTTT  340
            |||||||||
Sbjct  206  TCTCTCTTT  214


> Ahg470543 jgi|Araly1|470543|fgenesh2_kg.1__497__AT1G05410.1
Length=1699

 Score = 84.2 bits (45),  Expect = 2e-15
 Identities = 49/51 (96%), Gaps = 0/51 (0%)
 Strand=Plus/Minus

Query  946   GCATTTGTTACTCGTAAATTGATTAATGAATAAACAAATGACCATCCAAAA  996
             |||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  1699  GCATTTGTTACTCGTAAATTGATTAATGAATAAATAAATGATCATCCAAAA  1649



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37017352407


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5