BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05400.1 Length=996 Score E Sequences producing significant alignments: (Bits) Value Ahg347611 jgi|Araly1|347611|fgenesh1_pg.C_scaffold_5001003 137 1e-31 Ahg470543 jgi|Araly1|470543|fgenesh2_kg.1__497__AT1G05410.1 84.2 2e-15 > Ahg347611 jgi|Araly1|347611|fgenesh1_pg.C_scaffold_5001003 Length=759 Score = 137 bits (74), Expect = 1e-31 Identities = 153/189 (81%), Gaps = 14/189 (7%) Strand=Plus/Plus Query 159 TTGGGACATGAAG-AGGTGTCCGGTTCCAGATGACTATGATGCTCGTCGGGTTGGTCCGT 217 ||||| |||| || | ||||||||||| |||| |||||||||||||||||||||||||| Sbjct 33 TTGGGGCATG-AGCACTTGTCCGGTTCCCGATGGCTATGATGCTCGTCGGGTTGGTCCGT 91 Query 218 GTATTAAACG-G-ATTTTAAGGAAATCAGGCTACAATGGTCCTGTCACCATCACTG-CTG 274 |||||||||| | ||| ||| |||| |||||||| |||| |||| ||||||||| | Sbjct 92 GTATTAAACGAGCATTG-AAG-AAATTAGGCTACACTGGTGGTGTCTCCATCACTGGCC- 148 Query 275 TTGGC-TCACTATCAAAGGTCCCT-CGTGACATCCTTG-AAGTGGTCTCTTCCACTGGAA 331 ||||| | |||| |||| ||| || | |||||||| | ||| | ||| |||| | ||| Sbjct 149 TTGGCAT-ACTAACAAACGTCTCTACC-GACATCCT-GCAAGCGCTCTATTCCTCCGGAG 205 Query 332 TCTCTCTTT 340 ||||||||| Sbjct 206 TCTCTCTTT 214 > Ahg470543 jgi|Araly1|470543|fgenesh2_kg.1__497__AT1G05410.1 Length=1699 Score = 84.2 bits (45), Expect = 2e-15 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 946 GCATTTGTTACTCGTAAATTGATTAATGAATAAACAAATGACCATCCAAAA 996 |||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 1699 GCATTTGTTACTCGTAAATTGATTAATGAATAAATAAATGATCATCCAAAA 1649 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37017352407 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5