BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05410.1
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470543 jgi|Araly1|470543|fgenesh2_kg.1__497__AT1G05410.1 2536 0.0
> Ahg470543 jgi|Araly1|470543|fgenesh2_kg.1__497__AT1G05410.1
Length=1699
Score = 2536 bits (1373), Expect = 0.0
Identities = 1624/1738 (93%), Gaps = 46/1738 (3%)
Strand=Plus/Plus
Query 12 ACAATAAAACTTTGGTTCCTCCGAATTTCGAGTTCTTGTTCTTCCCAAGGCCCCTACTTC 71
||||||| ||||||||| ||| || |||||||||||||||||||||||||| |||||||
Sbjct 1 ACAATAATACTTTGGTTTCTCGGAGGTTCGAGTTCTTGTTCTTCCCAAGGCCGCTACTTC 60
Query 72 GGCCCTAGCATCAACCATTGTCGTTTTAAAGCTCCAGGTTTTCATGGCCAAGAAAGAAGT 131
|||| |||| ||||||| || | | | |||||||||| |||||||||| |
Sbjct 61 GGCCTTAGCTTCAACCA--------TT---G-T-C--GTTTTCATGGGCAAGAAAGAA-T 104
Query 132 -AACTATCGTTGAGATCTTCTGAAATTAATCAGTCTTGAAGTCTCTGGAGATTGTCTTAT 190
||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 105 GAACCATCGTTGAGATCTTCTGCAATTAATCAGTCTCGAAGTCTCTGGAGATTGTCTTA- 163
Query 191 AA-CATGGACTCCATGGATATTGATCAAAGTAACATAGGTGAATCGCCTCACCTTCTGCT 249
|| ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 164 AATCATGGACTCTATGGATATTGATCAAAGTAACAGAGGGGAATCGCCTCACCTTCTGCT 223
Query 250 GAGACCAGTAAGTCCATTGGAATCTGGTGAAGGTTTACCTTATGCTCCTGAGAATTGGCC 309
|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 224 GAGACCAGTAAGGCCAATGGAATCTGGTGAAGGTTTACCGTATGCTCCTGAGAATTGGCC 283
Query 310 TAATCCTGGAGATACTTGGCATTGGAAGGTTGGACCGAGAATTAGCGGTAAAGGCTACTT 369
|||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 284 TAATCCCGGAGATACTTGGCATTGGAAGGCTGGACCGAGAGTTAGCGGTAAAGGCTACTT 343
Query 370 CGTGGATAGATACTTATATCCTCCTAAGTATCTTCCCGGTTTAGATACTGAAATATTGCG 429
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 344 CGTGGATAGATACTTATATCCTCCTAAGTATCTTCCGGGTTTAGATACTGAAATATGGCG 403
Query 430 GAAAAATAAGGTGTTTAGGAGCAGGCTCTCGCTCCAACGATATATTCGTG-TACACTTCC 488
||||||||| || |||||||||| |||||| ||| ||||||| ||||||| ||| |||||
Sbjct 404 GAAAAATAAAGTATTTAGGAGCAAGCTCTCACTCGAACGATACATTCGTGTTAC-CTTCC 462
Query 489 CTGAAGCGGATGTTCAAAAGTTCTTTGCTTCTTTCAGCTGGAGCATACCCTGCAGAGATG 548
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 463 CTGAAGCGGATGTTCAAAAGTTCTTTGCTTCTTTCAGCTGGAGCATACCCTGTAGAGATG 522
Query 549 GTCAAGGTGTTTTGCCTCAGAAGCAGGTTCAGTTACCAGTGTATAGCTCAGATGAAGATC 608
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||
Sbjct 523 GTCAAGATGTTTTGCCTCAGAAGCAGGTTCCGTTGCCAGTGTATAGCTCAGATGAGGATC 582
Query 609 CAATGCGTGATGATGGATCTGATACTGCGGTCTGTAAGGCTGGTAATGAAAAATGCCGGA 668
|||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 583 CAATGCATGATAATGGATCTGATACTGCGGTTTGTAAGGCTGGTAATGACAAATGTGGGA 642
Query 669 GCCTGATGCCACAGTGCGAAGCCGAGACTTTACCTGCTATGCCTTGTGACATTTGCTGCG 728
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GCCTGATGCCACAGTGTGAAGCCGAGACTTTACCTGCTATGCCTTGTGACATTTGCTGCG 702
Query 729 GTGAACGTAAGTTCTGCGT-TGATTGCTGTTGCATCCTTTGCTGCAAGTTAATAAGTTTG 787
|||||| ||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 703 GTGAACCTAATTTCTGC-TCTGATTGCTGTTGCATCCTTTGCTGCAAGTTAATAAGTTTA 761
Query 788 GAGCATGGAGGCTATAGCTATATCAAATGTGAAGCTGTGGTTTCCGAGGGTCACATATGT 847
||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 762 GAGCATGAAGGTTATAGCTATATCAAATGTGAAGCTGTGGTTTCCGAGGGTCATATATGT 821
Query 848 GGACATGTTGCTCATATGAACTGTGCTCTTCGAGCTTATC-TGGCTGGAACCATTGGAGG 906
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 822 GGACATGTTGCTCATGTGAACTGTGCTCTTCGAGCTTA-CATGGCTGGAACCATTGGAGG 880
Query 907 CAGCAT-GGGATTGGATACTGAATACTACTGCAGGCGATGTGACGCCAAAAAGGACTTGT 965
|||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 881 CAGCATCGGG-TTGGATGCTGAGTACTACTGCAGGCGATGTGACGCCAAAAAGGACTTGG 939
Query 966 TTCCACATGTCAACAAGTTTCTAGAAATATGTCAGACTGTAGAATATCAAGGCGACGTGG 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TTCCACATGTCAACAAGTTTCTAGAAATATGTCAGACTGTAGAATATCAAGGCGACGTGG 999
Query 1026 AGAAGATCCTGAATCTCGGTATTTGTATCTTGCGGGGAGCACAAAGAGACAATGCTAAGG 1085
||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 1000 AGAAGATCCTGAATCTCGGTATTTGTATCCTGCAGGGCTCACAAAGAGACAATGCTAAGG 1059
Query 1086 AGCTATTAAATTGTATCGAATCAACAGTCATCAAGCTTAAATGTGGCACGAGCTTGGAAG 1145
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1060 AACTATTAAATTGTATCGAATCAACAGTCATCAAGCTTAAATGCGGCACGAGCTTGGAAG 1119
Query 1146 ATCTCTGGAATGATGATACACCAACTATATGGTCAGATTACTCCGACAGTGGAGAAGCTA 1205
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1120 ATCTCTGGAATGATGATACACCAACTATATGGTCAGATTACTCCGACAATGGAGAAGCTA 1179
Query 1206 GAGAAAATGATACATTGCAAAGTTTACAGGACGTGACTCCAATTGGGCCCATACCATTCA 1265
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1180 GAGACAATGATACATTGCAAAGTTTACAGGACGTGACTCCAATTGGACCCATACCATTCA 1239
Query 1266 ACCATGAGGCTGAGATGCACAAACTCGAAGAAGAAATCGGCGAGGTTCTAAGAGCGCTGA 1325
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1240 ACCATGAGGCTGAGATGCACAAACTCGAGGAAGAAATCGGCGAGGTTCTAAGAGCGCTGA 1299
Query 1326 GAAAGGCTCAGGAATTTGAGTACCAAATTGCAGAAGGCAAACTTCATGCTCAGAAAGAAT 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GAAAGGCTCAGGAATTTGAGTACCAAATTGCAGAAGGCAAACTTCATGCTCAGAAAGAAT 1359
Query 1386 GTCTGAGTGATCTGTATAGGCAGCTCGAGAAGGAGAAGTCAGAGCTGTCGAGGCGAGTAT 1445
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1360 GTCTGAGTGATCTGTATAGGCAACTCGAGAAGGAGAAGTCAGAGCTGTCGAGGCGAGTAT 1419
Query 1446 CAGGTACAGATGCGAATAGCTTGATGACGAATGTGCTGAAGAGATTGGATCAGATTAGAA 1505
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1420 CAGGTACAGATGTGAATAGCTTGATGACGAATGTGTTGAAGAGATTGGATCAGATTAGAA 1479
Query 1506 AAGAAGTCACAAAGCTTAAAGAAATGGAAGAAGTAGCCAAGGGATTTGGTAGGACACCTA 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 AAGAAGTCACAAAGCTTAAAGAAATGGAAGAAGTAGCCAAGGGATTTGGTAGGACACCTA 1539
Query 1566 GAGGGGTTCTTGAAGAGTACTTTCATCTAAACATCGAGGACTAAGATTTATATAAGCACA 1625
|||| ||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 1540 GAGGAGTTCTTGAAGAGTACTTTCATCTAAGCATCGAGGACTAA--T---------CA-- 1586
Query 1626 TCCATAATTGTACATTCGTTATGACGTTTGTTTTG-TAAGTTTTTGATTCTTCCTCGTAA 1684
| | | |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1587 T--A-A-TTGTACATTCGTTATGACGTTTGTTT-GCTAAGTTTTTGATTCTTCCTCGTAA 1641
Query 1685 ATCTGAGTTTTGGATGGTCATTTGTTTATTCATTAATCAATTTACGAGTAACAAATGC 1742
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1642 ATCTGAGTTTTGGATGATCATTTATTTATTCATTAATCAATTTACGAGTAACAAATGC 1699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65362860420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5