BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05420.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919239 jgi|Araly1|919239|scaffold_100520.1 1020 0.0
> Ahg919239 jgi|Araly1|919239|scaffold_100520.1
Length=734
Score = 1020 bits (552), Expect = 0.0
Identities = 650/695 (94%), Gaps = 16/695 (2%)
Strand=Plus/Plus
Query 1 ATGCCAAGAGTCATGTGGAAAAACTTCCATCTTTGCTTCCCATCAAATCTCACCAAGCCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 21 ATGCCAAGAGTCATGTGGAAAAACTTCCATCTTTGCTTCCCATCAAATCTCACCACGCCC 80
Query 61 TCTTCATCTCCGTCCGGTGCCACCTCCGACGATCCCAACCGTCCATCCATTCTTCTCATC 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TCTTCATCTCCGTCCGATGCCACCTCCGACGATCCCAACCGTCCATCCATTCTTCTCATC 140
Query 121 AACAACTTTAACCTCCTATATGACGACTCCTCCGCCGCCCACCGCCGCC---TATCCAAG 177
|||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 141 AACAACTTCAACCTCCTCTACGACGACTCCTCCGCCGCCCACCGCCGCCGCCTATCCAAG 200
Query 178 CCTCTTATCCACGACGTTGAACCCTCTTCCACCTTCACCGCCTCCACCTCCACCGCAGCT 237
||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 201 CCTCTCATCGACGACGTTGAACCCTCTTTCACCTTCACCGCCTCCACCTCCACCGCAGCT 260
Query 238 AACTCTTCTTCCTCCTCTGCCTCTTATGATGATTCCGATAATTACGGTTTTGCCCCTGAC 297
|||||||||||||| |||||||| || ||||| |||||||||||||||||| ||||||||
Sbjct 261 AACTCTTCTTCCTCTTCTGCCTCCTACGATGACTCCGATAATTACGGTTTTCCCCCTGAC 320
Query 298 GACGACTCTCCCCCTCCTGACTTAACCGCCGTTTTAGCCTCCCGCCGCTTCTTCTTCTCT 357
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 321 GACGACTCTGCCCCTCCTGACTTAACCGCCGTTTTAGCCTCCCGTCGCTTCTTCTTCTCT 380
Query 358 TCTCCTGG-CTGCTCAAACTCAATCACTGACTCGCCAGATCTCCGCTGCCGGGATAATTA 416
|||||||| | |||| |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 381 TCTCCTGGTC-GCTCCAACTCAATCACTGACTCGCCGGATCTCCGCTGCCAGGATAATTA 439
Query 417 CGATACTGCCACTA---------GGCTTCTTACCGGAGGAACCGCCGTGAAACA-CTACG 466
|||||||||||||| ||||||| ||||||||||| ||||||||||| | |||
Sbjct 440 CGATACTGCCACTACTACCACTAGGCTTCTCACCGGAGGAACAGCCGTGAAACAAC-ACG 498
Query 467 TGCAATCTCCTGATCCGTACAACGACTTCCGACGATCAATGCAGGAGATGATCGACGCCG 526
|||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 499 TGCAATCTCCTGATCCTTACAACGACTTCCGGCGATCAATGCAGGAGATGCTCGACGCCG 558
Query 527 TTACAAACGCCGGAGATCTTCGCCGTTACGAGTTCTTGCATGAGCTGTTACTCAGTTACC 586
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 559 TTACAAACGCCGGAGATCTTCGCCGTTACGAGTTCTTGCACGAGCTGTTACTCAGTTACC 618
Query 587 TCTCTTTAAATGCCGCCGATACACACAAGTTCATTATCAGAGCTTTCGCCGACATTCTCG 646
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 619 TCTCTTTGAATGCCGCCGATACACACAAGTTCATTATCAGAGCCTTCGCCGACATTCTCC 678
Query 647 TCTCTCTCCTATCGGACGGTCACCGGATCAGCTGA 681
|||||||| ||||||||||||| ||||||||||||
Sbjct 679 TCTCTCTCTTATCGGACGGTCATCGGATCAGCTGA 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5