BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05430.1
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470544 jgi|Araly1|470544|fgenesh2_kg.1__498__AT1G05430.1 1507 0.0
> Ahg470544 jgi|Araly1|470544|fgenesh2_kg.1__498__AT1G05430.1
Length=1012
Score = 1507 bits (816), Expect = 0.0
Identities = 935/992 (94%), Gaps = 9/992 (1%)
Strand=Plus/Plus
Query 81 GAAC-ACGATGGCTATGGCCGCTTTAAATCAGCTTTTTGT-TGTCCTAGCCTCAAAACCC 138
|||| |||||||||||||||||||| ||||||| |||| | |||||| || ||||||||
Sbjct 25 GAACTACGATGGCTATGGCCGCTTTGAATCAGC-TTTTCTATGTCCTCGCGACAAAACCC 83
Query 139 GAGCAGGAGAAGATCACGCCTGAAGAGTCTAGAGCTATTGTCTCTTGCCATTTCAAAGCT 198
|||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||| |
Sbjct 84 GAGCAGGAGAAGATAACGCCTGAAGAGTCTAGTGCTATTATCTCTTGCCATTACAAAGTT 143
Query 199 TTGTGGACAGCTGGTTTTGCGTCTGGTGTAGGGGGAGGTTTAACTTGGCAAGTGACAAAG 258
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 144 TTGTGGACTGCTGGTTTTGCGTCTGGTGTAGGGGGAGGTTTAACTTGGCAAGTTACAAAG 203
Query 259 AAGTTGAAAAAGCCGAAAGGACTTGAGAGGGTTGCTCTTGC-AGCTGGAGTTGCTGCTTC 317
|||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||| |
Sbjct 204 AAGTTGAAAAAGCCGAAAGGACTTGAGAGGATTGCTCTTGCTA-CTGGAGTGGCTGCTGC 262
Query 318 GACTTTTGTTGTTGCTTGGAATTGGTCAAGTTCCAAATATGCAGTTTCATCCCTTGATCA 377
||||||||||||||||||||| || ||||||||||| |||||||||||| ||| |||||
Sbjct 263 GACTTTTGTTGTTGCTTGGAAACGGGCAAGTTCCAAAAATGCAGTTTCATGCCTAGATCA 322
Query 378 TATCCTTAGTCAAGATGCTACACGAATGCAGAAAGAGCTTGTGAATGTCTTAGTCAGGTC 437
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 323 TATCCTTAGTCAAGATGCAACACGAATGCAGAAAGAGCTTGTCAATGTCTTAGTCAGGTC 382
Query 438 CAACAGAGGTGAAGCTTGGAGATGGCAACTTATGTCCAAGCATTTCTACCCTGAATCTGT 497
||| |||||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 383 CAATAGAGGTGAAGATTGGAGGTGGCAACTTATGTCCAAGCATTTTTACCCCGAATCTGT 442
Query 498 TTACGGTGATGAAGGAGACAAACCTCAAATGCGTTGGCGTAGACGAACCACTTTCACTGA 557
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 443 TTATGGTGATGAAGGAGACAAACCTCAAATGCGTTGGCGTAGACGAACCACTTTCACCGA 502
Query 558 AATTGCCTCTTCTTATGATGATGTCAATGCAACCAAATCTCAGAGAAACCCCAATGGCTT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 AATTGCCTCTTCTTATGATGATGTCAATGCAACCAAATCTCAGAGAAACCCCAATGGCTT 562
Query 618 ACCAAACCCTTCTCATCGAAGAATTTCCGGTGGATCTGATGCTTCAAAGACTAAACAGAC 677
||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||
Sbjct 563 ACCAAACCCTTCTCATCGAAGCATTTCCAATGGATCTGATGCTTCAAAGACTAAACCGAT 622
Query 678 GCTCCAAAATAGCTCTGGAAACTCGGATGGCGAAATGGCGGAAGAAGATGTTCTTGACAT 737
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 623 GCTCCAAAATAGCCCTGGAAACTCGGATGGCGAAATGCCGGAAGAAGATGTTCTTGACAT 682
Query 738 TGTATTTGGTTGTTCAGAAGCAACAGAGAGCATTCCTGCGCCAGTTATTTCAAAACTTGC 797
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 683 TGTATTTGGTGGTTCAGAACCAACAGAGAGCATTCCTGCGCCAGTTATTTCAAAGGTTGC 742
Query 798 TAGCAAAACGCAAACTCGCAAACAGAAAAGAGCTCAACGGAGACAGAGGCTTAAAAACCG 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 TAGCAAAACGCAAACTCGCAAACAGAAAAGAGCTCAACGGAGACAGAGGCTTAAAAACCG 802
Query 858 TGAAGCTTCCACAAATACTCCTCAGTATGAACTTGCATAGAGAAAACAAAACAATTATGC 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TGAAGCTTCCACAAATACTCCTCAGTATGAACTTGCATAGAGAAAACAAAACAATTATGC 862
Query 918 TTCTTCTGCTTTATGTTTATCACACATGTATTTGTCTCTTTATCGATTGCTT-AAGTTCT 976
||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |
Sbjct 863 TTCTTCTGCTTTATGTTTATCAC-CATGTATTTGTCTCTTTATCGATGGCTCCAAGTT-T 920
Query 977 TATTCC-AATTTATCATTTTGAATCTCATTTTATGAAGGATGATTATGTAAGAATATTGT 1035
| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 921 CAATCCCAATTTGTCATTTTGAATCCCATTTTATGAAGGATGATTATGTAAGAATATTGT 980
Query 1036 TATTGAAGATGATAAGATCTTTTCATTTTACC 1067
||||||||||||||||||||||||||| ||||
Sbjct 981 TATTGAAGATGATAAGATCTTTTCATTGTACC 1012
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 40 ACTTGTTCTTCGATTCGTTTCTGGGAACT 68
|||||||||||||||||||||||||||||
Sbjct 1 ACTTGTTCTTCGATTCGTTTCTGGGAACT 29
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5