BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05440.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919242 jgi|Araly1|919242|scaffold_100523.1 1572 0.0
> Ahg919242 jgi|Araly1|919242|scaffold_100523.1
Length=1171
Score = 1572 bits (851), Expect = 0.0
Identities = 1078/1185 (91%), Gaps = 25/1185 (2%)
Strand=Plus/Plus
Query 4 AGATGATAAACAGAGAAACCATGAAAGGAAAGATTTTAGTTTCACCGTCGGAGAAATCAA 63
|||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1 AGATGATAAACAAAGAAACCATGAAAGGAAAGATATTAGTTTCACCGTCGGAG------A 54
Query 64 TGACATCGAGCACAACAACAACAACGACGACTACTACAACTGTATCTACGGAAGATTGGG 123
| |||||||||||||||||| ||||| ||||| || ||||||||||||||||||| ||
Sbjct 55 --A-ATCGAGCACAACAACAACGACGACTACTACAACTACTGTATCTACGGAAGATTCGG 111
Query 124 AGAGAAGAGACAGTAATTGTTACTTCCCAGACTGTCGTAAAGATGCGAATTGTAGCTGCG 183
||| ||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 112 AGAAAAGAGACAGTAATTGTTACTTCCCAGATTGTCGTAAAGATGCGAATTGCAGTTGCG 171
Query 184 AGATTTGTCTTGATAGTCTCAACGCTACGCTTGATCTCATGCCTCTCAGTGTTCAAAAAA 243
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 172 AGATTTGTCTTGACAGTCTCAACGCAACGCTTGATCTCATGCCTCTCAGTGTACAAAAAA 231
Query 244 GCTCTCTCACTAAGCTTTCTTCTGCATCCAATTTCAAATCCACCGTTGAATCTACTCCGA 303
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 232 GCTCTCTCACTAAGCTTTCTTTTGCCTCCAATTTCAAATCCACCGTTGAATCTACTCCGA 291
Query 304 CTTCGTTTGATCCAACGGTGGTCACCAC-CCCTGCTTCTGTTTCTCGCCCAATCTTGAAG 362
||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 292 CTTCGTTTGATCCGACGGTGGTCACCACACCC-GCTTCTGTTTCTCGCCCAATCTTGAAG 350
Query 363 TTGATGATCTCTTCCCCGAAGAAGAAACTGACCAAGAAATCAAAAGTTTTCGAGAATGAA 422
|||||||||||||| ||||||||||| | | |||||| ||||||||| ||||||||||
Sbjct 351 TTGATGATCTCTTCGCCGAAGAAGAAGCAAATTAAGAAAGCAAAAGTTTCCGAGAATGAA 410
Query 423 GAACAGAGGAAAACGACGAAGAAAGAGAGAAGACTACTGATTGTTGTTTTTCTGAAAGT- 481
|||||||||||||||||||||||||| ||||| ||||||||| | ||| |||||||| |
Sbjct 411 GAACAGAGGAAAACGACGAAGAAAGAAAGAAGCCTACTGATTCTCGTTGTTCTGAAACTA 470
Query 482 GATTTTGGTGATTGGGTTGGTTCTGGGTTTGGAATTAGGGTTTAGTTGGGTGCTTGAAGA 541
| ||||||||||||||||||||||| ||| ||| |||||||||||||||||| || |||
Sbjct 471 G-TTTTGGTGATTGGGTTGGTTCTGTGTTCGGAGTTAGGGTTTAGTTGGGTGTTTAAAG- 528
Query 542 GGTTTTT-AAACCTGAATTTACAGAGGAGATTGTGAGGAACGCTTA-TGAGAGAACTCAG 599
|| |||| ||||||||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 529 GGCTTTTGAAACCTGAATTTACAGAGGAGATAGTGAGGAACG-TTGGTGAGAGAACTCAG 587
Query 600 GCTGATCTTGATTTGGGGGTGAAGCTGAGACTCTTGGAAGATGAATTTAAGGGTTTTGTT 659
|||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 588 GCTGATCTTGATCTGGGTGTGAAGCTGAGACTCTTGGAAGACGAATTAAAGGGTTTTGTT 647
Query 660 A-CGAGTAGA-AAGTTTTCGAGATGCACAGGTTCTGATTCTAAATGGAAAATCAATCAGG 717
| | | | || ||||||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct 648 AACAA-T-GACAAGTTTTCGAGTTGCGGAGGTTCTGATTCTAAATGGAAAATCATTCAGG 705
Query 718 ATGGACCAATGTTGAACTCAAAGTGTGTTCTGTACAAATCTGCCATTGAAGAGGTGAGTA 777
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 706 ATGGTCCAATGTTGAACTCAAAGTGTGTTCTGTATAAATCCGCCATTGAAGAGGTGAGGA 765
Query 778 TATGGGGATGGCCTTTGCAGACATCTGGATTGTTCCATACCGGCTTCTCCTCGAGTTCGA 837
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 766 TATGGGGATGGCCTTTGCAGACATCTGGATTGTTCCATACCGGTTTCTCATCAAGTTCGA 825
Query 838 TCACCGTGTTATCAGGCCGAGTAACTGAGTGGACAGAGGGGAAATTCGGTTACTCAATAC 897
||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || |
Sbjct 826 TCACCGTGTTATCAGGCCGAGTAACCGAGTGGACAGAGGGGAAATTCGGTTACACGATGC 885
Query 898 ACGAGACCAACACTTCCTGGGGGAAAACCAAATGGAGCACATCGGTTCTGCAGCTAGATC 957
||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 886 GCGAGACCAATACTTCATGGAGGAAAACCAAATGGAGCACATCGGTTCTGCAACTAGATC 945
Query 958 CAAACACATGGGTTCTTGAGTACAGCCAAAGCTCGGTGATGGATGATAGTTCAAGTTTGT 1017
|||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 946 CAAACACATGGGTTCTTGAGTACAGCAAAAGCTCGGTGATAGATGATAGTTCGAGTTTGT 1005
Query 1018 TGTCACTAACAATCGATATCATGGAACACTTGGTGTTCCGAGTAGCAAAGAATGTGAATC 1077
||||||||||||| ||| |||| ||||| |||||||||||| |||||||||||| ||||
Sbjct 1006 TGTCACTAACAATGGATCTCATCAAACACATGGTGTTCCGAGCAGCAAAGAATGTAAATC 1065
Query 1078 GGGAGCGTTAT-TGGATGTTTTCATCCTCACG-ACGATTGTATAGAGAAGCAGAGTCAAA 1135
||||| ||| | |||||||||||| ||||| | | | |||||||| |||||||| |||||
Sbjct 1066 GGGAG-GTTTTCTGGATGTTTTCAGCCTCAGGGA-GTTTGTATAGTGAAGCAGAATCAAA 1123
Query 1136 GGCTAGCGCAATGACACCAACTTAGAAACTTATGAGaaaaaaaaa 1180
||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1124 GGCTAGCACAATGACACCAACTTAGAAACTTATGAGGAAAAAAAA 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5