BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05450.2
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470546 jgi|Araly1|470546|fgenesh2_kg.1__500__AT1G05450.2 952 0.0
> Ahg470546 jgi|Araly1|470546|fgenesh2_kg.1__500__AT1G05450.2
Length=771
Score = 952 bits (515), Expect = 0.0
Identities = 683/759 (90%), Gaps = 32/759 (4%)
Strand=Plus/Plus
Query 79 AGTCTAAACACAAAAATGAACTCCAATAGTTTCTTAATCTCAGCAGCCTTAATCTTCTCT 138
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AGTCTAAACACAAAAATGAACTCCAATATTTTCTTAATCTCAGCAGCCTTAATCTTCTCC 60
Query 139 CTACTATCATCAAATTCTCCAACATCGATTCTTGCTCAAATCAATACACCATGTTCACCA 198
|||| | |||||||||||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 61 CTAC--T-ATCAAATTCTCCAATATCGATTCTTGCTCAAATCAGTACTCCATGTTCACCA 117
Query 199 TCTATGCTCTCTAGCGTTACAGGTTGCACGAGTTTTCTAACGGGAGGTGGTAGTTTTCCG 258
| |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 118 ACCATGCTCTCTAGCGTTACAGGGTGCATGAGTTTTCTAACGGGAGGTGGTAGTTCTCCG 177
Query 259 ACCTCAGATTGTTGTGGGGCTCTTAAATCGTTAACCGGAACCGGTATGGACTGTTTGTGT 318
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 178 ACCTCAGATTGTTGTGGGGCTCTTAAATCCTTAACCGGAACCGGTATGGACTGTTTGTGT 237
Query 319 CTGATAGTAACCGCAGGTGTTCCAATCAGTATTCCTATAAACCGAACTTTAGCCATCTCT 378
||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||
Sbjct 238 CTGATAGTAACCGCAAGTGTTCCAATCAATATTCCTATAAACCGAACTCTAGCCATATCT 297
Query 379 CTCCCTCGTGCATGTGGCATTCCTGGTGTCCCCGTTCAATGCAAAGCTTCTGCAGCACCT 438
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 298 CTTCCTCGTGCATGTGGCATGCCCGGTGTCCCCGTTCAATGCAAAGCTTCTGCAGCACCT 357
Query 439 CT-CC--C------TACTCCAGGTCCTGCGTCTTTCGGTCCGACCACTTCTCCTACAGAT 489
|| || | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTTCCTGCCCCAGGTACTTCAGGTCCTGCGTCTTTCGGTCCGACCACTTCTCCTACAGAT 417
Query 490 TCGCAAACTTCTGATCCTGAAGGGTCTGCTTCTTTCCGTCCGCCCACTTCTCCGACAACT 549
|| |||||||| |||||||||||||||| ||||||| |||| || |||||||||||||||
Sbjct 418 TCACAAACTTCGGATCCTGAAGGGTCTGGTTCTTTCGGTCCACCTACTTCTCCGACAACT 477
Query 550 TCGCAAACTCCTAATGACAAGGATCT-CAGCGGATCGGGCAACGGAGGAGATC-CAATGG 607
||||||| |||||||||| ||||| | |||||||||||||||||||||||| | ||||||
Sbjct 478 TCGCAAAATCCTAATGACCAGGAT-TACAGCGGATCGGGCAACGGAGGAGA-CACAATGG 535
Query 608 GGTTTGCTCCACCTCCACCCTC-GTCGTCGCCTTCCTCTTCGCACTCTCTCAAGCTTTCG 666
|||||| |||||| || || || | | ||| ||||||||||||||||||||||||||||
Sbjct 536 GGTTTGGTCCACCACCTCCTTCAGCC-TCGTCTTCCTCTTCGCACTCTCTCAAGCTTTCA 594
Query 667 TATCTTCTATTTGCTTTCGCCTTTAC-GATTATCAAATTCATCTAATTAA--A--GAGCA 721
||||||||||||||||| |||| ||||||||||||||||||||||| | |||||
Sbjct 595 CGTCTTCTATTTGCTTTCGT-TTTAATGATTATCAAATTCATCTAATTAATTATAGAGCA 653
Query 722 ATACCATACTATAAAAGACGTTCTTTACG-TT-CATATTTTACCTGATTCTTGTTAAAAT 779
|| ||||| | || || | |||||| || |||||||||||||||||| ||||||||
Sbjct 654 ATTCCATAG-A-AAC-GA--T-CTTTACACTTTCATATTTTACCTGATTCTGGTTAAAAT 707
Query 780 AATGTTTTAGAGTTTTGTTGTATTTGATAGCCCTATTAA 818
||||||||| |||||||||||||||||||||||||||||
Sbjct 708 AATGTTTTAAAGTTTTGTTGTATTTGATAGCCCTATTAA 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31032054438
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5