BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05470.1
Length=2696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333866 jgi|Araly1|333866|fgenesh1_pg.C_scaffold_1000431 1478 0.0
Ahg482131 jgi|Araly1|482131|fgenesh2_kg.4__1191__AT2G32010.1 881 0.0
> Ahg333866 jgi|Araly1|333866|fgenesh1_pg.C_scaffold_1000431
Length=1653
Score = 1478 bits (800), Expect = 0.0
Identities = 874/911 (96%), Gaps = 0/911 (0%)
Strand=Plus/Plus
Query 1356 ATGATGATAATGGTCTTGGGGATTCTCCAAGCACTGTCTTGTACTCACCAGGTTCTGCAG 1415
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 743 ATGATGATAATGGTCTCGGGGATTCTCCAAGCACCGTCTTGTACTCACCAGGTTCTGCAG 802
Query 1416 CAAACGAGAATGGATATAGGATCCCATGGAACTCTTCGCAGTATTGTTTAGTTGCTAGCA 1475
||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 803 CAAACGACAATGGATATAGAATCCCGTGGAACTCTTCACAGTATTGTTTAGTTGCTAGCA 862
Query 1476 AACAAATGGTGGGTGTCTTCTTAACCATTTGGGTGAAAAGTGAGCTAAGAGAACACGTCA 1535
|||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| |
Sbjct 863 AACAAATGGTGGGTGTCTTCCTAACTATTTGGGTGAAAAGCGAGCTAAGAGAACACGTTA 922
Query 1536 AGAACATGAAAGTATCTTGTGTTGGCAGGGGACTGATGGGTTATCTTGGAAATAAGGGAT 1595
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 923 AGAACATGAAAGTATCTTGTGTTGGCAGAGGACTGATGGGTTATCTTGGAAATAAGGGAT 982
Query 1596 CAATCTCAATAAGCATGTTGCTCCATCAAACAAGCTTTTGCTTCGTTTGTACGCACTTGA 1655
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 983 CGATCTCAATAAGCATGTTGCTCCATCAAACAAGCTTTTGCTTCGTCTGTACCCACTTGA 1042
Query 1656 CTTCGGGACAAAAAGAAGGCGATGAGCTAAAGAGAAACTCTGATGTCATGGAGATACTGA 1715
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1043 CTTCGGGACAAAAAGAAGGTGATGAGCTAAAGAGAAACTCTGATGTCATGGAGATACTCA 1102
Query 1716 AGAAAACGAGGTTTCCGCGCGTTAAGAGTTCAGAGGAAGAAAAGTCCCCTGAGAACATCC 1775
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1103 AGAAAACGAGATTTCCTCGCGTTAAGAGTTCAGAGGAAGAAAAGTCCCCTGAGAATATCC 1162
Query 1776 TTCAGCATGACCGGGTAATATGGCTTGGCGATCTAAACTACCGTATAGCACTGTCTTATC 1835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1163 TTCAGCATGACCGGGTAATATGGCTTGGCGATCTAAACTACCGTATAGCACTGTCTTACC 1222
Query 1836 GATCTGCCAAAGCGCTTGTTGAGATGCAGAATTGGAGAGCTTTACTTGAAAATGACCAGT 1895
||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1223 GATCTGCCAAAGCACTCGTTGAGATGCAGAATTGGAGAGCTTTACTAGAAAACGACCAGT 1282
Query 1896 TAAGAATTGAGCAAAAACGAGGCCATGTGTTTAAGGGATGGAATGAAGGAAAGATTTATT 1955
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1283 TAAGAATTGAGCAAAAAAGAGGCCATGTTTTTAAGGGATGGAATGAAGGAAAGATTTATT 1342
Query 1956 TCCCACCAACGTACAAGTACTCGAGGAACTCAGATAGATACTCTGGAGATGATTTGCATC 2015
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 1343 TCCCACCAACCTACAAGTACTCGAGGAACTCAGATAGATATTCTGGAGACGATCTGCATC 1402
Query 2016 CCAAGGAGAAACGTCGCACTCCTGCTTGGTGTGATAGGATATTGTGGTTTGGTGAAGGAC 2075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 CCAAGGAGAAACGTCGCACTCCTGCTTGGTGTGATAGGATATTGTGGTTTGGTGAAGGAC 1462
Query 2076 TGCATCAGTTATCTTATGTAAGAGGAGAGTCACGGTTCTCTGATCATAGACCGGTCTACG 2135
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1463 TGCATCAGTTATCATACGTAAGAGGAGAGTCACGGTTCTCGGATCATAGACCGGTCTATG 1522
Query 2136 GCATTTTCTGTGCAGAGGTTGAGTCAGCTCATAATAGGATAAAGCGAACAACGAGTTACT 2195
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1523 GCATTTTCTGTGCAGAGGTTGAGTCAGCTCATAATAGGTTAAAGCGAACAACGAGTTACT 1582
Query 2196 CCGCTTCACGGGTCCAAGCTGAAGAGCTCTTACCTTACTCCCGTGGATACACCGAGCTCA 2255
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1583 CCACTTCACGGGTCCAAGCTGAAGAACTCTTACCTTACTCCCGTGGATACACCGAGCTCA 1642
Query 2256 GCTTCTTCTAG 2266
|||||||||||
Sbjct 1643 GCTTCTTCTAG 1653
Score = 1275 bits (690), Expect = 0.0
Identities = 726/744 (98%), Gaps = 0/744 (0%)
Strand=Plus/Plus
Query 440 AAGCTGGCATGGTCCAAGAAGATGGTAAGGAAATGGTTCAATATCAAAAGCAAAACAGAG 499
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4 AAGCTGGCATGGTCCAAGAAGATGGTTAGGAAATGGTTCAATATCAAAAGCAAAACAGAG 63
Query 500 GAGTTTCAAGCAGATGATCCTTCTTCTGCTGGAATTGAAGTAGAGCATAGAAGTAGCTTT 559
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 64 GAGTTTCAAGCAGATGATCCTACTTCTGCTCGAGTTGAAGTAGAGCATAGAAGTAGCTTC 123
Query 560 TCAGCTGAGAAAGCACCTTCCACAATCAAGAATACCAAAACTGAGAAACTCAGTAAGAAC 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TCAGCTGAGAAAGCACCTTCCACAATCAAGAATACCAAAACTGAGAAACTCAGTAAGAAC 183
Query 620 TGGGAGCAGCAAGCTCGGCAAAGGAGAATGAATTATGAGAATCCTAGGATCATTGATGTC 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TGGGAGCAGCAAGCTCGGCAAAGGAGAATGAATTATGAGAATCCTAGGATCATTGATGTC 243
Query 680 CAAAACTACAGCATCTTTGTGGCTACATGGAACGTAGCTGGACGCTCTCCTCCTTCAGAC 739
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 244 CAAAACTACAGCATCTTTGTAGCTACATGGAACGTAGCTGGACGCTCTCCTCCTTCAGAC 303
Query 740 TTAAACCTTGATGAGTGGCTTCATTCATCAGCTCCTGCTGATATCTATGTACTCGGATTC 799
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 304 TTAAACCTTGATGAGTGGCTTCATTCATCAGCTCCTGCAGATATATATGTACTCGGATTC 363
Query 800 CAAGAGATTGTTCCTCTTAATGCTGGAAATGTCCTTGGAGCTGAAGACAATGGACCTGCT 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CAAGAGATTGTTCCTCTTAATGCTGGAAATGTCCTTGGAGCTGAAGACAATGGACCTGCT 423
Query 860 CAGAAATGGCTCTCTCTTATCCGAAAAACGCTTAATAACCGACCAGGAACTAGCGGAACC 919
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 424 CAGAAATGGCTCTCTCTTATCCGTAAAACGCTCAATAACCGACCAGGAACTAGTGGAACC 483
Query 920 AGCGGTTATCACACGCCTTCCCCTATCCCTGTGCCTATGGCAGAGCTTGATGCTGATTTC 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 AGCGGTTATCACACGCCTTCCCCTATCCCTGTGCCTATGGCAGAGCTTGATGCTGATTTC 543
Query 980 TCTGGATCTACAAGGCAAAAGAACTCTACTTTCTTCCACAGACGGTCTTTTCAGACCCCG 1039
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TCTGGATCCACAAGGCAAAAGAACTCTACTTTCTTCCACAGACGGTCTTTTCAGACCCCG 603
Query 1040 AGTAGTACATGGAATGATCCTTCTATTCCTCAGCCAGGTCTTGACCGTCGTTTCAGCGTC 1099
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 604 AGTAGTACATGGAATGATCCTTCCATTCCTCAGCCAGGTCTTGACCGTCGTTTCAGCGTC 663
Query 1100 TGTGACCGTGTCTTCTTCAGCCACAGGCCAAGTGATTTCGACCCGAGTTTCCGTGGTAGC 1159
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 664 TGTGACCGTGTATTCTTCAGCCACAGGCCAAGTGATTTCGACCCAAGTTTCCGTGGTAGT 723
Query 1160 AGCAGCAGTCATAGGCCTAGTGAT 1183
||||||||||| ||||||| ||||
Sbjct 724 AGCAGCAGTCACAGGCCTAATGAT 747
> Ahg482131 jgi|Araly1|482131|fgenesh2_kg.4__1191__AT2G32010.1
Length=2647
Score = 881 bits (477), Expect = 0.0
Identities = 848/1025 (83%), Gaps = 33/1025 (3%)
Strand=Plus/Plus
Query 1270 AAGACCGAGTGACTACTCTAGACCAAGTGATTACTACTCTAGACCGAGTGATTATTCACG 1329
||| || ||||| |||||||||||||| ||||| |||||||| ||||| ||||||| ||
Sbjct 1249 AAGGCCTAGTGATTACTCTAGACCAAGCGATTATTACTCTAGGCCGAGCAATTATTCTCG 1308
Query 1330 GCCAAGTGACT-TCTCAAGGT----CT--TCAGATGATGATAATGGTCTTGGGGATTCTC 1382
||| ||||| | | || ||| || || ||||||||||| || | ||||||||||
Sbjct 1309 GCCTAGTGA-TGTTTCCCGGTGGGGCTCCTCGGATGATGATAACGGCCCAGGGGATTCTC 1367
Query 1383 CAAGCAC-TGTCTTGTACTCACC-AGG---T-TC-T-G--CAGCA--AAC-GAGAATGGA 1429
| || || | ||||| | ||||| || | || | | | ||| || || || ||
Sbjct 1368 CCAGTACAT-TCTTGAATTCACCGGGGTCATGTCTTGGTTCTGCATCGACTGAAAACGGT 1426
Query 1430 TATAGGATCCCATGGAACTCTTCGCAGTATTGTTTAGTTGCTAGCAAACAAATGGTGGGT 1489
|| || ||| | |||||||| || ||||| ||||| || || || ||||| ||||| |||
Sbjct 1427 TACAGAATCTCGTGGAACTCATCTCAGTACTGTTTGGTCGCAAGTAAACAGATGGTTGGT 1486
Query 1490 GTCTTCTTAACCATTTGGGTGAAAAGTGAGCTAAGAGAACACGTCAAGAACATGAAAGTA 1549
|||| ||||| |||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 1487 ATCTTTTTAACAATTTGGGTGAAAAGCGAGTTACGAGAACACGTCAAGAACATGAAAGTA 1546
Query 1550 TCTTGTGTTGGCAGGGGACTGATGGGTTATCTTGGAAATAAGGGATCAATCTCAATAAGC 1609
||||||||||| || ||| | ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1547 TCTTGTGTTGGTAGAGGATTAATGGGTTATCTCGGAAATAAGGGATCAATCTCAATTAGT 1606
Query 1610 ATGTTGCTCCATCAAACAAGCTTT-TGCTTCGTTTGTACGCACTTGACTTCGGGACAAAA 1668
|||||||| ||||||||||| ||| |||||||| || || || ||||| |||||||||||
Sbjct 1607 ATGTTGCTTCATCAAACAAG-TTTCTGCTTCGTCTGCACTCATTTGACCTCGGGACAAAA 1665
Query 1669 AGAAGGCGATGAGCTAAAGAGAAACTCTGATGTCATGGAGATACTGAAGAAAACGAGGTT 1728
|| ||| |||||||||| ||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1666 AGGAGGTGATGAGCTAAGGAGAAACTCCGATGTCATGGAGATACTCAAGAAAACAAGGTT 1725
Query 1729 TCCGCGCGTTAAGAGTTCAG-AGGAAGAAAAGTCCCCTGAGAACATCCTTCAGCATGACC 1787
||| || || ||||||| | || | || |||||||||||||| |||||||||||||| |
Sbjct 1726 TCCTCGAGTCCAGAGTTCTGCAG-ACGAGAAGTCCCCTGAGAATATCCTTCAGCATGATC 1784
Query 1788 GGGTAATATGGCTTGGCGATCTAAACTACCGTATAGCACTGTCTTATCGATCTGCCAAAG 1847
||||||||||||| || ||||| |||||||| ||||| || ||||| ||||| || ||||
Sbjct 1785 GGGTAATATGGCTCGGGGATCTGAACTACCGGATAGCGCTCTCTTACCGATCCGCAAAAG 1844
Query 1848 CGCTTGTTGAGATGCAGAATTGGAGAGCTTTACTTGAAAATGACCAGTTAAGAATTGAGC 1907
|||| || |||||||| || ||||| || ||||| || || || |||||| | || ||||
Sbjct 1845 CGCTAGTCGAGATGCAAAACTGGAGGGCATTACTAGAGAACGATCAGTTACGGATAGAGC 1904
Query 1908 AAAAACGAGGCCATGTGTTTAAGGGATGGAATGAAGGAAAGATTTATTTCCCACCAACGT 1967
| |||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| |
Sbjct 1905 AGAAACGAGGGCATGTGTTTAAAGGATGGAACGAAGGAAAGATTTACTTCCCACCAACTT 1964
Query 1968 ACAAGTACTCGAGGAACTCAGATAGATACT-CTGGAGATGATTTGCATCCCAAGGAGAAA 2026
|||| ||||| | ||||| |||||||| | | |||| |||||||||||| |||||||||
Sbjct 1965 ACAAATACTCAAATAACTCGGATAGATA-TGCAGGAGGTGATTTGCATCCAAAGGAGAAA 2023
Query 2027 CGTCGCACTCCTGCTTGGTGTGATAGGATATTGTGGTTTGGTGAAGGACTGCATCAGTTA 2086
||||| |||||||||||||||||| ||||| | ||| ||| ||||| || |||||||||
Sbjct 2024 CGTCGTACTCCTGCTTGGTGTGATCGGATACTATGGCATGGAGAAGGTCTACATCAGTTA 2083
Query 2087 TCTTATGTAAGAGGAGAGTCACGGTTCTCTGATCATAGACCGGTCTACGGCATTTTCTGT 2146
|||||||||||||| ||||| ||||| || |||||||||||||| || ||||| ||| |
Sbjct 2084 TCTTATGTAAGAGGGGAGTCGCGGTTTTCAGATCATAGACCGGTTTATGGCATATTCAGC 2143
Query 2147 GCAGAGGTTGAGTCAGCTCATAATAGGAT-AAAGCGAACAACGAGTTACTCCGCTTCACG 2205
||||||||||||||| ||| || || || ||||||||| |||||| | ||| || ||||
Sbjct 2144 GCAGAGGTTGAGTCAAATCACAAGAG-ATTAAAGCGAACCACGAGTCATTCCACTGCACG 2202
Query 2206 GGTCCAAGCTGAAGAGCTCTTACCTTACTCCCGTGGATACACCGAGCTCAGC-TTCTTCT 2264
|||| |||||||||| |||||||||||| |||| |||||||||||||| | | || ||||
Sbjct 2203 GGTCGAAGCTGAAGAACTCTTACCTTACGCCCGCGGATACACCGAGCTAA-CATTTTTCT 2261
Query 2265 AGAAA 2269
| |||
Sbjct 2262 A-AAA 2265
Score = 658 bits (356), Expect = 0.0
Identities = 670/817 (82%), Gaps = 39/817 (5%)
Strand=Plus/Plus
Query 412 aatgagagaagagaaaTCCAAGACTAATAAGCTGGCATGGTCCAAGAAGATGGTAAGGAA 471
||||||||| || |||||||||| || ||| || ||||||||||||||||||| |||||
Sbjct 478 AATGAGAGACGATAAATCCAAGAAAAACAAGTTGTCATGGTCCAAGAAGATGGTGAGGAA 537
Query 472 ATGGTTCAATATCAAAAGCAAAACAGAGGAGTTTCAAGCAGATGATCCTTCTTCTGC-TG 530
||||||||| |||||||||||||| || ||||||||||||||| | || | || | |
Sbjct 538 ATGGTTCAACATCAAAAGCAAAACTGAAAAGTTTCAAGCAGATGTTTCTGATCCT-CAAG 596
Query 531 GAATTGAAGTAGAGCATAGAAGTAGCTTTTCAGCTGAGAAAGCACCTTCCACAATCAAGA 590
|| ||||||| ||||| |||| ||||| |||| |||| ||| || | |||||||||||
Sbjct 597 GAGTTGAAGTTGAGCACAGAAACAGCTTCTCAG-AGAGAGAGC-CC-TGCACAATCAAGA 653
Query 591 ATACCAAAACTGAGAAACTCAGTAAGAACTGGGAGCAGCAAGCTCGGCAAAGGAGAATGA 650
| | ||||||||| ||||||| |||||||||||||||||||||| | ||||||| |||||
Sbjct 654 AGAGCAAAACTGAAAAACTCAATAAGAACTGGGAGCAGCAAGCTAGACAAAGGAAAATGA 713
Query 651 ATTATGAGAATCCTAGGATCATTGATGTCCAAAACTACAGCATCTTTGTGGCTACATGGA 710
| ||||| ||||| || |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 714 ACTATGAAAATCCCAGAATCATTGATGTCCAAAACCACAGCATCTTTGTAGCTACATGGA 773
Query 711 ACGTAGCTGGACGCTCTCCTCCTTCAGACT-TAAACCTTGATGAGTGGCTTCATTCATCA 769
|||| ||||||||||||||||| ||| | ||||||| || || ||||||||||| ||
Sbjct 774 ACGTTGCTGGACGCTCTCCTCCGGAAGA-TCTAAACCTCGACGAATGGCTTCATTCCTCT 832
Query 770 GCTCCTGCTGATATCTATGTACTCGGATTCCAAGAGATTGTTCCTCTTAATGCTGGAAAT 829
|||||||| ||||| || || ||||| ||||||||||||||||||||||||||||| |||
Sbjct 833 GCTCCTGCAGATATATACGTTCTCGGGTTCCAAGAGATTGTTCCTCTTAATGCTGGTAAT 892
Query 830 GTCCTTGGAGCTGAAGACAATGGACCTGCTCAGAAATGGC-TCTCTCTTATCCGAAAAAC 888
|| |||||||||||||||||||| |||||| ||||||||| | || || ||| | |||||
Sbjct 893 GTTCTTGGAGCTGAAGACAATGGTCCTGCTAAGAAATGGCAT-TCCCTCATCAGGAAAAC 951
Query 889 GCTTAATAACCGACCAGGAACTAGCGGAACCAGCGGT-TATCACACGCCTTCCCCTATCC 947
|| ||||||| || || || ||| | | | | | ||| || || || ||||| |
Sbjct 952 ACTCAATAACCTCCCCGGGACAAGC--A----GTG-TCTGTCATACTCCGTCGCCTATTC 1004
Query 948 CTGTGCCTATGGCAGAGCTTGATGCTGATTTCTCTGGATCTACAAGGCAAAAGAACTCTA 1007
|||| || || |||||| ||||||||||||||||||||||| | |||||||||||| |
Sbjct 1005 CTGTCCCCATTGCAGAGATTGATGCTGATTTCTCTGGATCTTCGAGGCAAAAGAACGAGA 1064
Query 1008 CTTTCTTCCACAGACGGTCTTTTCAGACCCCGAG--TA-GTAC-ATGGAAT-GA-T--CC 1059
|||||||| ||||| ||||||| ||||||||||| || | | |||||| || | ||
Sbjct 1065 CTTTCTTCAACAGAAGGTCTTTCCAGACCCCGAGCGTATGGAGTATGGAAGAGAATGACC 1124
Query 1060 -TTCTAT-TCCTCAGCCA-GGTCTTGACCGTCGTTTCAGCGTCTGTGACCGTGTCTTCTT 1116
|||||| || |||||| || ||||| |||||||||||||| ||||| || || |||||
Sbjct 1125 CTTCTATCTCA-CAGCCACGG-CTTGAACGTCGTTTCAGCGTGTGTGATCGCGTATTCTT 1182
Query 1117 CAGCCACAGGCCAAGTGATTTCGACCCGAGTTTCCGTGGTAGCAGCAGCAGTCATAGGCC 1176
|| || || ||||||||||| |||||||| ||| | | | | || || || ||||
Sbjct 1183 TAGTCATAGACCAAGTGATTTTGACCCGAGCTTCAG-G-T-GTAGT--CA--CA--GGCC 1233
Query 1177 TAGTGATTACTCTAGAAGGCCTAGTGATTATTCTAGA 1213
|||||||||||| ||||||||||||||||| ||||||
Sbjct 1234 TAGTGATTACTCAAGAAGGCCTAGTGATTACTCTAGA 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101700954150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5