BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05490.1
Length=4600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470549 jgi|Araly1|470549|fgenesh2_kg.1__503__AT1G05490.1 6684 0.0
Ahg926202 jgi|Araly1|926202|scaffold_201763.1 117 8e-25
Ahg891256 jgi|Araly1|891256|Al_scaffold_0007_3242 117 8e-25
> Ahg470549 jgi|Araly1|470549|fgenesh2_kg.1__503__AT1G05490.1
Length=4546
Score = 6684 bits (3619), Expect = 0.0
Identities = 4292/4607 (93%), Gaps = 86/4607 (2%)
Strand=Plus/Plus
Query 19 tctctctgcccatctctctctGTTCCACTTTCTGAAACCAGTGAAAATCAAAAATTTCTC 78
||||||||||||||||||||||||||| |||||||||||| | |||| ||||||
Sbjct 1 TCTCTCTGCCCATCTCTCTCTGTTCCATTTTCTGAAACCACT--AAAT------TTTCTC 52
Query 79 TAAAAACTCAAGAACTTCATCATCTTCTTCTCAGACCCGTGTGAGTGAGTGAAAGATTCG 138
| |||| |||||||||||||||||||| || | | | ||||||||||||
Sbjct 53 TCAAAAGTCAAGAACTTCATCATCTTC--CT------C---TCA---AGTGAAAGATTCA 98
Query 139 ATTTTTTCTCATCTAAAGATCTTTGTGTTTGCTTTAATGGAGTGTATTGGGAAGAGAGTG 198
|||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 99 ATTTTTTCTCCTCTGAAGATCTTTGTGTTTGCTCTAATGGAGTGGATTGGGAAGAGAGTG 158
Query 199 AAGTCCCGGAGCTGGCAGCGTCTTCAGGCT-GTTAACAAGCGGAAGAAGATGGAGACTGT 257
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 159 AAGTCCCGGAGCTGGCAGCGTCTTCAGG-TGGTTAACAAGCGGAAGAAGATGGAGACTGT 217
Query 258 AGCTCCGGTGACATCTCCCCCAAAGAAACGACGGCAGAAGAAACCTAA--AAACTATGAC 315
|||||| ||||||||||| |||||||||||||||||||||||| | || | | |||
Sbjct 218 AGCTCCCGTGACATCTCCTCCAAAGAAACGACGGCAGAAGAAA-CGAACGGATC-CTGAT 275
Query 316 TCCGACATTGAGGACATCACACCAACTTGCAACGACAGTGTTCCTCCTCCTCAAGTCAGT 375
|| |||||| | |||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 276 TCTGACATTCAAGACATCACACCAACTTACAACGACCGTGTTCCTCCTCCTCAAGTCAGT 335
Query 376 AACATGTACTCTGTACCTAACAACTCTGTAAAAGAGAGTTTTTCTAGGATAATGAGAGAT 435
|||| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 336 AACAGGTACTCTGCACCTAACAACTCTGTAAAAGAGAGTTTTTCTTGGATAATCAGAGAT 395
Query 436 CTGAATGTGGAGAAGAAATCAGGTCCCAGCTCCTCTAGGTTAACAGATGGGTCTGAGCAG 495
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct 396 CTGAATGTGGAGAAGAAATCAGGTCCAAGCTCCTCTAGGTTAAGAGATGGGTCTGAACAG 455
Query 496 AACCCATGTCTGAAAGAGAGGTCTTTTAGGGTTAGTGATTTGGGCGTGGAGAAGAAATGT 555
||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||
Sbjct 456 AACCCATGTGTGAAAGAGAGTTCTTTTAGGGTTAGTGATCTGGGTGTGGAGAAGAAATGT 515
Query 556 TCCCCTGAGATTACAGATTTGGATGTTGGGATACCTGTTCCGAGATTTTCTAAGTTAAAG 615
||||| | || || || ||||| |||||||| |||||||||||||||
Sbjct 516 TCCCC------T---GA----GA--TT---ATACCAGTTCCGAGCTTTTCTAAGTTAAAG 557
Query 616 GATGTGTCTGAACAGAAGAACACATGTCTG-ATGCAGAAGAGTTCTCCTGAGATTGCTGA 674
|||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||| ||||
Sbjct 558 GATGGGTCTGAACAGAAGAACACATGTCTGAATG-AGAAGACTTCTCCTGAGATTACTGA 616
Query 675 TTTGGATCTTGTAATATCAGTTCCGAGCTCTTCTGTGTTAAAAGATGTGTCAGAAGAAAT 734
||||||| |||||||||| ||||| ||||||| ||| ||||||||| |||| |||||||
Sbjct 617 TTTGGATGTTGTAATATCCGTTCCCAGCTCTTATGTCTTAAAAGATATGTCTGAAGAAAA 676
Query 735 CAGATTTTTGAAGGACAAGTGTTCCCCTGAGATTAGAGGTTTGGTT-TTGGAAAAATCAG 793
||||||||||||||| |||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 677 CAGATTTTTGAAGGAGAAGTGTTCTCCTGAGATTAGAGGTTTGGTTGTT-GAAAAATCAG 735
Query 794 TCCCTGGCGAAATAGAGATTCTTTCAGATTCTGAGTCTGAAACTGAAGCTAGAAGAAGAG 853
||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 736 TCCTTCGTGAAATAGAGATTCTTTCAGATTCTGAGTCTGAAATTGAAGCTAGAAGAAGAG 795
Query 854 CTTCAGCCAAGAAGAAGCTATTTGAAGAAAGTAGCAGAATTGTAGAGTCTATCAGTGATG 913
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 796 CTTCAGCCAAGAAGAAGCTATTTGAGGACAGCAGCAGAATTGTAGAGTCTATCAGTGATG 855
Query 914 GTGAAGATAGCTCAAGTGAAACCGATGAAGAGGAAGAAGAAAATCAAGATAGTGAAGATA 973
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GCGAAGATAGCACAAGTGAAACCGATGAAGAGGAAGAAGAAAATCAAGATAGTGAAGATA 915
Query 974 ATAACACCAAAGATAATGTAACGGTGGAGTCTTTGTCTTCTGAGGatccatcttcatcat 1033
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 ATAACACCAAAGATAATATAACGGTGGAGTCTTTGTCTTCTGAGGATCCATCTTCATCAT 975
Query 1034 catcatcgtcatcatcgtcgtcttcatcTTCCTCTTCCTCCTCGAGTGACGATG-AATCA 1092
||||| |||||||| || || |||||||||||||| |||||||||||||||| ||| |
Sbjct 976 CATCA---TCATCATCATCATCATCATCTTCCTCTTCTTCCTCGAGTGACGATGAAAT-A 1031
Query 1093 TATGTAAAGGAGGTAGTTGGAGATAATAGAGATGATGATGACTTGAGAAAGGCCAGTTCA 1152
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1032 TATTTAAAGGAGGTAGTTGGAGATAATACAGATGATGATGACTTGAGAAAGGCCAGTTCA 1091
Query 1153 CCAATCAAGAGAGTTTCTTTAGTGGAAAGGAAGGCTTTGGTAAGGTATAAGAGGTCTGGT 1212
||||||| || ||| ||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1092 CCAATCAGGAAAGTCTCTTTAGCGGAAAGGAAGCCTTTGGTAAGGTATAAGAGGTCTGGT 1151
Query 1213 TCTAGCTTAACCAAGCCTA-GAGAAAGAGACAACAAGATTCAGAAACTAAACCACCGAGA 1271
||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||
Sbjct 1152 TCTAGCTTAACCAAGCCTATAAAAAAG-GACAAGAAGATTCAGAAACTAAACCACCGAGA 1210
Query 1272 AGAAGaaaaaaaaGAACGACAAAGAGAAGTTGTAAGAGTAGTAACAAAGCAGCCGAGCAA 1331
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1211 AGAAGAAGAAAAAGAACGACAAGGAGAAGTTGTAAGAGTAGTAACAAAGCAGCCGAGCAA 1270
Query 1332 TGTTGTGTACACTTGTGCTCACTGTGGCAAAGAGAACACAGGAAACCCTGAATCACACAG 1391
|||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||
Sbjct 1271 TGTTGTGTTCACTTGTGCTCATTGTGGCAAAGAGAACACAGGAATCCCTGAATCTCACAG 1330
Query 1392 CTCTTTCATTAGACCACATTCAATAAGAGATGAAATTGAGGATGTGAACAACTTTGCTTC 1451
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1331 CTCTTTCATTAGACCACATTCATTAAGAGATGAAATTGAGGATGTGAACAACTTTGCTTC 1390
Query 1452 TACTAATGTATCAAAGTATGAAGATTCTGTTTCCATCAACTCTGGGAAAACAACTGGAGC 1511
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1391 TACTAATGTATCAAAGTATGAAGATTCTGTTTCCATCAACTCTGGGAAGACAACTGGAAA 1450
Query 1512 TCCATCCAGACCTGAAGTGGAGAATCCAGAGACAGGAAAAGAATTGAACACACCTGAGAA 1571
||||||||||||||||||||||||| ||||||||||||||||| | || | | ||||||
Sbjct 1451 TCCATCCAGACCTGAAGTGGAGAATGCAGAGACAGGAAAAGAAGTAAAAAAATTTGAGAA 1510
Query 1572 GCCATCCATATCCAGACCTGAAATTTTCACTACAGAGAAAGCGATAGATGTACAAGTACC 1631
||||||||||||||||||||||| |||||||||||||||||| | ||| |||||||||||
Sbjct 1511 GCCATCCATATCCAGACCTGAAACTTTCACTACAGAGAAAGCAAAAGAGGTACAAGTACC 1570
Query 1632 TGAAGAGCCATCAAGACCTGAAATTTACAGTTCAGAGAAAGCAAAAGAGGTACAAGCACC 1691
|||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1571 TGAAAAGCCATCAACACCTGAAATTTTCGGTTCAGAGAAAGCAAAAGAGGTACAAGCACC 1630
Query 1692 TGAAATGCCATCAAGACCTGAAG-TTTTCAGTTCAGAGAAAGCAAAAGAAATACAAGTAC 1750
|||||||||||||||||||| || ||||||||||||||||| ||||||| ||||| ||
Sbjct 1631 TGAAATGCCATCAAGACCTG-AGATTTTCAGTTCAGAGAAAACAAAAGAGCCACAAGCAC 1689
Query 1751 CTGAAATGCCATCAATACCTGA-A-ATCCAGAATTCAGAGAAAGCAAAAGAGGTCCAAGC 1808
|||||||||| |||| |||||| | | ||| |||||||||||||||||||||||||||
Sbjct 1690 CTGAAATGCCTTCAAGACCTGAGATTTTCAG--TTCAGAGAAAGCAAAAGAGGTCCAAGC 1747
Query 1809 CAACAACAGGATGGGTTTGACGACA-C--C---TGCAGTTGCAGAGGGGTTAAATAAGTC 1862
||| ||||| | ||||||| |||| | | ||||||||| |||||||||||||||||
Sbjct 1748 CAATAACAGCTTTGGTTTGATGACACCTACAGTTGCAGTTGCGGAGGGGTTAAATAAGTC 1807
Query 1863 TGTTGTGACTAATGAACATATTGAAGATGACTCTGATTCTTCTATTAGCTCTGGAGATGG 1922
||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||
Sbjct 1808 TGTTGTGACTAATGAACATGTTGATGATGACTCTGACTCTTCTATTAGCTCTGCAGATGG 1867
Query 1923 ATATGAATCTGATCCTACTCTAAAAGACAAAGAGGTCAAGATTAATAACCACTCGGATTG 1982
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1868 ATATGAATCTGATCCTACTCTAAAAGACAAAGAGGTCAAGGTTAATAACAACTCGGATTG 1927
Query 1983 GAGAAT-ATTGAATGGAAACAATAAAGAAGTTGATCTATTCAGGCTTCTTGTGAACTCTG 2041
|||||| | ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1928 GAGAATGA-TGAATGGAAACCATAAAGAAGTTGATCTATTCAGGCTTCTTGTAAACTCTG 1986
Query 2042 TTTGGGAGAAAGGTCAATTAGGCGA---AGAGGATGAAGCAGACGAACTAGTTTCTTCAG 2098
|||||||||||||||||||||| || |||||| ||||||||||||||| |||||| |
Sbjct 1987 TTTGGGAGAAAGGTCAATTAGGTGAGGGAGAGGAAGAAGCAGACGAACTAATTTCTTTAC 2046
Query 2099 CTGAAGACCAATCTCAAGAACAAGCAAGGGAAGATCACAGAAAATATGATGATGCTGGAC 2158
||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 2047 CTGAAGACCAATCTCAAGAACAAGCAAAGGAAGATCAAAGAAAATATGATGATGATGGAC 2106
Query 2159 TTCTAATCATTAGGCCACCACCATTGATAGAGAAATTTGGTGTGGAGGAGCCTCAGTCAC 2218
||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 2107 TTCTAATCATTAGGCCACCACCATTGATAGAGAGATTTGGTGTGGAGGAGCCTGAATCAC 2166
Query 2219 CACCTGTGGTTTCTGAGATCGATTCAGAGGAAGATAGGCTGTGGGAAGAACTAGCATTTT 2278
||||||||||||||||| | |||||||||||||| | | |||||||||||||||||||||
Sbjct 2167 CACCTGTGGTTTCTGAGTTAGATTCAGAGGAAGAGACGTTGTGGGAAGAACTAGCATTTT 2226
Query 2279 TCACTAAATCTAACGACATCGGCGGCAACGAGCTTTTTTCAAATGTAGAGAAAAATATAT 2338
||| ||||||||| || |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2227 TCAGTAAATCTAATGAAATCGGCGGCAACGAGCTTCCTTCAAATGTAGAGAAAGATATAT 2286
Query 2339 CAGCTAATGAAACTCCAGCAGCACAATGTAAAAAAGGGAAACACGATCTATGTATTGATC 2398
|| |||| |||||||||||||||||||||||||||||||| ||||| || ||| ||||||
Sbjct 2287 CAACTAAAGAAACTCCAGCAGCACAATGTAAAAAAGGGAATCACGAGCTGTGTCTTGATC 2346
Query 2399 TTGAGGTTGGTTTGAAGTGTATGCACTGTGGCTTCGTGGAGAGAGAGATCCGAAGCATGG 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2347 TTGAGGTTGGTTTGAAGTGTATGCACTGTGGCTTCGTGGAGAGAGAGATCCGAAGCATGG 2406
Query 2459 ATGTATCTGAGTGGGGAGAGAAGACTACAAGGGAAAGGAGAAAATTTGATAGATTTGAAG 2518
|||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 2407 ATGTATCTGAGTGGGGAGAGAAGATTACACGGGAAAGGAGAAAAATTGATAGATTTGAAG 2466
Query 2519 AGGAAGAAGGCAGCAGCTTCATTGGGAAACTTGGGTTTGATGCTCCTAACAACAGCTTAA 2578
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2467 AGGAAGAAGGCAGCAGCTTCATTGGGAAACTTGGTTTTGAACCTCCTAACAACAGCTTAA 2526
Query 2579 ATGAGGGATGTGTTTCTTCTGAAGGAACTGTTTGGGATAAGATCCCAGGGGTCAAATCTC 2638
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2527 ATGAGGGATGTATTTCTTCTGAAGGAACTGTTTGGGATAAGATCCCAGGGGTCAAATCTC 2586
Query 2639 AAATGTATCCTCACCAGCAAGAGGGTTTTGAGTTTATCTGGAAGAACTTAGCCGGTACAA 2698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2587 AAATGTATCCTCACCAGCAAGAGGGTTTTGAGTTTATCTGGAAGAACTTAGCCGGTACAA 2646
Query 2699 TCATGTTGAACGAGCTCAAGGACTTTGAGAACAGTGATGAGACCGGAGGATGCATCATGT 2758
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2647 TCTTGTTGAACGAGCTCAAGGACTTTGAGAACAGCGATGAGACCGGAGGATGCATCATGT 2706
Query 2759 CACATGCTCCCGGGACCGGAAAAACTCGTCTGACCATCATTTTCCTGCAAGCCTATCTTC 2818
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2707 CACACGCTCCCGGGACAGGAAAAACTCGCCTGACCATCATTTTCCTGCAAGCCTATCTTC 2766
Query 2819 AATGCTTCCCAGATTGCAAACCAGTGATCATTGCTCCTGCGAGCTTGCTTCTCACATGGG 2878
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2767 AATGCTTCCCAGATTGCAAACCAGTGATCATTGCTCCTGCAAGCTTGCTTCTCACATGGG 2826
Query 2879 CAGAGGAGTTCAAGAAATGGAACATAAGCATTCCCTTTCATAATCTCAGCAGTTTGGACT 2938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2827 CAGAGGAGTTCAAGAAATGGAACATAAGCATTCCCTTTCATAATCTCAGCAGTTTGGACT 2886
Query 2939 TTACTGGGAAAGAGAACTCGGCGGCGCTGGGACTTTTGATGCAGAAGAATGCCACTGCAA 2998
||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2887 TTACTGGGAAAGAGAGCTCCGCGGCACTGGGGCTTTTGATGCAGAAGAATGCCACTGCAA 2946
Query 2999 GAAGCAATAATGAGATAAGGATGGTGAAAATATACTCTTGGATAAAATCGAAGAGCATAC 3058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2947 GAAGCAATAATGAGATAAGGATGGTGAAAATATACTCTTGGATAAAATCGAAGAGCATAC 3006
Query 3059 TCGGGATCAGCTACAATCTGTATGAGAAGCTTGCAGGAGTTAAGGACGAGGACAAAAAGA 3118
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 3007 TCGGGATCAGCTACAACCTCTATGAGAAGCTTGCAGGAGTTAAAGACGAGGACAAAAAGA 3066
Query 3119 CAAAGATGGTGAGAGAAGTGAAGCCAGACAAAGAATTAGATGATATCAGAGAGATACTTA 3178
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3067 CAAAGACAGTGAGAGAAGTGAAACCAGACAAAGAATTAGATGATATCAGAGAGATACTTA 3126
Query 3179 TGGGAAGGCCTGGACTTCTTGTTCTTGACGAGGCACACACACCTCGGAACCAGAGAAGTT 3238
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3127 TGGGAAGGCCTGGACTTCTTGTTCTTGACGAGGCACACACGCCTCGGAACCAGAGAAGTT 3186
Query 3239 GTATATGGAAAACACTATCCAAAGTGGAAACACAGAAACGAATCTTGCTCTCTGGAACTC 3298
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 3187 GTATATGGAAAACACTATCCAAAGTGGAAACACAGAAACGTATCTTGCTTTCTGGAACTC 3246
Query 3299 CTTTCCAGAACAACTTCCTGGAGCTGTGCAATGTTTTGGGACTCGCAAGACCTAAATATC 3358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3247 CTTTCCAGAACAACTTCCAGGAGCTGTGCAATGTTTTGGGACTCGCAAGACCTAAATATC 3306
Query 3359 TGGAGAGGCTCACGTCCACACTCAAGAAGAGTGGGATGACTGTAACGAAGAGAGGGaaaa 3418
|||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 3307 TGGAAAGGCTCACATCCACACTCAAGAAGAGTGGGATGACTGTAACAAAGAGA-GGAAAA 3365
Query 3419 aaa-aTTTGGGGAATGAAATCAACAACCGTGGGATTGAAGAGCTGAAGGCTGTTATGCTT 3477
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3366 AAAGCTTTGGGGAATGAAATCAACAACCGTGGGATCGAAGAGCTGAAGGCTGTTATGCTT 3425
Query 3478 CCATTTGTGCATGTCCATAAAGGAAGCATTCTTCAAAGTAGCCTCCCTGGTTTGAGAGAA 3537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3426 CCATTTGTGCATGTCCATAAAGGAAGCATTCTTCAAAGTAGCCTCCCTGGTTTGAGAGAA 3485
Query 3538 TGTGTTGTGGTGTTAAACCCACCTGAGCTGCAGAGGAGAGTCCTAGAATCCATTGAAGTC 3597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3486 TGTGTTGTGGTGTTAAACCCACCTGAGCTGCAGAGGAGAGTCCTAGAATCCATTGAAGTC 3545
Query 3598 ACTCACAACCGGAAAACAAAAAACGTGTTTGAAACAGAACACAAGCTGTCTTTGGTCTCA 3657
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3546 ACTCACAACCGGAAAACAAAAAACGTGTTTGAAACAGAACACAAGCTGTCTCTGGTCTCA 3605
Query 3658 GTCCATCCTTCTCTAGTCTCTCGCTGCAAAATTTCTGAGAAGGAACGTTTGTCCATCGAC 3717
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3606 GTCCATCCTTCTCTAGTCTCTCGCTGCAAACTTTCTGAGAAGGAACGTTTGTCCATCGAT 3665
Query 3718 GAGGCTCTGCTTGCACAGCTTAAGAAGGTAAGACTCGATCCAAATCAAAGCGTGAAAACA 3777
|||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 3666 GAGGCTTTGCTTGCACAGCTTAAGAAGGTAAGACTTGATCCAAACCAAAGTGTGAAAACG 3725
Query 3778 AGATTCCTCATGGAGTTTGTCGAGTTATGCGAGGTGATAAAGGAGAAAGTGTTGGTCTTT 3837
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3726 AGATTCCTCATGGAGTTCGTCGAGTTATGCGAGGTGATAAAGGAGAAAGTGTTGGTCTTC 3785
Query 3838 AGCCAATACATAGACCCATTGAAACTGATAATGAAACATCTGGTCTCTCGTTTCAAGTGG 3897
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3786 AGCCAATACATCGACCCATTGAAACTGATCATGAAACATCTGGTCTCTCGTTTCAAGTGG 3845
Query 3898 AATCCAGGGGAGGAAGTGTTGTACATGCACGGCAAACTCGAGCAGAAACAAAGACAAACA 3957
||||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||
Sbjct 3846 AATCCAGGGCAGGAAGTGCTGTACATGCATGGCAAACTCGAGCAAAAACAAAGACAAACC 3905
Query 3958 TTAATCAACGAATTCAATGATCCAAAATCCAAGGCCAAAGTGTTCTTAGCTTCAACAAAA 4017
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3906 TTGATCAACGAATTCAATGATCCAAAATCCAAGGCCAAAGTGTTCTTAGCTTCAACAAAA 3965
Query 4018 GCCTGCTCTGAAGGGATCAGTCTGGTAGGAGCATCAAGGGTGATTCTTTTGGATGTTGTG 4077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3966 GCCTGCTCTGAAGGGATCAGTCTGGTAGGAGCATCAAGGGTGATTCTTTTGGATGTTGTG 4025
Query 4078 TGGAATCCTGCAGTCGAAAGACAAGCTATAAGCCGTGCTTACAGAATCGGGCAGAAGCGG 4137
|||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 4026 TGGAATCCGGCAGTGGAAAGACAAGCTATAAGCCGTGCTTACAGAATCGGACAGCAGCGG 4085
Query 4138 ATTGTTTACACATACCACTTGGTTGCAAAAGGGACTCCTGAGGGACCAAAGTACTGTAAG 4197
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 4086 ATTGTTTACACATATCACTTGGTTGCAAAAGGAACTCCTGAGGGACCAAAATACTGTAAG 4145
Query 4198 CAAGCACAAAAGGATAGAATCTCAGAGCTTGTGTTTGCATGTTCTTCCAGACATGACAAA 4257
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 4146 CAAGCACAAAAGGATAGGATCTCAGAGCTTGTGTTTGCATGCTCTTCAAGACATGACAAA 4205
Query 4258 GGAAAGGAAAAGATTGCTGAAGCTGTGACAGAGGATAAAGTGTTGGACACTATGGTGGAG 4317
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 4206 GGAAAGGAAAAGATTGCTGAAGTTGTGACAGAGGATAAAGTGTTGGACACTATGGTGCAG 4265
Query 4318 CATTCGAAGCTTGGGGATATGTTTGACAATCTTATCGTGCAACCAAAGGAAGCAGATTTA 4377
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 4266 CATTCGAAGCTTGGGGATATGTTTGACAATCTCATCGTCCAACCAAAGGAAGCAGATTTA 4325
Query 4378 GTTGAAGGTTTCAGCATACTTATGCCATGACTCATCACCAAACTCTTGGCTTCAT-C-TC 4435
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| | ||
Sbjct 4326 GTTGAAGGTTTCAGCATTCTTATGCCATGAGTCATCACAAAACTCTTGGCTTCATTCATC 4385
Query 4436 TTCTTCCCTATA-TATCTCATATGCCATTTCATCTTTCCAAGACTTGTGTTTTGCTTTTG 4494
| |||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 4386 T-CTTCCCTATAATATCT--TATGCCATTTCATGTTTCCAAGACTTGTGTTTTGCATTTG 4442
Query 4495 TGTGATCCTTTAGGGTATCTTCTTTCTCAGAAAAAACCTTGACTTTTGTTTGGGTTTACT 4554
| ||||||||| ||| | |||||||||| |||||| ||| | ||||||| ||| ||| |
Sbjct 4443 TATGATCCTTTTGGGCAACTTCTTTCTCGGAAAAA-CCTAGGCTTTTGTCTGGATTT-CA 4500
Query 4555 TT-TGTCTACTATGAACTCTTAACTTATCTAGCAAAATGTTTCATGT 4600
|| ||||| ||||||||||| ||||||| ||||||||||||||||||
Sbjct 4501 TTATGTCTGCTATGAACTCT-AACTTATATAGCAAAATGTTTCATGT 4546
> Ahg926202 jgi|Araly1|926202|scaffold_201763.1
Length=915
Score = 117 bits (63), Expect = 8e-25
Identities = 79/86 (92%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 1715 TTTTCAGTTCAGAGAAAGCAAAAGAAATACAAGTACCTGAAATGCCATCAATACCTGAAA 1774
|||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||
Sbjct 792 TTTTCAGTTCAGAGAAAGCAAAAG----ACAAGCACCTAAAATGCCATCAAGACCTGAAA 847
Query 1775 TCCAGAATTCAGAGAAAGCAAAAGAG 1800
||||||||||||||||||||||||||
Sbjct 848 TCCAGAATTCAGAGAAAGCAAAAGAG 873
> Ahg891256 jgi|Araly1|891256|Al_scaffold_0007_3242
Length=696
Score = 117 bits (63), Expect = 8e-25
Identities = 79/86 (92%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 1726 GAGAAAGCAAAAGAAATACAAGTACCTGAAATGCCATCAATACCTGAAATCCAGAATTCA 1785
||||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||
Sbjct 547 GAGAAAGCAAAAG----ACAAGCACCTAAAATGCCATCAAGACCTGAAATCCAGAATTCA 602
Query 1786 GAGAAAGCAAAAGAGGTCCAAGCCAA 1811
||||||||||||||||||||||||||
Sbjct 603 GAGAAAGCAAAAGAGGTCCAAGCCAA 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 174037281329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5