BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05510.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470551 jgi|Araly1|470551|fgenesh2_kg.1__505__AT1G05510.1 1315 0.0
Ahg949381 jgi|Araly1|949381|scaffold_801268.1 191 9e-48
> Ahg470551 jgi|Araly1|470551|fgenesh2_kg.1__505__AT1G05510.1
Length=890
Score = 1315 bits (712), Expect = 0.0
Identities = 792/830 (95%), Gaps = 7/830 (1%)
Strand=Plus/Plus
Query 49 TTGCAGAGAAAAGAGAA-T----TAATTGATTGGTGTAATGGAGAAGGCAGTTCATTTAT 103
||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||
Sbjct 26 TTGCAGAGAAAAGAGAATTACAGTAATTGATTGGTGTAATGGAGAAGACAGTTCATTTAT 85
Query 104 CCACCAAAAATGGACCCAAGGTTCCAGGAGAGCCAACGAAGACCGGAACCTCCATGGTTG 163
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 CTACAAAAAATGGACCCAAGGTTCCAGGAGAGCCAACGAAGACCGGAACCTCCATGGTTG 145
Query 164 ACACGGCAGCTTCAGCCGTACAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCT 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 ACACGGCAGCTTCAGCCGTACAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCT 205
Query 224 GCGCGTTTCATTTCTATGCATATGACATGACCCGACAAGTGGAGGCACACCATTTCTGTG 283
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 206 GCGCGTTTCATTTTTATGCATATGACATGACCCGACAAGTGGAGGCACACCATTTTTGCG 265
Query 284 GTCACATCAACGAAGACATGCGCCAGTGTCTGATCTACGACGGTCCTGATGCCAACGCTC 343
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 266 GTCACATCAACGAAGACATGCGTCAGTGTCTGATCTACGACGGTCCTGATGCCAACGCTC 325
Query 344 GTCTGATCGGTCTGGAGTACATTGTGACAGAGAAGCTCTTTATGACATTGCCTGACGATG 403
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 326 GTCTGATCGGTTTGGAGTACATTGTGACAGAGAAGCTCTTTATGACATTGCCTGATGATG 385
Query 404 AGAAGAAGCTTTGGCACACTCACGAGTGGGAAGTTAAAGGAGGCTTCTTGTTCATGCCCG 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 AGAAGAAGCTTTGGCACACTCACGAGTGGGAAGTTAAAGGAGGCTTCTTGTTCATGCCCG 445
Query 464 GTGTTCCCGAAGCTATTCAACGGCAAGATCTCGAAAAAGTCGCCAAGACTTATGGGAAAG 523
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 446 GTGTTCCAGAAGCTATTCAACGCCAAGATCTCGAAAAAGTCGCCAAGACTTATGGGAAAG 505
Query 524 TTTACCATTTCTGGCAAGTCGATTTGGGGCATCAGCTTCCCATTGGCTTGCCTAATATCA 583
||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 506 TTTACCATTTCTGGCAAGTCGATAAGGGGCATGACCTTCCCATTGGCTTGCCTAATATCA 565
Query 584 TGATGGCTGTTACTCGAGACGGACAACTTTATCCGGAAATGATCAAGGAGACGGAAAAGC 643
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 566 TGATGGCCGTTACTCGAGACGGTCAACTTTATCCGGAAATGATCAAGGAGACGGAAAAGC 625
Query 644 AATTTGGAGTATCGATAGACAAGGAGCGAGAGTCAAGGGCTTATATGAAGGGTCCAGACC 703
| |||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||
Sbjct 626 AGTTTGGAGTATCGATGGAAAAGGAAAGAGAGTCAAGGGCTTATATGAAGGGACCAGACC 685
Query 704 ATGGGATCCATCCCTTGGCAAATGGAGGAGGCAAAGGCCTGAAGTTGGAGTTGCGAGAGG 763
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 686 ATGGGATCCATCCCTTGGCAAATGGAGGAGGCAAAGGCCTCAAGCTGGAGGTGCGAGAGG 745
Query 764 TTGACATAAAGCCGGTTGAGTCCGTTCCAAGAGTCTTCGTTTAAGTTATACTTAAATAGA 823
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 746 TTGACATAAAGCCGGTCGAGTCCGTTCCAAGAGTCTTCGTTTAAGTTACAGTTAAATAGA 805
Query 824 CAACTTAAGAA--GAATAAATAAATAAGCGATCGAGCTTTTCTTTTGTAT 871
||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 806 CAACTTAAGAAAAGAATAAATAAAGAAGCGATCGAGCTTTGCTTTTGTAT 855
> Ahg949381 jgi|Araly1|949381|scaffold_801268.1
Length=203
Score = 191 bits (103), Expect = 9e-48
Identities = 105/106 (99%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 124 GTTCCAGGAGAGCCAACGAAGACCGGAACCTCCATGGTTGACACGGCAGCTTCAGCCGTA 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 34 GTTCCAGGAGAGCCAACGAAGACCGAAACCTCCATGGTTGACACGGCAGCTTCAGCCGTA 93
Query 184 CAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCTGCGCGT 229
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 CAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCTGCGCGT 139
Score = 63.9 bits (34), Expect = 2e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 61 GAGAATTAATTGATTGGTGTAATGGAGAAGGCAGTTC 97
|||||||||||||||||||||||||||||| ||||||
Sbjct 1 GAGAATTAATTGATTGGTGTAATGGAGAAGACAGTTC 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5