BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05530.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919252 jgi|Araly1|919252|scaffold_100533.1 2058 0.0
Ahg919257 jgi|Araly1|919257|scaffold_100538.1 1491 0.0
> Ahg919252 jgi|Araly1|919252|scaffold_100533.1
Length=1421
Score = 2058 bits (1114), Expect = 0.0
Identities = 1294/1379 (94%), Gaps = 20/1379 (1%)
Strand=Plus/Plus
Query 1 ATGGCGCAACCGCATTTTCTACTGGTAACGTTTCCGGCGCAAGGTCACGTGAACCCATCT 60
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 21 ATGGCGCTACCGCATTTTCTACTGGTAACGTTTCCGGCTCAAGGTCACGTGAACCCATCT 80
Query 61 CTCCGTTTTGCTCGTCGGCTCATCAAAACAACTGGCG-CACGTGTAACTTTCGCCACGTG 119
|| |||||||||||||||||||||||||| || || | ||||||| ||||| ||||||||
Sbjct 81 CTTCGTTTTGCTCGTCGGCTCATCAAAACCACCGG-GACACGTGTCACTTTTGCCACGTG 139
Query 120 TCTCTCTGTCATTC-ACCGCTCTATGATCCCAAACCACAACAACGTCGAA--A-AT-CTC 174
|||||||| || || ||||||||||||||||| |||||||||||||| || | | |||
Sbjct 140 TCTCTCTGCCA-TCAACCGCTCTATGATCCCAGACCACAACAACGTC-AACGATCTGCTC 197
Query 175 TCTTTCCTTACTTTCTCCGACGGATTCGACGACGGAGTCATCTCCAACACCGACGACGTC 234
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 198 TCTTTCCTTACTTTCTCCGACGGATTCGACGACGGAGTCATATCCAACACCGACGACGTC 257
Query 235 CAAAACCGGTTGGT-ACACTTCGAACGTAATGGCGATAAAGCTCTATCGGATTTCATCGA 293
|||||||||||| | | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 258 CAAAACCGGTTGCTGA-ACTTCGAACGTAACGGCGATAAAGCTCTATCGGATTTCATCGA 316
Query 294 AGCTAATC-AGAATGGTGACTCTCCCGTAAGTTGCTTGATCTACACGATTCTTCCCAACT 352
|||||||| | ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 317 AGCTAATCTA-AATGGTGACTCTCCCGTGACTTGCTTGATCTACACGATTCTTCCCAACT 375
Query 353 GGGTTCCAAAAGTGGCGCGTAGATTTCATC-TTCCCTCTGTTCATCTCTGGATCCAACCA 411
||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 376 GGGCTCCAAAAGTGGCGCGTAGATTTCA-CATTCCCTCTGTTCTTCTCTGGATCCAACCA 434
Query 412 GCCTTCGCTTTCGACATTTATTACAATTACTCTACAGGAAACAACTCCGTTTTCGAGTTC 471
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 435 GCCTTCGTTTTCGACATTTATTACAATTACTCTACAGGAAACAACTCTGTTTTCGAGTTC 494
Query 472 CCGAATCTACCTTCTCTCGAAATCCGCGATCTGCCTTCTTTCCTCTCACCTTCCAACACG 531
|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 495 CCGAATCTTCCTTCTCTCGCAATCCGCGATCTTCCTTCTTTCCTCTCACCTTCCAACACG 554
Query 532 AACAAAGCCGCACAAGCAGTATATCAAGAACTGATGGATTTTCTCAAAGAAGAATCTAAC 591
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 555 AACAAAGCCGCACAAGCAGTATATCTAGAACTGATGGAGTTTCTCAAAGAAGAATCTAAC 614
Query 592 CCGAAAATTCTCGTCAACACATTCGATTCGCTGGAGCCAGAGTTCTTAACAGCTATTCCG 651
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 615 CCGAAAATTCTCGTCAACACATTCGATTCGCTGGAGCCAGACTTCTTAACAGCTATTCCG 674
Query 652 AATATAGAAATGGTGGCAGTTGGTCCTTTACTTCCTGCGGAGATTTTCACTGGAAGCGAA 711
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AATGTAGAAATGGTGGCAGTTGGTCCTTTACTTCCTGCGGAGATTTTCACTGGAAGCGAA 734
Query 712 TCAGGTAAAGATTTATCAAGAGATCATCAAAGTAGTAGTTATACACTTTGGTTAGACTCG 771
|||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||
Sbjct 735 TCAGGTAAAGATTTATCAAGAGATCA--AA-GTAGTAGTTATAAACTTTGGTTAGACTCG 791
Query 772 AAAACAGAGTCCTCTGTTATTTATGTTTCTTTTGGAACAATGGTTGAGTTGTCGAAGAAA 831
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 792 AAAACAGAGTCCTCTGTTATTTATGTTTCTTTTGGAACAATGGTTGAGTTGTCCAAGAAA 851
Query 832 CAGATAGAGGAACTAGCGAGAGCACTCATAGAAGGGGGAAGACCGTTCTTGTGGGTTATA 891
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 852 CAAATAGAGGAACTAGCGAGAGCACTCATAGAAGGGAAAAGACCGTTCTTGTGGGTTATA 911
Query 892 ACTGATAAACTCAACagagaagcgaaaatagaaggagaagaagagacagagattgagaag 951
|| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 912 ACCAATAAACTCAACAGAGAAGCAAAAATCGAAGGAGAAGAAGAGACAGAGATTGAAAAG 971
Query 952 aTAGCTGGTTTTAGACACGAGCTTGAAGAGGTTGGGATGATTGTCTCGTGGTGTTCGCAG 1011
||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 972 ATAGCAAGTTTCAGACATGAGCTTGAAGAGGTTGGGATGATTGTGTCGTGGTGTTCTCAG 1031
Query 1012 ATAGAGGTTTTGAGACACCGAGCCATAGGTTGTTTTTTGACTCATTGTGGGTGGAGCTCA 1071
||||||||||| || ||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 1032 ATAGAGGTTTTAAGTCACCGAGCCGTAAGTTGTTTTGTGACTCATTGTGGGTGGAGCTCA 1091
Query 1072 TCACTGGAGAGTTTGGTTCTCGGCGTTCCAGTGGTGGCGTTTCCGATGTGGTCGGATCAG 1131
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TCGCTGGAGAGTTTGGTTCTCGGCGTTCCAGTGGTGGCGTTTCCGATGTGGTCGGATCAA 1151
Query 1132 CCAGCAAATGCGAAGCTTTTGGAAGAAATATGGAAGACAGGTGTGAGGGTGAGAGAGAAC 1191
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1152 CCAGCGAATGCGAAGCTTTTGGAAAAAATATGGAAGACAGGTGTGAGGGTGAGAGAGAAC 1211
Query 1192 TCGGAAGGTTTAGTAGAGAGAGGAGAGATAATGCGGTGTTTGGAAGCAGTGATGGAGGCG 1251
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1212 TCGGAAGGTTTAGTGGAGAGAGGAGAGATAAAGCGGTGTTTGGAAGCAGTGATGGAGGAG 1271
Query 1252 AAATCGGTGGAGCTGAGGGAAAACGCAGAGAAATGGAAGCGTTTAGCGACTGAAGCGGGT 1311
|| || | ||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1272 AAGTCTGAGGAGCTGAGGGAAAACGCAGAGAAATGGAAGCGTTTAGCGATTGAAGCAGGT 1331
Query 1312 AGAGAAGGAGGATCTTCGGACAAGAATGTGGAAGCTTTTGTGAAGAGTCT--GTTTTGA 1368
||||||||||| |||||||||||| ||||| ||||||||||||| ||| |||||||
Sbjct 1332 GGAGAAGGAGGAAGTTCGGACAAGAACGTGGAGGCTTTTGTGAAGACTCTCTGTTTTGA 1390
> Ahg919257 jgi|Araly1|919257|scaffold_100538.1
Length=1470
Score = 1491 bits (807), Expect = 0.0
Identities = 1193/1373 (87%), Gaps = 52/1373 (4%)
Strand=Plus/Plus
Query 1 ATGGCGCAACCGCATTTTCTACTGGTAACGTTTCCGGCGCAAGGTCACGTGAACCCATCT 60
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 ATGGCGCCACCACATTTTCTACTGGTAACGTTTCCGGCGCAAGGTCACGTGAACCCATCT 85
Query 61 CTCCGTTTTGCTCGTCGGCTCATCAAAACAACTGGCGCACGTGTAACTTTCGCCACGTGT 120
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| | | |||
Sbjct 86 CTCCGTTTTGCTCGTCGGCTCATCAAAACAACCGGCGCACGTGTCACTTTCGTCGCTTGT 145
Query 121 CTCTCTGTCATT-CACCGCTCTATGATCCCAAACCACAACAACGTCGAAAATCTCTCTTT 179
|||| ||| || ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 146 GTCTCCGTC-TTCCACAACTCTATGATCCCAAACCACAACAACGTCGACAATCTCTCTTT 204
Query 180 CCTTACTTTCTCCGACGGATTCGACGACGGAGTCATCTCCAAC-ACCGACGA-CGTCCA- 236
|||||||||||||||||| |||||||| |||| ||| |||| | | ||| || ||| ||
Sbjct 205 CCTTACTTTCTCCGACGGTTTCGACGATGGAGGCATTTCCACCTA-CGAAGACCGT-CAG 262
Query 237 AAACCGGTTGGTAC-ACT-TCGAACG-TAATGGCGATAAAGCTCTATCGGATTTCATCGA 293
||| || || | | | || || | ||| |||||||| || |||||||| ||||||||
Sbjct 263 AAA-AGGACGG--CGAATCTC-AAGGTTAACGGCGATAAGGCCCTATCGGAGTTCATCGA 318
Query 294 AGCTAATCA-GAATGGTGACTCTCCCGTAAGTTGCTTGATCTACACGATTCTTCCCAACT 352
||||| | | ||||||||||||||| || | |||| |||||||||||||||||| ||| |
Sbjct 319 AGCTAGT-AGGAATGGTGACTCTCCGGTGACTTGCGTGATCTACACGATTCTTCTCAATT 377
Query 353 GGGTTCCAAAAGTGGCGCGTAGATTTCATCTTCCCTCTGTTCATCTCTGGATCCAACCAG 412
||| ||||||||| || ||||||||||| |||||||||| || ||||||||||||||| |
Sbjct 378 GGGCTCCAAAAGTAGCACGTAGATTTCAACTTCCCTCTGCTCTTCTCTGGATCCAACCGG 437
Query 413 CCTTCGCTTTCGACATTTATTACAATTACTCTACA--GGAAACAACTCCGTTTTCGAGTT 470
| || | ||||||||| ||||||||| | | | || ||||||||||| |||||||||||
Sbjct 438 CTTTGGTTTTCGACATCTATTACAATCA-T-TTCATGGGAAACAACTCTGTTTTCGAGTT 495
Query 471 -CCCGAATCTACCTTCTCTCGAAATCCGCGATCTGCCTTCTTTCCTCTCACCTTCCAACA 529
||| ||||| |||| || |||||||| ||||| |||||||||||| ||||||||||||
Sbjct 496 ACCC-AATCTTTCTTCACTGGAAATCCGAGATCTTCCTTCTTTCCTCACACCTTCCAACA 554
Query 530 CGAACAAAGCCGCACAAGCAGT-ATATCAAGAACTGATGGATTTTCTCA-AAGAAGAATC 587
| |||||||||||| | | | | | ||||||| ||||||| ||||||| || ||||| |
Sbjct 555 CAAACAAAGCCGCATACG-ATTCGTTTCAAGAAATGATGGAGTTTCTCATAA-AAGAAAC 612
Query 588 TAACCCGAAAATTCTCGTCAACACATTCGATTCGCTGGAGCCAGAGTTCTTAACAGCTAT 647
||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||| |
Sbjct 613 CAACCCGAAAATTCTCATCAACACTTTCGATTCGCTGGAGCCAGAGGCCTTAACGGCT-T 671
Query 648 T-CCGAATATAGAAATGGTGGCAGTTGGTCCTTTACTTCCTGCGGAGATTTTCACTGGAA 706
| |||||| | ||||||||||| ||||||||||||||||| |||||||||||| | ||||
Sbjct 672 TCCCGAATGTCGAAATGGTGGCGGTTGGTCCTTTACTTCCCGCGGAGATTTTCTCAGGAA 731
Query 707 GCGAATCAGGTAAAGATTTATCAAGAGATCATCAAAGTAGTAGTTATACACTTTGGTTAG 766
| | || || | | | || | |||||||||||||||||||||||||| |||
Sbjct 732 GTG--CCA---AATCA-GT-T---GA-A-GATCAAAGTAGTAGTTATACACTTTGGCTAG 779
Query 767 ACTCGAAAACAGAGTCCTCTGTTATTTATGTTTCTTTTGGAACAATGGTTGAGTTGTCGA 826
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 780 ACTCGAAAACAGAGTCCTCTGTTATTTACGTTTCTTTTGGAACAATGGTTGAGTTGTCCA 839
Query 827 AGAAACAGATAGAGGAACTAGCGAGAGCACTCATAGAAGGGGGAAGACCGTTCTTGTGGG 886
|||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||
Sbjct 840 AGAAACAGATAGAGGAGCTCGCGAGAGCACTCATAGAAGGGAAAAGACCGTTTTTGTGGG 899
Query 887 TTATAACTGATAAA-CTCAACagagaagcgaaaatagaaggagaagaagagacagagatt 945
|||||||||||||| | |||||||||| |||||| |||||| ||||||||||||||||||
Sbjct 900 TTATAACTGATAAAGC-CAACAGAGAAACGAAAACAGAAGGTGAAGAAGAGACAGAGATT 958
Query 946 gagaagaTAGCTGGTTTTAGACACGAGCTTGAAGAGGTTGGGATGATTGTCTCGTGGTGT 1005
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 GAGAAGATAGCTGGTTTCAGACACGAGCTTGAAGAGGTTGGGATGATTGTGTCGTGGTGT 1018
Query 1006 TCGCAGATAGAGGTTTTGAGACACCGAGCCATAGGTTGTTTTTTGACTCATTGTGGGTGG 1065
|| |||||||||||||| || ||||||||| ||||||||||| |||||||||||||||||
Sbjct 1019 TCTCAGATAGAGGTTTTAAGTCACCGAGCCGTAGGTTGTTTTGTGACTCATTGTGGGTGG 1078
Query 1066 AGCTC-ATCACTGGAGAGTTTGGTTCTCGGCGTTCCAGTGGTGGCGTTTCCGATGTGGTC 1124
||||| | | ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1079 AGCTCGA-CGCTGGAGAGTTTGGTTCTTGGCGTTCCGGTTGTGGCGTTTCCGATGTGGTC 1137
Query 1125 GGATCAGCC-AGCAAATGCGAAGCTTTTGGAAGAAA-TATGGAAGACAGGTGTGAGGGTG 1182
|||||| || | | || || ||||| ||||||||| | ||||||||||||||||||||
Sbjct 1138 GGATCAACCGA-CGAACGCTAAGCTACTGGAAGAAAGT-TGGAAGACAGGTGTGAGGGTA 1195
Query 1183 AGAGAGAACTC-GGAAGGTTTAGTAGAGAGAGGAGAGATAATGCGGTGTTTGGAAGCAGT 1241
|||||||| | ||||||||| || || ||||||||||||| | ||||||||||||||||
Sbjct 1196 AGAGAGAA-TGAGGAAGGTTTGGTGGAAAGAGGAGAGATAAGGAGGTGTTTGGAAGCAGT 1254
Query 1242 GATGGAGGCGAAATCGGTGGAGCTGAGGGAAAACGCAGAGAAATGGAAGCGTTTAGCGAC 1301
|||||||| ||| | |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 GATGGAGGAGAAGTTGGTGGAGCTGAGGGAAAACGCAAAGAAATGGAAGCGTTTAGCGAT 1314
Query 1302 TGAAGCGGGTAG-AGAAGGAGGATCTTCGGACAAGAATGTGGAAGCTTTTGTG 1353
|||||| || || |||||||||||||| ||| ||||| |||| |||||||||
Sbjct 1315 TGAAGCAGG-AGGAGAAGGAGGATCTTTGGATAAGAACATGGAGGCTTTTGTG 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5