BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05540.1
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470554 jgi|Araly1|470554|fgenesh2_kg.1__508__AT1G05540.1 1812 0.0
> Ahg470554 jgi|Araly1|470554|fgenesh2_kg.1__508__AT1G05540.1
Length=1206
Score = 1812 bits (981), Expect = 0.0
Identities = 1107/1169 (95%), Gaps = 4/1169 (0%)
Strand=Plus/Plus
Query 44 TGTGGTCACTTGAATAATAATGTCTCAGCTTCTCTTCCGTCTCTCAAAACTCTCTTCCCG 103
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 23 TGTGGTCACTTGAATAATAATGTCTCAGCTTCTCTTCCATCTCTCCAAACTCTCTTCCCG 82
Query 104 GAATAATGAGCTTATACACAAGAGCGTTCGCTTGTTTTCAACCAGCCCGTATTTGACACT 163
||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 83 GAACAATGTGCTTATACACAAGAGCGTTCGCTTGTTTTCAACAAGCCCGTATTTGACACT 142
Query 164 TGGCAGCGTTGTTGAAGACTTGCCTGAAGAAGACGGCAGCTACATCGGAGATATCCTCTT 223
||||||||||| |||||||||||| | ||||| |||| ||||||||||||||||||||||
Sbjct 143 TGGCAGCGTTGGTGAAGACTTGCCGGGAGAAGGCGGCGGCTACATCGGAGATATCCTCTT 202
Query 224 GTTCGATCCGGCCAAGGAAGAGTTAGTCACAGTCCGGGACAAAACAATTCCCGAAAAGCT 283
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 203 GTTCGATCCGGCCAAGGAAGAGTTAGTCACAGTCCGGGACAAAACAATACCTGAAGAGCT 262
Query 284 CGTTAACTCGAGAGTGGTCGGAGCTTCACATGGATGGACATTTTTCTCTGACCGATGCAA 343
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TATTAACTCAAAACTGGTCGGAGCTTCACATGGATGGACATTTTTCTCTGACCGATGCAA 322
Query 344 TCATAATTCTGTATGTATCAGCGACCTTTTTACTCCCATGGCTTCCAAATCAAACACAAA 403
||||||||||||| |||||||||||||||||| |||| |||||||||| |||||||| ||
Sbjct 323 TCATAATTCTGTACGTATCAGCGACCTTTTTAATCCCCTGGCTTCCAAGTCAAACACCAA 382
Query 404 GATAATTCCTCTGCCTCTGCTTACTACTATGATCTATGGCCAAACAGAAGCTGTCTGGAA 463
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 383 GATAATTCCTCTGCCTCTGCTTACTACTATGATCTATGGCCAAACAGATGTTGTCTGGAA 442
Query 464 CGTGGCAATGTCGTCATCTTCTCCTCACCAAGACAATGAAGAAGAAGACTGTGTCGTGGC 523
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 443 CGTGGCAATGTCTTCATCTTCTCCTCACCAAGACAATGAGGAAGAAGACTGTGTAGTGGC 502
Query 524 TATCAATTTCTTGGGTAGCCAACTGAGTGTGTGCAGGCCCGGTCGTGACCACGGTTGGAC 583
||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||
Sbjct 503 TATCAATTTCTTGGGTAACCAACTGAGTATGTGCAGGCCCGGTCGTGACCTCTGTTGGAC 562
Query 584 TAACAAACAAATCCCTTTCATCTGCTCGGAAAACTCAAATCTTATGTACTCGAAGAGAGA 643
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TAACAAACAAATCCCTTTCGTCTGCTCGGAAAACTCAAATCTTATGTACTCGAAGAGAGA 622
Query 644 TCAAAGGTTTTATTTGCCTGCTCCTGGAGGCAATTACTTGTGCTCTTGGGATCTCCACTT 703
||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 623 TCAAAGGTTCTATTTGCCTGCTCCTGGAGGCAACTACTTGTGCTCTTATGATCTCCACTT 682
Query 704 CGATAACGATCCTAAGTTCAATGAGTTGGTGTTTCTTAATCTCCCTGAGTTGCCACAGTC 763
|||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 683 CGATAACGATCCTATGTTCAATGAGTTGGTGTTTCTGAACCTCCCTGAGTTGCCACAGTC 742
Query 764 CGAGTGGGAGCTGTTGAATTCTTGTTTCAAGGAGGACCATTGGGTGGAGTCACCTTCCGG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 CGAGTGGGAGCTGTTGAATTCTTGTTTCAAGGAGGACCATTGGGTGGAGTCACCTTCCGG 802
Query 824 CCAAAGTTTCTTAGTCAAATGGTACTCTCACA-TCCCTTCTCAACGATACAAAGATCCGA 882
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 803 CCAAAGTTTCTTAGTCAAATGGTACTCTCA-AGTCCCTTCTCAACGATACAAAGAGCCGA 861
Query 883 TATTGATGGTGCTTAGAGAGGATGAAGAAACAGAAGAGGGAACAAGAAATATGTGTTACA 942
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 862 TATTGATGGTGTTTAGAGAGGATGAAGAAACAGAAGAGGGAACAAGAAACATGTGTTACA 921
Query 943 CCGAGGACATTGGAGATCTTTGTATCTTCCTTTCAAAGAGTGATCCTTTCTGTGTTGTGG 1002
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 922 CCGAGGACATTGGAGATCTTTGCATCTTCCTTTCAAAGAGTGATCCTTTCTGTGTTGTGG 981
Query 1003 CAAGCTCTTGCCCTGGTCTCAAACCCAACTCCATCTACTTGATGGGCCGTTGCTTTGCTG 1062
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 982 CAAGCTCTTGCCCTGGTCTCAAACCTAACTCCATCTACTTGATGGGCCGTTGCTTTGCTG 1041
Query 1063 TTTATGATCTCACCACCCGAACCGCCCGTCACTTCAAAGCC-CCCAAAGGTGGACCAGAA 1121
|||||||||||||||||||||| |||| |||||| ||| || ||||||| |||||| |||
Sbjct 1042 TTTATGATCTCACCACCCGAACAGCCCATCACTTTAAA-CCTCCCAAAGATGGACCTGAA 1100
Query 1122 AGAGTTCCTTTCCTCCCTTATTGGCTTCCTCCATTTTCTATCTAGTTCTTTGGTTGGTGT 1181
|| |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 1101 AGGGTTCCTTTCCTCCCCTACTGGCTTCCTCCATTTTCTACCTAGTTCTTTGGTTGGTGT 1160
Query 1182 TAATGTTATATGTGGTGTGTTTCGATTTT 1210
| | ||||||| ||||||||||||||||
Sbjct 1161 TGGTTTTATATGCGGTGTGTTTCGATTTT 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47463031665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5