BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05550.3
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470555 jgi|Araly1|470555|fgenesh2_kg.1__509__AT1G05550.1 568 6e-161
Ahg922068 jgi|Araly1|922068|scaffold_103349.1 60.2 4e-08
> Ahg470555 jgi|Araly1|470555|fgenesh2_kg.1__509__AT1G05550.1
Length=949
Score = 568 bits (307), Expect = 6e-161
Identities = 349/369 (95%), Gaps = 4/369 (1%)
Strand=Plus/Plus
Query 388 CCCTTATTTGACACTTGGCACTAGGGTTAAGAAAATTTTGCC-GGCCGGCTGCAAAATTG 446
||||||||||||||||||||||||||||||| || ||||||| || ||||||||||| ||
Sbjct 142 CCCTTATTTGACACTTGGCACTAGGGTTAAGGAAGTTTTGCCAGG-CGGCTGCAAAACTG 200
Query 447 GAGATGTTCTTTTGTTTGACCCGACCAAGGAAGAGATAGTCACGGTCCCGGACAAAACAA 506
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 201 GAGATGTTCTTTTGTTTGACCCGACCAAAGAAGAGATAGTCACGGTCCCGGACAAAACAA 260
Query 507 TTCCCGAAGAGCTCATGGATGAAGAAATGATGGGAGCTTCCCATGGATGGGGATTTTTCT 566
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 261 TTCCCAAAGAGCTCATGGATGAAGAAATGATGGGAGCTTCCCATGGATGGGGATTTTTTT 320
Query 567 GTGACCGGA-CTGATCGTTCCGTACGTATCAGCGACATTTTCAATCCTTTGGCATCCAAA 625
|||||||| | |||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 321 GTGACCGGCGC-GATCGTTCTGTTCGTATCAGCGACATTTACAATCCTTTGGCATCCAAA 379
Query 626 ACAAACCCTGTCATGATTCCTCTGCCTAGGCTTACGGCTCTGCCCACTGGCCAAACCGAA 685
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TCAAACCCTGTCATCATTCCTCTGCCTAGGCTTACGGCTCTGCCCACTGGCCAAACCGAA 439
Query 686 AAAGTTTTTAACGTAGCCATGTCCTCCTCTTCTCCTCTTGGTGAGGAAGACTGTGTAGTG 745
|||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GAAGTCTGTAACGTAGCAATGTCCTCCTCTTCTCCTCTTGGTGAGGAAGACTGTGTAGTG 499
Query 746 GCTATCAAG 754
|||||||||
Sbjct 500 GCTATCAAG 508
Score = 429 bits (232), Expect = 3e-119
Identities = 276/298 (93%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 1030 AGGAATCTACCACAAAACAAAGGGGTTGATGGTTTTTAGAGAAGAGGAGACGACGGAAGG 1089
|||||||||| |||| |||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 652 AGGAATCTACTACAAGACAAAGAGGTTGATGGTGTTTAGAGAGGAGGAGACGACGGAAGG 711
Query 1090 AAAAATTATGTGTTACACCGAGGACATTGGAGACATGTGCATTTTCCTTGCAAGCAACGA 1149
||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 712 AAAGATTATGTGTTACACAGAGGACATTGGAGACATGTGCATTTTCCTTGCAAACAACGA 771
Query 1150 GGCTTTCTGTATCCCGGCTAGCTCCTGCCTCGGCCTCAAGCCTAACTGCGTCTATTATAT 1209
||||||||| |||||||||||||| ||||| |||||||||||||||| | |||||| |||
Sbjct 772 GGCTTTCTGCATCCCGGCTAGCTCATGCCTTGGCCTCAAGCCTAACTCCATCTATTTTAT 831
Query 1210 GGGACGTGGCTTTGGTTTTTACGATCTCACTACCGGAGAGGCACATCATTATAAAGCTCC 1269
|||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 832 GGGACGTGGCTTAGGTATTTACGATCTCACTACCGGTGAGGCACATCATTATAAAGCTCC 891
Query 1270 CAAAGGTGCACCAAGCGCTCTGACCGCCCCTTACTGGCTTCCTCCATTTGCTATCTAG 1327
|||||||||||| |||| ||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 892 CAAAGGTGCACCCAGCGTTCTCACCACCCCTTACTGGCTTCCTCCATTTTCTATCTAG 949
> Ahg922068 jgi|Araly1|922068|scaffold_103349.1
Length=704
Score = 60.2 bits (32), Expect = 4e-08
Identities = 55/66 (83%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 537 TGGGAGCTTCCCATGGATGGGGATTTTTCTGTGACCGGACTGATCGTTCCGT-ACGTATC 595
|||||||||||||||||||||||||||||| | | || ||||| || || || ||||
Sbjct 247 TGGGAGCTTCCCATGGATGGGGATTTTTCTCCAATAGAACAGATCGGTC-GTTACTTATC 305
Query 596 AGCGAC 601
||||||
Sbjct 306 AGCGAC 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839774895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5