BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05560.1
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919257 jgi|Araly1|919257|scaffold_100538.1 2237 0.0
Ahg919252 jgi|Araly1|919252|scaffold_100533.1 1461 0.0
> Ahg919257 jgi|Araly1|919257|scaffold_100538.1
Length=1470
Score = 2237 bits (1211), Expect = 0.0
Identities = 1375/1453 (95%), Gaps = 15/1453 (1%)
Strand=Plus/Plus
Query 58 aaaaaaaaTGGCGCCACCGCATTTTCTACTGGTAACGTTTCCGGCGCAAGGTCACGTGAA 117
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 19 AAAAAAAATGGCGCCACCACATTTTCTACTGGTAACGTTTCCGGCGCAAGGTCACGTGAA 78
Query 118 CCCATCTCTCCGTTTTGCTCGTCGGCTCATCAAAAGAACCGGCGCACGTGTCACTTTCGT 177
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 79 CCCATCTCTCCGTTTTGCTCGTCGGCTCATCAAAACAACCGGCGCACGTGTCACTTTCGT 138
Query 178 CACTTGTGTCTCCGTCTTCCACAACTCCATGATCGCAAACCACAACAAAGTCGAAAATCT 237
| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |||||
Sbjct 139 CGCTTGTGTCTCCGTCTTCCACAACTCTATGATCCCAAACCACAACAACGTCGACAATCT 198
Query 238 CTCTTTCCTTACTTTCTCCGACGGTTTCGACGATGGAGGCATTTCCACCTACGAAGACCG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CTCTTTCCTTACTTTCTCCGACGGTTTCGACGATGGAGGCATTTCCACCTACGAAGACCG 258
Query 298 TCAGAAAAGGTCGGTGAATCTCAAGGTTAACGGCGATAAGGCACTATCGGATTTCATCGA 357
|||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 259 TCAGAAAAGGACGGCGAATCTCAAGGTTAACGGCGATAAGGCCCTATCGGAGTTCATCGA 318
Query 358 AGCTACTAAGAATGGTGACTCTCCCGTGACTTGCTTGATCTACACGATTCTTCTCAATTG 417
||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 319 AGCTAGTAGGAATGGTGACTCTCCGGTGACTTGCGTGATCTACACGATTCTTCTCAATTG 378
Query 418 GGCTCCAAAAGTAGCACGTAGATTTCAACTTCCCTCCGCTCTTCTCTGGATCCAACCGGC 477
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 379 GGCTCCAAAAGTAGCACGTAGATTTCAACTTCCCTCTGCTCTTCTCTGGATCCAACCGGC 438
Query 478 TTTGGTTTTCAACATCTATTACACTCATTTCATGGGAAACAAGTCCGTTTTCGAGTTACC 537
|||||||||| |||||||||||| |||||||||||||||||| || ||||||||||||||
Sbjct 439 TTTGGTTTTCGACATCTATTACAATCATTTCATGGGAAACAACTCTGTTTTCGAGTTACC 498
Query 538 TAATCTGTCTTCTCTGGAAATCAGAGATCTTCCATCTTTCCTCACACCTTCCAACACAAA 597
||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 499 CAATCTTTCTTCACTGGAAATCCGAGATCTTCCTTCTTTCCTCACACCTTCCAACACAAA 558
Query 598 CAAAGGCGCATACGATGCGTTTCAAGAAATGATGGAGTTTCTCATAAAAGAAACCAAACC 657
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 559 CAAAGCCGCATACGATTCGTTTCAAGAAATGATGGAGTTTCTCATAAAAGAAACCAACCC 618
Query 658 GAAAATTCTCATCAACACTTTCGATTCGCTGGAACCAGAGGCCTTAACGGCTTTCCCGAA 717
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 619 GAAAATTCTCATCAACACTTTCGATTCGCTGGAGCCAGAGGCCTTAACGGCTTTCCCGAA 678
Query 718 TATCGATATGGTGGCGGTTGGTCCTTTACTTCCCACGGAGATTTTCTCAGGAAGCACCAA 777
| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 679 TGTCGAAATGGTGGCGGTTGGTCCTTTACTTCCCGCGGAGATTTTCTCAGGAAG-TGC-- 735
Query 778 CAAATCAGTTAAAGATCAAAGTAGTAGTTATACACTTTGGCTAGACTCGAAAACAGAGTC 837
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CAAATCAGTTGAAGATCAAAGTAGTAGTTATACACTTTGGCTAGACTCGAAAACAGAGTC 795
Query 838 CTCTGTTATTTACGTTTCCTTTGGAACAATGGTTGAGTTGTCCAAGAAACAGATAGAGGA 897
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CTCTGTTATTTACGTTTCTTTTGGAACAATGGTTGAGTTGTCCAAGAAACAGATAGAGGA 855
Query 898 ACTAGCGAGAGCACTCATAGAAGGGAAACGACCGTTTTTGTGGGTTATAACTGATAAATC 957
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 856 GCTCGCGAGAGCACTCATAGAAGGGAAAAGACCGTTTTTGTGGGTTATAACTGATAAAGC 915
Query 958 CAACagagaaacgaaaacagaaggagaagaagagacagagattgagaagaTAGCTGGATT 1017
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 916 CAACAGAGAAACGAAAACAGAAGGTGAAGAAGAGACAGAGATTGAGAAGATAGCTGGTTT 975
Query 1018 CAGACACGAGCTTGAAGAGGTTGGGATGATTGTGTCGTGGTGTTCGCAGATAGAGGTTTT 1077
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 976 CAGACACGAGCTTGAAGAGGTTGGGATGATTGTGTCGTGGTGTTCTCAGATAGAGGTTTT 1035
Query 1078 AAGTCACCGAGCCGTAGGTTGTTTTGTGACTCATTGTGGGTGGAGCTCGACGCTGGAGAG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 AAGTCACCGAGCCGTAGGTTGTTTTGTGACTCATTGTGGGTGGAGCTCGACGCTGGAGAG 1095
Query 1138 TTTGGTTCTTGGCGTTCCGGTTGTGGCGTTTCCGATGTGGTCGGATCAACCGACGAACGC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TTTGGTTCTTGGCGTTCCGGTTGTGGCGTTTCCGATGTGGTCGGATCAACCGACGAACGC 1155
Query 1198 GAAGCTACTGGAAGAAAGTTGGAAGACTGGTGTGAGGGTAAGAGAGAACAAGGATGGTTT 1257
|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 1156 TAAGCTACTGGAAGAAAGTTGGAAGACAGGTGTGAGGGTAAGAGAGAATGAGGAAGGTTT 1215
Query 1258 GGTGGAGAGAGGAGAGATCAGGAGGTGTTTGGAAGCCGTGATGGAGGAGAAGTCGGTGGA 1317
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1216 GGTGGAAAGAGGAGAGATAAGGAGGTGTTTGGAAGCAGTGATGGAGGAGAAGTTGGTGGA 1275
Query 1318 GTTGAGGGAAAACGCAAAGAAATGGAAGCGTTTAGCGATGGAAGCGGGTAG-AGAAGGAG 1376
| ||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||
Sbjct 1276 GCTGAGGGAAAACGCAAAGAAATGGAAGCGTTTAGCGATTGAAGCAGG-AGGAGAAGGAG 1334
Query 1377 GATCTTCGGATAAGAACATGGAGGCTTTTGTGGAGGATATTTGTGGAGAATCTCTTATTC 1436
|||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 1335 GATCTTTGGATAAGAACATGGAGGCTTTTGTGGAGGAGATTTGTGGAGACTCTCTTGTTC 1394
Query 1437 AAAACTTGTGTGAAGCAGAGGAGGTAAAAGTAAAGTAAATAAAGGACAAAAGAGTTGGTG 1496
||| ||||||||||||||||| || ||||||||| | |||||||||||||||
Sbjct 1395 AAAGGTTGTGTGAAGCAGAGGATGT-----TAAAGTAAAC---G-ACAAAAGAGTTGGTG 1445
Query 1497 TCTAGAA-GTGGC 1508
||||||| |||||
Sbjct 1446 TCTAGAAAGTGGC 1458
> Ahg919252 jgi|Araly1|919252|scaffold_100533.1
Length=1421
Score = 1461 bits (791), Expect = 0.0
Identities = 1196/1384 (86%), Gaps = 57/1384 (4%)
Strand=Plus/Plus
Query 58 aaaaaaaaTGGCGCCACCGCATTTTCTACTGGTAACGTTTCCGGCGCAAGGTCACGTGAA 117
||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 14 AAAAACAATGGCGCTACCGCATTTTCTACTGGTAACGTTTCCGGCTCAAGGTCACGTGAA 73
Query 118 CCCATCTCTCCGTTTTGCTCGTCGGCTCATCAAAAGAACCGGCG-CACGTGTCACTTTCG 176
||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||||| |
Sbjct 74 CCCATCTCTTCGTTTTGCTCGTCGGCTCATCAAAACCACCGG-GACACGTGTCACTTTTG 132
Query 177 TCACTTGTGTCTCCGTCTTCCACAACTCCATGATCGCAAACCACAACAAAGTCGAA--A- 233
||| ||| |||| | | || || ||| |||||| || |||||||||| ||| || |
Sbjct 133 CCACGTGTCTCTCTGCCATCAACCGCTCTATGATCCCAGACCACAACAACGTC-AACGAT 191
Query 234 AT-CTCTCTTTCCTTACTTTCTCCGACGGTTTCGACGATGGAGGCATTTCCACCTA-CGA 291
| |||||||||||||||||||||||||| |||||||| |||| ||| |||| | | |||
Sbjct 192 CTGCTCTCTTTCCTTACTTTCTCCGACGGATTCGACGACGGAGTCATATCCAAC-ACCGA 250
Query 292 AGACCGT-CAGAAA-AGGTCGGTGAATC-TC-AAGGTTAACGGCGATAAGGCACTATCGG 347
|| ||| || ||| ||| | |||| | || || | |||||||||||| || |||||||
Sbjct 251 CGA-CGTCCA-AAACCGGTTGCTGAA-CTTCGAACG-TAACGGCGATAAAGCTCTATCGG 306
Query 348 ATTTCATCGAAGCT-A-CTAAGAATGGTGACTCTCCCGTGACTTGCTTGATCTACACGAT 405
|||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||
Sbjct 307 ATTTCATCGAAGCTAATCT-A-AATGGTGACTCTCCCGTGACTTGCTTGATCTACACGAT 364
Query 406 TCTTCTCAATTGGGCTCCAAAAGTAGCACGTAGATTTCAAC-TTCCCTCCGCTCTTCTCT 464
||||| ||| |||||||||||||| || |||||||||| || ||||||| | ||||||||
Sbjct 365 TCTTCCCAACTGGGCTCCAAAAGTGGCGCGTAGATTTC-ACATTCCCTCTGTTCTTCTCT 423
Query 465 GGATCCAACCGGCTTTGGTTTTCAACATCTATTACACTCATTTC-ATGGGAAACAAGTCC 523
|||||||||| || || |||||| |||| ||||||| | | || | |||||||| ||
Sbjct 424 GGATCCAACCAGCCTTCGTTTTCGACATTTATTACAATTA-CTCTACAGGAAACAACTCT 482
Query 524 GTTTTCGAGTTACCTAATCTGT-CTTCTCTGGAAATCAGAGATCTTCCATCTTTCCTCAC 582
||||||||||| || ||||| | ||||||| | |||| | |||||||| ||||||||| |
Sbjct 483 GTTTTCGAGTTCCCGAATCT-TCCTTCTCTCGCAATCCGCGATCTTCCTTCTTTCCTCTC 541
Query 583 ACCTTCCAACACAAACAAAGGCGCATACGATGC-GT-T-TCAAGAAATGATGGAGTTTCT 639
|||||||||||| ||||||| ||| || | || || | || |||| |||||||||||||
Sbjct 542 ACCTTCCAACACGAACAAAGCCGC--AC-AAGCAGTATATCTAGAACTGATGGAGTTTCT 598
Query 640 CATAA-AAGAAACCAAACCGAAAATTCTCATCAACACTTTCGATTCGCTGGAACCAGAGG 698
|| || ||||| | || |||||||||||| ||||||| |||||||||||||| |||||
Sbjct 599 CA-AAGAAGAATCTAACCCGAAAATTCTCGTCAACACATTCGATTCGCTGGAGCCAGACT 657
Query 699 CCTTAACGGCT-TTCCCGAATATCGATATGGTGGCGGTTGGTCCTTTACTTCCCACGGAG 757
|||||| ||| || |||||| | || |||||||| ||||||||||||||||| |||||
Sbjct 658 TCTTAACAGCTATT-CCGAATGTAGAAATGGTGGCAGTTGGTCCTTTACTTCCTGCGGAG 716
Query 758 ATTTTCTCAGGAAGC--ACCA---ACAA-A-TCAGTTAA-AGATCAAAGTAGTAGTTATA 809
|||||| | |||||| | || | || | | | | || ||||||||||||||||||||
Sbjct 717 ATTTTCACTGGAAGCGAATCAGGTA-AAGATTTA-TCAAGAGATCAAAGTAGTAGTTATA 774
Query 810 CACTTTGGCTAGACTCGAAAACAGAGTCCTCTGTTATTTACGTTTCCTTTGGAACAATGG 869
||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 775 AACTTTGGTTAGACTCGAAAACAGAGTCCTCTGTTATTTATGTTTCTTTTGGAACAATGG 834
Query 870 TTGAGTTGTCCAAGAAACAGATAGAGGAACTAGCGAGAGCACTCATAGAAGGGAAACGAC 929
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 835 TTGAGTTGTCCAAGAAACAAATAGAGGAACTAGCGAGAGCACTCATAGAAGGGAAAAGAC 894
Query 930 CGTTTTTGTGGGTTATAACTGATAAATC-CAACagagaaacgaaaa-cagaaggagaaga 987
|||| |||||||||||||| ||||| | |||||||||| | |||| | |||||||||||
Sbjct 895 CGTTCTTGTGGGTTATAACCAATAAA-CTCAACAGAGAAGCAAAAATC-GAAGGAGAAGA 952
Query 988 agagacagagattgagaagaTAGCTGGATTCAGACACGAGCTTGAAGAGGTTGGGATGAT 1047
||||||||||||||| |||||||| | |||||||| |||||||||||||||||||||||
Sbjct 953 AGAGACAGAGATTGAAAAGATAGCAAGTTTCAGACATGAGCTTGAAGAGGTTGGGATGAT 1012
Query 1048 TGTGTCGTGGTGTTCGCAGATAGAGGTTTTAAGTCACCGAGCCGTAGGTTGTTTTGTGAC 1107
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1013 TGTGTCGTGGTGTTCTCAGATAGAGGTTTTAAGTCACCGAGCCGTAAGTTGTTTTGTGAC 1072
Query 1108 TCATTGTGGGTGGAGCTCGA-CGCTGGAGAGTTTGGTTCTTGGCGTTCCGGTTGTGGCGT 1166
|||||||||||||||||| | ||||||||||||||||||| |||||||| || |||||||
Sbjct 1073 TCATTGTGGGTGGAGCTC-ATCGCTGGAGAGTTTGGTTCTCGGCGTTCCAGTGGTGGCGT 1131
Query 1167 TTCCGATGTGGTCGGATCAACC-GACGAACGCGAAGCTACTGGAAGAAAGT-TGGAAGAC 1224
|||||||||||||||||||||| | |||| |||||||| ||||| ||| | ||||||||
Sbjct 1132 TTCCGATGTGGTCGGATCAACCAG-CGAATGCGAAGCTTTTGGAAAAAA-TATGGAAGAC 1189
Query 1225 TGGTGTGAGGGTAAGAGAGAACAAGGATGGTTTGGTGGAGAGAGGAGAGATCAGGAGGTG 1284
||||||||||| ||||||||| ||| ||||| ||||||||||||||||| | | ||||
Sbjct 1190 AGGTGTGAGGGTGAGAGAGAACTCGGAAGGTTTAGTGGAGAGAGGAGAGATAAAGCGGTG 1249
Query 1285 TTTGGAAGCCGTGATGGAGGAGAAGTCGGTGGAGTTGAGGGAAAACGCAAAGAAATGGAA 1344
||||||||| ||||||||||||||||| | |||| |||||||||||||| ||||||||||
Sbjct 1250 TTTGGAAGCAGTGATGGAGGAGAAGTCTGAGGAGCTGAGGGAAAACGCAGAGAAATGGAA 1309
Query 1345 GCGTTTAGCGATGGAAGCGGGTAGAGAAGGAGGATCTTCGGATAAGAACATGGAGGCTTT 1404
|||||||||||| ||||| ||| ||||||||||| |||||| |||||| ||||||||||
Sbjct 1310 GCGTTTAGCGATTGAAGCAGGTGGAGAAGGAGGAAGTTCGGACAAGAACGTGGAGGCTTT 1369
Query 1405 TGTG 1408
||||
Sbjct 1370 TGTG 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61858557880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5