BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G05575.1

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919259 jgi|Araly1|919259|scaffold_100540.1                        424    4e-118


> Ahg919259 jgi|Araly1|919259|scaffold_100540.1
Length=323

 Score =  424 bits (229),  Expect = 4e-118
 Identities = 267/285 (94%), Gaps = 4/285 (1%)
 Strand=Plus/Plus

Query  64   TTCTTGTCTGAATCTTTAAAACATCAATGGAAGGAAGCTTTGAAGGCATGTTAATGAAAG  123
            |||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1    TTCTTGCCTGAATGTTTGAAATATCAATGGAAGGAAGCTTTGAAGGCATGTTAATGAAAG  60

Query  124  TGAGCATTTTTGCTCTGATTCAAGGGCTTGTGTATCTCATACTCAGC-AAATCTTCGAGC  182
            ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| 
Sbjct  61   TGAGCATTTTTGCTCTGATTCAAGGGCTTGTGTATCTCATACT-ATCTAAATCTTCGAGG  119

Query  183  GTTTTCTCTACGTCAAAGACGATGAAGAGAGCTTACAGTTTCCGGTCAGCGAGATCCATC  242
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  120  GTTTTCTCTACGTCAAAGACGATGAAGAGAGCTTATAGTTTCCGGTCAGCGAGATCCATC  179

Query  243  AGTATCCGCAGGATTCTAGCTGTTCTTCAAGACATGCCAGCAGGCGGCGAGATGTCTCCT  302
            || ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct  180  AGCATCCGTAGGATTCTGGCTGTTCTTCAAGATATGCCTGCAGGCGGCGAGATGTCTCCT  239

Query  303  TCTGCCATGGGACCTTCTCTTGCTTCTTCT-CTATCCTCACCATC  346
            ||||||||||||||||||||||||||| || | ||| ||||||||
Sbjct  240  TCTGCCATGGGACCTTCTCTTGCTTCTCCTTC-ATCGTCACCATC  283



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18047593597


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5