BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05577.1
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470558 jgi|Araly1|470558|fgenesh2_kg.1__512__AT1G05577.1 2091 0.0
> Ahg470558 jgi|Araly1|470558|fgenesh2_kg.1__512__AT1G05577.1
Length=1431
Score = 2091 bits (1132), Expect = 0.0
Identities = 1290/1363 (95%), Gaps = 24/1363 (2%)
Strand=Plus/Plus
Query 1 GAAAACTCTTTGAGAGTTTTGAAAAATCTAAGTAGCTTTGGCTTATATAAGTTCTTTTGT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAACTCTTTTAGAGTTTTGAAAAATCTAAGTAGCTTTGGCTTATATAAGTTCTTTTGT 60
Query 61 aaaagacacacagagaataaaatcgaagacc---aaaacaaa-a-agaaagagagatgga 115
||||| |||||||||||||||| ||||||| |||| ||| | |||||||||||||||
Sbjct 61 AAAAG--ACACAGAGAATAAAATTGAAGACCAAAAAAAAAAAGAGAGAAAGAGAGATGGA 118
Query 116 aagTAATGGTGGAGGAGGAGAAGTAAGAAGAGTGAATTTAGTTTATTTCCTTAGCCGTTC 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AAGTAATGGTGGAGGAGGAGAAGTAAGAAGAGTGAATTTAGTTTATTTCCTTAGCCGTTC 178
Query 176 GGGTCACGTTGACCATCCTCATCTCTTGCGTGTTCATCATCTCTCTCGTAATGGAGTCTT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGGTCACGTTGACCATCCTCATCTCTTGCGTGTTCATCATCTCTCTCGTAATGGAGTCTT 238
Query 236 TCTCCGAGATGTGAAGAAATGGTTAGCAGACGCACGAGGCGATGCCATGCCTGATGCATT 295
||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 239 TCTACGAGATGTGAAAAAATGGTTAGCGGACGCACGAGGCGATGCGATGCCTGACGCATT 298
Query 296 TTCTTGGTCTTGTAAGAGGAGGTATAAGAATGGTTATGTATGGCAAGATTTATTGGACGA 355
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTGTTGGTCTTGTAAGAGGAGGTATAAGAATGGTTATGTATGGCAAGATTTATTGGACGA 358
Query 356 TGATCTTATCACTCCTATCTCTGATAATGAATATGTCCTCAAAGGATCTGAGATTCTTCT 415
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGATCTTATTACTCCTATCTCTGATAATGAATATGTCCTCAAAGGATCTGAGATTCTTCT 418
Query 416 AAGCTCTCCAAAGGAGGATTATCCTAATGTGGAGAAGAAAGCTTGGGTGACAAGAAAC-- 473
|||||||||||| ||||||| |||| | |||||||||||||||||||||||| |||||
Sbjct 419 AAGCTCTCCAAAAGAGGATTCTCCTTACGTGGAGAAGAAAGCTTGGGTGACACGAAACGG 478
Query 474 --G-GT----GGAATAGACGCTGAAGAAAAACTCCAGAAGTTGAAACTAACGTCAGAGAA 526
| || |||| |||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 479 TGGTGTCGGCGGAACAGACGCTGAAGAAAAACTCCAGAAGTCGAAACTAAGGTCGGAGAA 538
Query 527 GATCCAAAAAGAGTCTCCGGTCTTCTGCTCACAGAGATCGACGGCAACAACGTCGACAGT 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GATCCAAAAAGAGTCTCCGGTCTTCTGCTCACAGAGATCGACGGCAACAACGTCGACAGT 598
Query 587 CACGGAGGAATCCACCACGAACGAAGAAGGTTTCGTTCTTAAGAAACAAGATCCGAAAAC 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CACGGAGGAATCCACCACGAACGAAGAAGGTTTCGTTCTTAAGAAACAAGATCCGAAAAA 658
Query 647 AGTCTCCGGCCAGAGAGACGGTTCGACGGAGAACGGGTCGGGTAACGATGTGGAGTCGGG 706
|||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 659 AGTCTCCGGCCAAAGAGATGGTTCGACGGAAAACGGGTCGGGTAACGACGTGGAGTCTGG 718
Query 707 TCGACCAAGTGTATCGTCTACGACGTCGTCTTCGAGTTATATCAAGAATAAGAGCTATTC 766
|||||| |||||||| || |||||||||||||||||||| ||||||| | |||| |||||
Sbjct 719 TCGACCGAGTGTATCATCGACGACGTCGTCTTCGAGTTACATCAAGAGTGAGAGATATTC 778
Query 767 GAGCGTACGTGCCTCTCACGTGTTACGGAACTTGATGAAGTGTGGTGGTTTGGACACAAA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 779 AAGCGTACGTGCCTCTCACGTGTTACGGAACTTGATGAAGTGTGGTGGTTTGGATACAAA 838
Query 827 CGACGCCGTATTGGTGCCTTTGAATAAGTCTAGGTCTGGGGCTTTTGGTCCGGCTTGGGA 886
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 839 CGATGCCGTATTGGTGCCTTTGAATAAGTCTAGGTCTGGGGTTTTTGGTCCGGCTTGGGA 898
Query 887 AGATGAACGCAGATACCAATACCACCAACAGCACAATGCTCGAAAAAGCTTCGAAGGAGC 946
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 899 AGATGAACGCAGATACCAATACCACCAACAGCACAATGCTCGAAAAAGCTTTGAAGGAGC 958
Query 947 ATGGAGTGGCATAAAGATGAAAGAGACAATTGAGTTTTGTAAACCAAAGGTTGCTCCAAG 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 ATGGAGTGGCATAAAGATGAAAGAGACAATTGAGTTTTGTAAACCAAAGGTTGCTTCAAG 1018
Query 1007 CAAGCCTTCCATGGCTCCATTATGCTCGCAATGTGGGAAGTTGTTCAAACCTGAGAAGAT 1066
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 CAAGCCTTCCATGGCTCCATTATGCTCGCAATGTGGGAAGATGTTCAAACCTGAGAAGAT 1078
Query 1067 GCATTCACACATGAAATTATGTCGAGGGATGAAGAATTCATCGGCGAATAATGATTTGAT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GCATTCACACATGAAATTATGTCGAGGGATGAAGAATTCATCGGCGAATAATGATTTGAT 1138
Query 1127 GACAAGCAATAATACCGTTAAACCGAGGCAGCAACGGTGCAGAAACATTCCTGGAAATCC 1186
|||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 GACAGGCAATAATACCGGTAAACCGAGGCAGC---GGTGCAGAAACATTCCTGGAAATCC 1195
Query 1187 ATTGGGACATCAACGTGTATTGACGACTACTCTCAAAGAGTGATAAC-GCGGAAAATCT- 1244
||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
Sbjct 1196 ATTGGGACATCAACGTGTATTGAGGACTACTCTCAAAGAGTGATAAATGCGGAAAAAATT 1255
Query 1245 GTTTGCTAGTTC-GTGAAATTCTGTTTGAATACCATGGAGCTTGACTTTAAGTCAGAAAG 1303
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1256 GTTTGCTAGTTCAGTGAAATTCTGTTTGAATACCATGGAGCTTGATTTTTAGTCAGAAAG 1315
Query 1304 TGCATTTGGATCATCTAAAAATTGACAATTTGAATATTGATGT 1346
|| |||||||||||||||| |||||||||||||||||| |||
Sbjct 1316 TGGATTTGGATCATCTAAA--TTGACAATTTGAATATTGCTGT 1356
Score = 122 bits (66), Expect = 5e-27
Identities = 73/76 (96%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 1374 aaaaaaaCGTGTTTAATAAACAAAACGTATCTCATGACAACATGTTCTTTGTCTTTTTGT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1357 AAAAAAACGTGTTTAATAAACAAAACGTATCTCATGACAACATGTTCTTTGTCGTTTTGT 1416
Query 1434 TTCCGATTG-TAGAAT 1448
||||||| | ||||||
Sbjct 1417 TTCCGAT-GATAGAAT 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56221201620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5