BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05580.1
Length=2842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919261 jgi|Araly1|919261|scaffold_100542.1 4296 0.0
> Ahg919261 jgi|Araly1|919261|scaffold_100542.1
Length=2642
Score = 4296 bits (2326), Expect = 0.0
Identities = 2539/2644 (96%), Gaps = 5/2644 (0%)
Strand=Plus/Plus
Query 89 ACCAGCCATCGTAGGAGGAGATGTCTTCCGGAGCCCCCCTTAATGTGACAAATCCTAACT 148
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1 ACCAGCCATCGTAGGAGGAGATGTCTTCCGGAGCCCCCCTTAATGTGACGAATCCTAGCT 60
Query 149 ATGATATTGAAGA-ATCGCGTTTTGGAAAGATTGTGTGTTATGACCAAAGTCTTCTCTTT 207
||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 ATGATATTG-AGATATCGCGTTTTGGAAAAATTGTGTGTTATGATCAAAGTCTTCTCTTT 119
Query 208 GAGAAGAGAGAACAAAAGGGATGGGAGAGCGGAAGTACGCTAGCCTCTTCCCTTCCGTTC 267
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 GAGAAGAGAGAACAAAAGGGATGGGAGAGCGGAAGTACGCTCGCCTCTTCCCTTCCGTTC 179
Query 268 TTCATAACGCAACTCTTTGTCGCGAACCTTAGCTATCGTGTCCTCTACTATCTAACCCGA 327
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 180 TTCATAACGCAACTCTTTGTCGCGAACCTTAGCTATCGCGTCCTCTACTATATAACCCGA 239
Query 328 CCCTTGTATCTTCCTCCTTTCGTAGCTCAGATCCTCTGTGGATTATTATTTAGCCCAAGT 387
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 CCCTTTTATCTTCCTCCTTTCGTAGCTCAAATCCTCTGTGGATTATTATTTAGCCCAAGT 299
Query 388 GTGCTCGGGAACACACGTTTCATAATCGCACATGTATTCCCCTACAGATTCACAATGGTT 447
||||| |||||||||| ||||||| || | ||||||||||||||||||||||||||||||
Sbjct 300 GTGCTTGGGAACACACCTTTCATAGTCACCCATGTATTCCCCTACAGATTCACAATGGTT 359
Query 448 CTTGAGACATTCGCTAACTTAGCTCTCGTCTACAACATCTTCCTCCTTGGTCTAGGGATG 507
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 CTTGAGACATTCGCAAACTTAGCTCTTGTCTACAACATCTTCCTCCTTGGTCTAGGGATG 419
Query 508 GACCTGAGGATGGTGCGGATCACCGAGCTCAAACCGGTCATCATTGCTTTTACAGGGCTT 567
|||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||
Sbjct 420 GACCTGAGGATGGTGCGGATCACCGAGCTCAAACCGGTCATCATCGCCTTTGCGGGGCTT 479
Query 568 CTTGTTGCTTTACCGGTTGGTGCCTTTCTTTACTATCTCCCGGGAAATGGCCATCCAGAC 627
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTGTTGCTTTACCTGTTGGTGCCTTTCTTTACTATCTCCCGGGAAATGGCCATCCAGAC 539
Query 628 AAGATCATCTCTGGTTGCGTCTTCTGGTCTGTCGCGCTAGCCTGTACCAACTTCCCTGAC 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGATCATCTCTGGTTGCGTCTTCTGGTCTGTCGCGCTAGCCTGTACCAACTTCCCTGAC 599
Query 688 CTTGCAAGGATCCTTGCGGATCTTAAGCTGTTGCGGTCCGATATGGGTCGTACGGCTATG 747
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 600 CTGGCAAGGATCCTTGCGGATCTTAAGCTTTTGCGGTCCGATATGGGCCGTACGGCCATG 659
Query 748 TGTGCAGCCATTGTCACTGATTTGTGCACATGGGTCCTCCTTGTTTTTGGGTTTGCTTCT 807
|||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 660 TGTGCAGCCATTATCACTGATTTGTGCACATGGGTCCTCCTCGTTTTTGGGTTCGCTTCT 719
Query 808 TTTAGCAAATCAGGGACATGGAACAAAATGATGCCGTTCGTGATAATCACCACCGCAATC 867
||||||||| ||||||||||||||||| | ||||||||||||||| || ||||||||||
Sbjct 720 TTTAGCAAAGCAGGGACATGGAACAAATTTATGCCGTTCGTGATAGTCGTCACCGCAATC 779
Query 868 TTCGTCCTCCTCTGCATCTTTGTGATCCGTCCGGGAATTGCATGGATCTTCGCGAAGACC 927
||||||||||||||||| |||||||||||||||||||| |||||||||||| | ||||||
Sbjct 780 TTCGTCCTCCTCTGCATATTTGTGATCCGTCCGGGAATAGCATGGATCTTCTCCAAGACC 839
Query 928 GTGAAGGCAGGTCACGTCGGAGACACTCACGTTTGGTTCATTTTAGGAGGTGTGGTCCTA 987
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 GTGAAGGCAGGTCACGTCGGAGACACCCACGTTTGGTTCATTTTAGGAGGTGTGGTCCTA 899
Query 988 TGCGGCCTGATTACGGACGCATGCGGGGTCCACTCCATAACCGGGGCGTTCCTGTTCGGT 1047
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 TGCGGCCTGATCACAGACGCATGCGGGGTCCACTCCATAACCGGGGCATTCCTGTTCGGT 959
Query 1048 CTCTCCATTCCGCACGACCACATCATACGTAACATGATCGAGGAGAAGCTCCATGACTTC 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTCTCCATTCCGCACGACCACATCATACGTAACATGATCGAGGAGAAGCTCCATGACTTC 1019
Query 1108 CTTTCCGGGATCCTTATGCCTCTCTTCTACATCATTTGTGGGTTGCGAGCAGATATTGGT 1167
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1020 CTCTCCGGGATCCTTATGCCTCTCTTCTACATCATTTGTGGGTTACGAGCAGATATTGGT 1079
Query 1168 TTCATGCTCCAGTTTACTGACAAGTTCATGATGGTTGTAGTCATCTGCTCTTCCTTCTTA 1227
||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1080 TTCATGCTCGACTACACTGACAAGTTCATGATGGTTGTAGTCATTTGCTCTTCCTTCTTA 1139
Query 1228 GTAAAGATCGTGACTACCGTAATCACCTCTTTATTTATGCATATACCTATGCGTGACGCA 1287
|||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 1140 GTAAAGATCGTGACTACCGTGGTCACCTCTTTATTCATGCATATGCCTATGCGTGACGCA 1199
Query 1288 TTCGCTATAGGAGCCCTTATGAACACCAAGGGAACTTTATCGCTCGTCGTTCTTAATGCT 1347
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1200 TTCGCTATCGGAGCCCTTATGAACACCAAGGGAACTTTATCGCTGGTCGTTCTTAATGCT 1259
Query 1348 GGTCGCGATACTAAGGCGCTGGATAGTCCGATGTATACTCATATGACGATCGCGCTTCTA 1407
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1260 GGTCGCGATACTAAGGCGCTGGATAGTCCAATGTATACTCATATGACGATCGCGCTTCTA 1319
Query 1408 GTGATGTCACTAGTCGTCGAGCCTCTTCTCGCGTTTGCATACAAGCCCAAGAAAAAACTT 1467
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1320 GTGATGTCACTAGTCGTCGAGCCTCTTCTCGCGGTTGCATACAAGCCCAAGAAAAAACTT 1379
Query 1468 GCTCATTACAAGCACCGTACGGTTCAAAAGATCAAAGGAGAAACAGAGTTGCGCGTCTTA 1527
| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1380 GTTCATTACAAGTACCGTACGGTCCAAAAGATCAAAGGAGAAACAGAGTTTCGCGTCTTA 1439
Query 1528 GCTTGCGTCCATGTACTCCCCAATGTCTCTGGGATCACAAATCTCTTACAAGTCTCAAAC 1587
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1440 GCTTGCGTCCATATACTCCCCAATGTCTCTGGGATCACCAATCTCTTACAAGTCTCAAAC 1499
Query 1588 GCAACCAAACAATCACCTCTCAGCGTTTTCGCCATTCACCTCGTGGAGCTCACCGGTCGA 1647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CCAACCAAACAATCACCTCTCAGCGTTTTCGCCATTCACCTCGTGGAGCTCACCGGTCGA 1559
Query 1648 ACCACGGCCTCTCTGCTAATCATGAACGACGAATGCAAACCAAAAGCTAACTTCTCGGAC 1707
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 ACCACGGCCTCGCTGCTAATCATGAACGACGAATGCAAACCAAAAGCTAACTTCTCGGAC 1619
Query 1708 AGAGTCAGAGCAGAGTCCGATCAAATCGCTGAGACCTTCGAAGCTATGGAAGTCAACAAC 1767
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AGAGTCAGAGCAGAGTCCGACCAAATCGCTGAGACCTTCGAAGCTATGGAAGTCAACAAC 1679
Query 1768 GACGCAATGACGGTTCAGACCATCACCGCGGTCTCTCCTTACGCAACCATGCACGAAGAC 1827
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1680 GACGCAATGACGGTTCAGACCATCACCGCAGTCTCTCCTTACGCAACCATGCACGAAGAT 1739
Query 1828 ATCTGCGTGTTAGCCGAGGACAAGCGAGTTTGTTTCATCATATTGCCTTACCACAAACAC 1887
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ATCTGCGCGTTAGCCGAGGACAAGCGAGTTTGTTTCATCATATTGCCTTACCACAAACAC 1799
Query 1888 TTGACACCGGACGGTCGGATGGGAGAAGGAAACTCTTCTCACGCAGAAATTAACCAAAAC 1947
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1800 TTGACACCGGACGGTCGGATGGGAGAAGGAAACTCTTCTCACGCTGAAATTAACCAAAAC 1859
Query 1948 GTTTTGAGCCACGCCCCTTGCTCGGTCGGGATTTTGGTGGACCGTGGCATGGCCATGGTC 2007
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1860 GTTTTGAGCCACGCCCCTTGCTCGGTCGGGATTTTAGTGGACCGTGGTATGGCCATGGTC 1919
Query 2008 CGGTCTGAGTCGTTCCGTGGTGAATCAATGAAAAGAGAAGTCGCCATGCTCTTCGTCGGT 2067
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 1920 CGGTCTGAGTCGTTCCGTGGTGAAGCAATGAAAAGAGAAGTCGCAATGCTCTTCGTGGGT 1979
Query 2068 GGTCCAGACGACCGCGAGGCGTTATCATACGCTTGGCGAATGGTCGGACAACACGTGATT 2127
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1980 GGTCCAGACGACCGCGAGGCGTTATCATACGCCTGGCGAATGGTCGGACAACACGTGATT 2039
Query 2128 AAACTCACTGTGGTAAGATTCGTCCCAGGACGCGAAGCTCTAATCTCATCCGGGAAAGTT 2187
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 2040 AAACTCACTGTGGTAAGATTCGTCCCTGGACGCGAAGCTCTAATCTCGTCCGGGAAAGTT 2099
Query 2188 GCAGCGGAGTACGAGAGGGAGAAACAAGTCGACGATGAATGCATCTACGAATTTAATTTC 2247
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2100 GCAGCGGAGTACGAGAGGGAGAAACAAGTCGACGATGAGTGCATCTACGAATTTAATTTC 2159
Query 2248 AAGACAATGAATGATTCTTCCGTTAAATATATAGAGAAAGTGGTCAACGATGGTCAAGAC 2307
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2160 AAGACAATGAATGATTCTTCCGTTAAATATATCGAAAAAGTGGTCAACGATGGTCAAGAC 2219
Query 2308 ACGATAGCTACGATCAGAGAAATGGAAGACAACAATTCTTATGATCTTTACGTTGTGGGA 2367
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2220 ACGATCTCTACGATCAGAGAAATGGAAGACAACAATTCTTATGATCTTTACGTTGTCGGA 2279
Query 2368 AGAGGATATAACTCAGATTCTCCGGTGACTGCCGGTTTAAACGATTGGAGCAGTAGTCCT 2427
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 AGAGGATATAACTCAGAAACTCCGGTGACTGCCGGTTTAAACGATTGGAGCAGTAGTCCT 2339
Query 2428 GAGCTAGGCACAATAGGGGACACATTAGCTTCGTCGAATTTCACAATGCATGCTTCGGTA 2487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2340 GAGCTAGGCACAATAGGGGACACATTAGCTTCGTCGAATTTCACAATGCATGCTTCGGTA 2399
Query 2488 TTAGTCATTCAACAATACTCTGCCACTAAAAGACAAGCTGCAGTCACAGCAGCCGCCGCA 2547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2400 TTAGTCATTCAACAATACTCTGCCACTAAAAGACAAGCTGCAGTCACAGCAGCCGCCGCA 2459
Query 2548 ACAACCGTTATGGGAGCGGTCGCCGGTGTTACAGGTAACAATCTAGAATCCGCTGGTGGT 2607
||||||||| ||||||||||||| |||| ||| | |||||||| |||| ||| |||||||
Sbjct 2460 ACAACCGTTGTGGGAGCGGTCGCTGGTGCTACCGTTAACAATCAAGAACCCGTTGGTGGT 2519
Query 2608 GATGCTAAGATGACTCGTGATGCTCATGAGCCATTTATGAAGTCTATGTATGAAGACGAA 2667
| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2520 GGGGCTAAGACGCCTCGTGATGCT---GAGCCATTTATGAAGTCTATGTATGAAGACGAA 2576
Query 2668 GATGAAGATGATGAAGAGGATCATCAATATGGAATTCATAGGTAATGAGTTTTATACGTA 2727
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2577 GATGAAGATGATGAAGAAGATCATCAATATGGAATTCATAGGTAATGAGTTTTATACATA 2636
Query 2728 TATG 2731
||||
Sbjct 2637 TATG 2640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107262129920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5