BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05590.1 Length=2131 Score E Sequences producing significant alignments: (Bits) Value Ahg470561 jgi|Araly1|470561|fgenesh2_kg.1__515__AT1G05590.1 3016 0.0 > Ahg470561 jgi|Araly1|470561|fgenesh2_kg.1__515__AT1G05590.1 Length=1921 Score = 3016 bits (1633), Expect = 0.0 Identities = 1822/1912 (95%), Gaps = 18/1912 (1%) Strand=Plus/Plus Query 146 GCTTCCGTGAATGACAAATTGCTAAATCTAA-GGATTGATTTCAAGAACAAGTCATGCTA 204 |||||||||||||||||||| ||| | ||| ||||||| ||||||||||| |||||| Sbjct 23 GCTTCCGTGAATGACAAATTACTACTTTTAAGGGATTGA-TTCAAGAACAAACCATGCTT 81 Query 205 ACTCTTTCCAAGTTTCATGTGATACTAATCCCAATACTCTTCTTCATTACGCTTCTTTCG 264 ||||||||| ||||||||||| | | | || |||||||||||||||||||||||||| Sbjct 82 ACTCTTTCCGAGTTTCATGTG--A-T-A--CCTTTACTCTTCTTCATTACGCTTCTTTCG 135 Query 265 CCATTGTTCTCCATTGCTCTACCTATCAACATTTGGCCAAAGCCGAGATTTCTCTCATGG 324 |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 136 CCATTGCTCTCCACTGCTATACCTATCAACATTTGGCCAAAGCCGAGATTTCTCTCATGG 195 Query 325 CCTCAACATAAAGCCATTGCACTCTCTCCAAATTTCACTATCCTTGCCCCTGAACACCAA 384 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 196 CCTCAACATAAAGCCATTGCCCTCTCTCCAAATTTCACCATCCTTGCCCCTGAACACCAA 255 Query 385 TACCTTTCGGCCTCTGTAACACGGTATCACAACCTGATCCGTTCTGAGAATTACTCGCCT 444 ||||| || |||||||||||||| |||| |||||||||||| |||||||||||||||||| Sbjct 256 TACCTCTCTGCCTCTGTAACACGTTATCTCAACCTGATCCGCTCTGAGAATTACTCGCCT 315 Query 445 CTCATTAGCTATCCTGTCAAACTTATGAAAAGATACACCTTGAGGAACCTTGTAGTCACT 504 ||||||| | ||||||||||||||| |||| | ||||||||||||||||||||||||||| Sbjct 316 CTCATTAACCATCCTGTCAAACTTACGAAAGGTTACACCTTGAGGAACCTTGTAGTCACT 375 Query 505 GTTACCGATTTTTCTCTTCCGCTTCACCACGGTGTTGATGAGTCTTACAAACTCTCCATC 564 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 376 GTTACCGATCTTTCTCTTCCGCTTCACCACGGTGTTGATGAGTCTTACAACCTCTCCATC 435 Query 565 CCCATTGGCAGC-TTCTCCGCGCACTTGTTAGCTCATTCGGCTTGGGGAGCTATGCGTGG 623 |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 436 CCCATTGGCAGCGTT-TCCGCGCACTTGTTGGCTCATTCGGCTTGGGGAGCTATGCGTGG 494 Query 624 CCTTGAGACATTCTCTCAGATGATTTGGGGAACATCTCCTGATTTGTGCTTACCCGTTGG 683 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 495 CCTTGAGACATTTTCTCAGATGATTTGGGGAACATCTCCTGATTTGTGCTTACCAGTTGG 554 Query 684 AATTTATATTCAGGATTCTCCTCTGTTTGGCCATAGAGGTGTTTTGCTCGATACATCGAG 743 ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 555 AATTTCTATTCAGGATTCTCCTTTGTTTGGCCATAGAGGTGTTTTGCTCGATACATCAAG 614 Query 744 GAATTACTATGGAGTAGATGATATAATGAGGACTATTAAGGCCATGAGTGCAAACAAACT 803 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 615 GAATTACTATGGAGTAGATGATATAATGAGGACAATTAAGGCCATGAGTGCAAACAAACT 674 Query 804 CAATGTGTTCCATTGGCATATCACTGATTCACAATCTTTTCCACTGGTGCTTCCTTCTGA 863 ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| || Sbjct 675 CAATGTGTTCCATTGGCATATTACTGATTCACAATCTTTTCCATTAGTGCTTCCTTCCGA 734 Query 864 ACCTTCACTTGCTGCAAAAGGATCTCT-TGGACCAGACATGGTATACACTCCCGAGGATG 922 ||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||| Sbjct 735 ACCTTCACTCGCTGCAAAGGGATCT-TATGGACCAGACATGGTATACACTCCCGAGGATG 793 Query 923 TCTCAAAGATTGTTCAGTATGGTTTTGAGCATGGTGTTAGAGTACTTCCTGAAATAGACA 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 TCTCAAAGATTGTTCAGTATGGTTTTGAGCATGGTGTTAGAGTACTTCCTGAAATAGACA 853 Query 983 CTCCTGGTCATACAGGATCATGGGGAGAAGCTTACCCGGAAATTGTGACATGTGCCAATA 1042 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 854 CTCCTGGCCATACAGGATCATGGGGAGAAGCGTACCCGGAAATTGTGACATGTGCCAATA 913 Query 1043 TGTTCTGGTGGCCTGCTGGAAAAAGTTGGGAAGAGCGGTTAGCTAGTGAACCTGGGACTG 1102 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 914 TGTTCTGGTGGCCTGCTGGAAAAAGTTGGGACGAGCGGTTAGCTAGTGAACCTGGGACTG 973 Query 1103 GTCAGCTTAA-CCCTTTGAGTCCTAAAACATATGAAGTTGTTAAAAACGTCATACAAGAT 1161 |||||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 974 GTCAGCTTAATCCC-TTGAGTGCTAAAACATATGAAGTTGTTAAAAACGTCATAGAAGAT 1032 Query 1162 ATCGTTAATCAATTTCCAGAATCTTTCTTTCATGGAGGTGGAGATGAAGTTATCCCAGGC 1221 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 GTCGTTAAGCAATTTCCAGAATCTTTCTTTCATGGAGGTGGAGATGAAGTTATCCCAGGC 1092 Query 1222 TGTTGGAAAACCGATCCTGCCATCAATTCTTTCTTGTCCTCTGGTGGAACACTAAGCCAG 1281 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 1093 TGTTGGAAAACCGATCCTGCAATCATTTCTTTCTTGTCCTCTGGTGGAACACTAAGCCAG 1152 Query 1282 CTTCTTGAAAAGTACATAAACTCGACATTACCTTACATCGTGTCACAGAACCGCACAGTT 1341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1153 CTTCTTGAAAAGTACATAAACTCGACATTACCTTACATCGTGTCACAGAACCGCACAGTT 1212 Query 1342 GTTTACTGGGAAGATGTTCTGTTGGATGCACAAATCAAGGCGGATCCATC-TGTTCTTCC 1400 |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| || Sbjct 1213 GTTTACTGGGAAGATGTTCTGTTGGATGCACAAATCAAGGTGGATCCATCAT-TTCTACC 1271 Query 1401 TAAAGAGCACACAATCTTACAGACTTGGAATAACGGTCCGGAGAACACAAAGAGAATCGT 1460 ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| Sbjct 1272 TAAAGAGCACACAATCTTACAGACTTGGAATAACGGTCCTGCGAATACAAAGAGAATCGT 1331 Query 1461 AGCTGCTGGTTACAGAGTAATTGTCTCTTCATCAGAGTTCTACTACTTAGACTGTGGTCA 1520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1332 AGCTGCTGGTTACAGAGTAATTGTCTCTTCATCAGAGTTCTACTACTTAGACTGTGGTCA 1391 Query 1521 CGGCGGGTTTCTAGGGAATGATAGTATATATGATCAGAAAGAAAGCGGTGGCGGGTCTTG 1580 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| Sbjct 1392 CGGCGGGTTTCTAGGGAATGATAGTATATATGATCAGCAAGGAAGCGGTGGCGGCTCTTG 1451 Query 1581 GTGTGCACCATTTAAGACGTGGCAGAGCATATACAACTATGATATAGCTGATGGTTTGCT 1640 |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1452 GTGTGCACCATTCAAGACGTGGCAGAGCATATACAACTATGATATAACCGATGGTTTGCT 1511 Query 1641 CAATGAGGAAGAGAGGAAGCTGGTGCTAGGAGGAGAGGTTGCATTGTGGTCAGAGCAAGC 1700 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1512 CGATGAGGAAGAGAGGAAGCTGGTGCTAGGAGGAGAGGTTGCGTTGTGGTCAGAGCAAGC 1571 Query 1701 TGACTCGACGGTTTTAGACTCACGTCTTTGGCCACGTGCCTCTGCGTTGGCGGAGAGCTT 1760 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1572 TGACTCGACGGTTTTAGACTCACGTCTTTGGCCACGTGCCTCTGCGTTTGCGGAGAGCTT 1631 Query 1761 GTGGTCAGGGAATAGAGACGAGAGAGGTGTTAAGAGATGTGGTGAAGCCGTGGACCGTTT 1820 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1632 GTGGTCAGGGAATAGAGACGAGAGAGGTGTTAAGAGATGTGGTGAAGCCGTGGACCGGTT 1691 Query 1821 AAACCTGTGGAGGTATAGGATGGTTAAGAGAGGGATTGGAGCTGAACCTATCCAACCATT 1880 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1692 AAACCTGTGGAGGTATAGGATGGTGAAGAGAGGGATTGGAGCTGAACCTATCCAACCATT 1751 Query 1881 GTGGTGTTTGAAGAATCCTGGAATGTGTAATACAGTCCATGGTGCTCTTCAAGATCAATA 1940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1752 GTGGTGTTTGAAGAATCCTGGAATGTGTAATACAGTCCATGGTGCTCTTCAAGATCAATA 1811 Query 1941 AAAACAGATAGTTTCGAAATTGGATCCGAGTCAAAGAAAGCATAAACATGCTCTTGATCA 2000 |||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1812 AAAAGAGAAAGTTTCGAAATTGGATCCGAGTCAAAGAAAGCAGAAACATGCTCTTGATCA 1871 Query 2001 GGCTCTTTTGATTGTTGTATACATACTTTGCTTTGTAGTTGTGGGTTGTAAT 2052 ||||||||||||||||||| | | |||| ||||||||||||||||||||| Sbjct 1872 GGCTCTTTTGATTGTTGTA--CTTTGTTTGTTTTGTAGTTGTGGGTTGTAAT 1921 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80179965725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5