BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05590.1
Length=2131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470561 jgi|Araly1|470561|fgenesh2_kg.1__515__AT1G05590.1 3016 0.0
> Ahg470561 jgi|Araly1|470561|fgenesh2_kg.1__515__AT1G05590.1
Length=1921
Score = 3016 bits (1633), Expect = 0.0
Identities = 1822/1912 (95%), Gaps = 18/1912 (1%)
Strand=Plus/Plus
Query 146 GCTTCCGTGAATGACAAATTGCTAAATCTAA-GGATTGATTTCAAGAACAAGTCATGCTA 204
|||||||||||||||||||| ||| | ||| ||||||| ||||||||||| ||||||
Sbjct 23 GCTTCCGTGAATGACAAATTACTACTTTTAAGGGATTGA-TTCAAGAACAAACCATGCTT 81
Query 205 ACTCTTTCCAAGTTTCATGTGATACTAATCCCAATACTCTTCTTCATTACGCTTCTTTCG 264
||||||||| ||||||||||| | | | || ||||||||||||||||||||||||||
Sbjct 82 ACTCTTTCCGAGTTTCATGTG--A-T-A--CCTTTACTCTTCTTCATTACGCTTCTTTCG 135
Query 265 CCATTGTTCTCCATTGCTCTACCTATCAACATTTGGCCAAAGCCGAGATTTCTCTCATGG 324
|||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CCATTGCTCTCCACTGCTATACCTATCAACATTTGGCCAAAGCCGAGATTTCTCTCATGG 195
Query 325 CCTCAACATAAAGCCATTGCACTCTCTCCAAATTTCACTATCCTTGCCCCTGAACACCAA 384
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 196 CCTCAACATAAAGCCATTGCCCTCTCTCCAAATTTCACCATCCTTGCCCCTGAACACCAA 255
Query 385 TACCTTTCGGCCTCTGTAACACGGTATCACAACCTGATCCGTTCTGAGAATTACTCGCCT 444
||||| || |||||||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 256 TACCTCTCTGCCTCTGTAACACGTTATCTCAACCTGATCCGCTCTGAGAATTACTCGCCT 315
Query 445 CTCATTAGCTATCCTGTCAAACTTATGAAAAGATACACCTTGAGGAACCTTGTAGTCACT 504
||||||| | ||||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 316 CTCATTAACCATCCTGTCAAACTTACGAAAGGTTACACCTTGAGGAACCTTGTAGTCACT 375
Query 505 GTTACCGATTTTTCTCTTCCGCTTCACCACGGTGTTGATGAGTCTTACAAACTCTCCATC 564
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 376 GTTACCGATCTTTCTCTTCCGCTTCACCACGGTGTTGATGAGTCTTACAACCTCTCCATC 435
Query 565 CCCATTGGCAGC-TTCTCCGCGCACTTGTTAGCTCATTCGGCTTGGGGAGCTATGCGTGG 623
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 436 CCCATTGGCAGCGTT-TCCGCGCACTTGTTGGCTCATTCGGCTTGGGGAGCTATGCGTGG 494
Query 624 CCTTGAGACATTCTCTCAGATGATTTGGGGAACATCTCCTGATTTGTGCTTACCCGTTGG 683
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 495 CCTTGAGACATTTTCTCAGATGATTTGGGGAACATCTCCTGATTTGTGCTTACCAGTTGG 554
Query 684 AATTTATATTCAGGATTCTCCTCTGTTTGGCCATAGAGGTGTTTTGCTCGATACATCGAG 743
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 555 AATTTCTATTCAGGATTCTCCTTTGTTTGGCCATAGAGGTGTTTTGCTCGATACATCAAG 614
Query 744 GAATTACTATGGAGTAGATGATATAATGAGGACTATTAAGGCCATGAGTGCAAACAAACT 803
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 615 GAATTACTATGGAGTAGATGATATAATGAGGACAATTAAGGCCATGAGTGCAAACAAACT 674
Query 804 CAATGTGTTCCATTGGCATATCACTGATTCACAATCTTTTCCACTGGTGCTTCCTTCTGA 863
||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||
Sbjct 675 CAATGTGTTCCATTGGCATATTACTGATTCACAATCTTTTCCATTAGTGCTTCCTTCCGA 734
Query 864 ACCTTCACTTGCTGCAAAAGGATCTCT-TGGACCAGACATGGTATACACTCCCGAGGATG 922
||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 735 ACCTTCACTCGCTGCAAAGGGATCT-TATGGACCAGACATGGTATACACTCCCGAGGATG 793
Query 923 TCTCAAAGATTGTTCAGTATGGTTTTGAGCATGGTGTTAGAGTACTTCCTGAAATAGACA 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TCTCAAAGATTGTTCAGTATGGTTTTGAGCATGGTGTTAGAGTACTTCCTGAAATAGACA 853
Query 983 CTCCTGGTCATACAGGATCATGGGGAGAAGCTTACCCGGAAATTGTGACATGTGCCAATA 1042
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 854 CTCCTGGCCATACAGGATCATGGGGAGAAGCGTACCCGGAAATTGTGACATGTGCCAATA 913
Query 1043 TGTTCTGGTGGCCTGCTGGAAAAAGTTGGGAAGAGCGGTTAGCTAGTGAACCTGGGACTG 1102
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 914 TGTTCTGGTGGCCTGCTGGAAAAAGTTGGGACGAGCGGTTAGCTAGTGAACCTGGGACTG 973
Query 1103 GTCAGCTTAA-CCCTTTGAGTCCTAAAACATATGAAGTTGTTAAAAACGTCATACAAGAT 1161
|||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 974 GTCAGCTTAATCCC-TTGAGTGCTAAAACATATGAAGTTGTTAAAAACGTCATAGAAGAT 1032
Query 1162 ATCGTTAATCAATTTCCAGAATCTTTCTTTCATGGAGGTGGAGATGAAGTTATCCCAGGC 1221
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GTCGTTAAGCAATTTCCAGAATCTTTCTTTCATGGAGGTGGAGATGAAGTTATCCCAGGC 1092
Query 1222 TGTTGGAAAACCGATCCTGCCATCAATTCTTTCTTGTCCTCTGGTGGAACACTAAGCCAG 1281
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1093 TGTTGGAAAACCGATCCTGCAATCATTTCTTTCTTGTCCTCTGGTGGAACACTAAGCCAG 1152
Query 1282 CTTCTTGAAAAGTACATAAACTCGACATTACCTTACATCGTGTCACAGAACCGCACAGTT 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CTTCTTGAAAAGTACATAAACTCGACATTACCTTACATCGTGTCACAGAACCGCACAGTT 1212
Query 1342 GTTTACTGGGAAGATGTTCTGTTGGATGCACAAATCAAGGCGGATCCATC-TGTTCTTCC 1400
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||
Sbjct 1213 GTTTACTGGGAAGATGTTCTGTTGGATGCACAAATCAAGGTGGATCCATCAT-TTCTACC 1271
Query 1401 TAAAGAGCACACAATCTTACAGACTTGGAATAACGGTCCGGAGAACACAAAGAGAATCGT 1460
||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 1272 TAAAGAGCACACAATCTTACAGACTTGGAATAACGGTCCTGCGAATACAAAGAGAATCGT 1331
Query 1461 AGCTGCTGGTTACAGAGTAATTGTCTCTTCATCAGAGTTCTACTACTTAGACTGTGGTCA 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 AGCTGCTGGTTACAGAGTAATTGTCTCTTCATCAGAGTTCTACTACTTAGACTGTGGTCA 1391
Query 1521 CGGCGGGTTTCTAGGGAATGATAGTATATATGATCAGAAAGAAAGCGGTGGCGGGTCTTG 1580
||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||
Sbjct 1392 CGGCGGGTTTCTAGGGAATGATAGTATATATGATCAGCAAGGAAGCGGTGGCGGCTCTTG 1451
Query 1581 GTGTGCACCATTTAAGACGTGGCAGAGCATATACAACTATGATATAGCTGATGGTTTGCT 1640
|||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1452 GTGTGCACCATTCAAGACGTGGCAGAGCATATACAACTATGATATAACCGATGGTTTGCT 1511
Query 1641 CAATGAGGAAGAGAGGAAGCTGGTGCTAGGAGGAGAGGTTGCATTGTGGTCAGAGCAAGC 1700
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1512 CGATGAGGAAGAGAGGAAGCTGGTGCTAGGAGGAGAGGTTGCGTTGTGGTCAGAGCAAGC 1571
Query 1701 TGACTCGACGGTTTTAGACTCACGTCTTTGGCCACGTGCCTCTGCGTTGGCGGAGAGCTT 1760
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1572 TGACTCGACGGTTTTAGACTCACGTCTTTGGCCACGTGCCTCTGCGTTTGCGGAGAGCTT 1631
Query 1761 GTGGTCAGGGAATAGAGACGAGAGAGGTGTTAAGAGATGTGGTGAAGCCGTGGACCGTTT 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1632 GTGGTCAGGGAATAGAGACGAGAGAGGTGTTAAGAGATGTGGTGAAGCCGTGGACCGGTT 1691
Query 1821 AAACCTGTGGAGGTATAGGATGGTTAAGAGAGGGATTGGAGCTGAACCTATCCAACCATT 1880
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1692 AAACCTGTGGAGGTATAGGATGGTGAAGAGAGGGATTGGAGCTGAACCTATCCAACCATT 1751
Query 1881 GTGGTGTTTGAAGAATCCTGGAATGTGTAATACAGTCCATGGTGCTCTTCAAGATCAATA 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 GTGGTGTTTGAAGAATCCTGGAATGTGTAATACAGTCCATGGTGCTCTTCAAGATCAATA 1811
Query 1941 AAAACAGATAGTTTCGAAATTGGATCCGAGTCAAAGAAAGCATAAACATGCTCTTGATCA 2000
|||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1812 AAAAGAGAAAGTTTCGAAATTGGATCCGAGTCAAAGAAAGCAGAAACATGCTCTTGATCA 1871
Query 2001 GGCTCTTTTGATTGTTGTATACATACTTTGCTTTGTAGTTGTGGGTTGTAAT 2052
||||||||||||||||||| | | |||| |||||||||||||||||||||
Sbjct 1872 GGCTCTTTTGATTGTTGTA--CTTTGTTTGTTTTGTAGTTGTGGGTTGTAAT 1921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80179965725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5