BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05610.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470563 jgi|Araly1|470563|fgenesh2_kg.1__517__AT1G05610.1 2278 0.0
> Ahg470563 jgi|Araly1|470563|fgenesh2_kg.1__517__AT1G05610.1
Length=1475
Score = 2278 bits (1233), Expect = 0.0
Identities = 1400/1479 (95%), Gaps = 18/1479 (1%)
Strand=Plus/Plus
Query 1 ATGCAGATTTCTTCTTCTTCTTTTATTACCAAATTTACCAATCTCCATATGGTAAGATCG 60
||||||||||| |||||||| || |||| ||||||||||||||| ||| | ||||||||
Sbjct 1 ATGCAGATTTCGTCTTCTTC--TT-TTACTAAATTTACCAATCTCTATACGATAAGATCG 57
Query 61 ACTAGTGATCATCATCAATGGAGACATAACTATAACTTGAAGCAGC---T--TT------ 109
| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 58 AGTAGTGATCATCATCAATGGAGACATAACTATAACTTGAAGCAGCTTTTCGTTCCAAGC 117
Query 110 TCAT-TCCAAACCTCTCTGTTTCAAACTCTCAGCACCTTCCTTTGAACCAGAGTGTTGCG 168
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 TCATGTCCAAACCTCTCTGTTTCAAACTTTCAGCACCTTCCTTTGAACCAGAGTGTTGCG 177
Query 169 GCCATTGTGTTCGGAGGAGGATCAGATTCTGAGCTTTATCCACTTACCAAAACAAGATCC 228
||||| ||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 178 GCCATAGTGTTTGGAGGAGGATCAGATACTGAGCTTTATCCACTGACCAAAACAAGATCC 237
Query 229 AAAGGAGCAATCCCTATTGCAGCAAACTATAGACTTATTGATGCAGTCATCAGTAATTGC 288
|||||||||||||| |||||||||||||| |||| ||| ||||||||||| || ||||||
Sbjct 238 AAAGGAGCAATCCCCATTGCAGCAAACTACAGACATATCGATGCAGTCATTAGCAATTGC 297
Query 289 ATCAACAGTGGCATCACCAAGATCTATGCAATCACTCAGTTTAATTCCACTTCTCTCAAT 348
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATCAACAGTGACATCACCAAGATCTATGCAATCACTCAGTTTAATTCCACTTCTCTCAAT 357
Query 349 TCACATCTCTCCAAAGCTTACAGTGGATTTGGACTCGGAAAAGACAGATTCGTTGAAGTC 408
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 TCACATCTCTCTAAAGCTTACAGTGGATTTGGACTCGGAAAAGACAGATTTGTTGAAGTC 417
Query 409 ATTGCCGCTTATCAGAGCCTAGAAGATCAAGGATGGTTTCAGGGAACTGCTGATGCGATA 468
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATTGCCGCTTATCAGAGCCTGGAAGATCAAGGATGGTTTCAGGGAACTGCTGATGCGATA 477
Query 469 AGAAGATGCTTGTGGGTATTTGAAGAGTTTCCAGTTACAGAGTTCTTGGTTCTTCCTGGG 528
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 AGAAGATGCTTGTGGGTATTTGAAGAGTTTCCAGTGACAGAGTTCTTGGTTCTTCCTGGG 537
Query 529 CATCATCTATACAAAATGGATTATAAGATGCTAATCGAAGATCATAGAAGAAGCAGAGCG 588
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 538 CATCATCTCTACAAAATGGATTATAAGACGCTAATCGAAGATCATAGAAGAAGCAGAGCG 597
Query 589 GATATAACCATTGTTGGACTAAGCTCTGTTACAGACCATGACTTTGGTTTCGGTTTCATG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GATATAACCATTGTTGGACTAAGCTCTGTTACAGACCATGACTTTGGTTTCGGTTTCATG 657
Query 649 GAAGTTGATTCCACAAATGCT-GTCACTAGATTCACTATCAAGGGTCAACAAGATTTAAT 707
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 658 GAAGTTGATTCCACAAAT-CTTGTCACTAGATTCACTATCAAGGGTCAACAAGATTTGAT 716
Query 708 CTCTGTGGCGAACAGAACAGCGACAAGAAGTGATGGAACGTCTTCTTGCTCTGTCCCAAG 767
|||||||| |||||||||| | ||||| ||||| |||||||||||| |||||||||||||
Sbjct 717 CTCTGTGGAGAACAGAACAACAACAAGGAGTGAAGGAACGTCTTCTCGCTCTGTCCCAAG 776
Query 768 CGCAGGAATTTACGTGATCGGTCGAGAACAGATGGTGAAGCTTCTGAGAGAATGTTTAAT 827
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 777 CGCAGGGATTTACGTGATTGGTCGAGAACAGATGGTGAAGCTTCTGAGAGAATGTTTGAT 836
Query 828 AAAATCGAAAGACTTGGCCAGCGAAATCATTCCTGGTGCGATCTCTGAAGGAATGAAGGT 887
|||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 837 AAAAGCAAAAGACTTGGCCAGCGAAATCATTCCTGGTGCAATCTCTGAAGGAATGAAGGT 896
Query 888 GAAAGCTCATATGTTTGATGGATATTGGGAAGATGTGAGGAGCATTGGAGCTTACTATAG 947
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 897 GAAAGCTCATATGTTTGATGGATATTGGGAAGATGTGAAGAGCGTTGGAGCTTACTATAG 956
Query 948 AGCTAACATGGAGAGTATTAAGAGTTACAGATTCTACGACAGACAATGTCCTCTGTACAC 1007
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 957 AGCTAACATGGAGAGTATTAAGAGTTATAGATTCTATGACAGACAATGTCCTCTGTACAC 1016
Query 1008 AATGCCTCGGTGTTTGCCTCCAAGCTCCATGAGTGTAGCTGTAATAACCAACAGTATTAT 1067
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1017 AATGCCTCGGTGTTTGCCTCCAAGCTCCATGAGTGAAGCTGTAATAACCAACAGTATTAT 1076
Query 1068 CGGAGACGGGTGCATTCTAGATAAATGTGTCATCAGAGGATCGGTGGTTGGAATGAGAAC 1127
||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1077 CGGAGACGGTTGCATTCTCGATAGATGTGTCATTAGAGGATCGGTGGTTGGAATGAGAAC 1136
Query 1128 AAGAATCGCTGATGAAGTGATTGTAGAGGATTCGATCATTGTCGGTTCTGATATTTATga 1187
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1137 AAGAATCGCTGATGAAGTGATTGTAGAAGATTCAATCATCGTCGGTTCTGATATTTATGA 1196
Query 1188 gatggaagaagatgtgagaagaaaagggaaggagaagaagatagagatTCGAATAGGGAT 1247
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GATGGAAGAAGATGAGAGAAGAAAAGGGAAGGAGAAGAAGATAGAGATTCGAATAGGGAT 1256
Query 1248 CGGTGAAAAGAGTCGAATAAGACGAGCCATTGTTGATAAAAATGCCAGGATTGGTAAAAA 1307
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1257 CGGTGAAAAGAGTCGAATAAGAAGAGCCATTGTTGATAAAAATGCCAGGATTGGTAAAAA 1316
Query 1308 CGTTATGATAATCAACAGAGACAATGTTGAAGAAGGAAACCGAGAAGCTCAAGGATACGT 1367
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1317 CGTTATGATTATAAACAGAGACAATGTTGAAGAAGGAAACCGAGAAGCTGAAGGATACGT 1376
Query 1368 AATAAGAGAAGGAATCATTATCATACTTCGAAACGCAGTGATCCCGAACGACTCCATCCT 1427
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1377 TATAAGAGAAGGAATCATTATCATACTTCGAAACGCAGTGATCCCAAATGACTCCATCCT 1436
Query 1428 CTGAtt-tttttCCTATTTTACAAAATCCATCATTTTTC 1465
|||| |||||||||||||| ||||||| |||||||||
Sbjct 1437 CTGAAAATTTTTCCTATTTTATAAAATCCTTCATTTTTC 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5