BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05615.1
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910245 jgi|Araly1|910245|Al_scaffold_0001_499 632 0.0
> Ahg910245 jgi|Araly1|910245|Al_scaffold_0001_499
Length=519
Score = 632 bits (342), Expect = 0.0
Identities = 463/521 (89%), Gaps = 9/521 (2%)
Strand=Plus/Plus
Query 1 ATGGGT-GCTATTCATGAT-GAGCCATTCACTGCCTGTGGAGACGAAACAGAGTGTTTTG 58
|||||| | |||||||| | |||||| |||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGGTAG-TATTCATG-TGGAGCCACTCACTGCCTGTGGAGACGAAACAGAGTGTTATG 58
Query 59 GAGGCAATAGAGAGGGAAGCCAGAGTTTTCATTCAAGTTCCACTAAGGAAGAGAACCTTG 118
||||||||||||||||||| |||||||||||||||| |||||| || |||||||||||||
Sbjct 59 GAGGCAATAGAGAGGGAAGACAGAGTTTTCATTCAATTTCCACGAAAGAAGAGAACCTTG 118
Query 119 AGGATTCCTATCTCTA--CC-TAGTGCACCAGAGGAGTATGAGCATCTTCTTCTGGGACG 175
|||||||||||||||| || | | || | | | || |||| ||||||||||| |||
Sbjct 119 AGGATTCCTATCTCTACTCCTTCTTATACTACTGCACTAGGAGCCTCTTCTTCTGGAACG 178
Query 176 AGAGAGCCAACACCGGAGTGGCTGGTGCGGTTGATGAGGGTAAAATCATAGATTTTGAAT 235
|||||||| || ||| ||||||||||| |||||||||||| ||||||| ||||||||| |
Sbjct 179 AGAGAGCCGACGCCGCAGTGGCTGGTGAGGTTGATGAGGGCAAAATCAAAGATTTTGATT 238
Query 236 TCTTGAACCCCGAC-GAAAAAAGGATCATAGAAGAACATGCCAATAAGGAACGTGAAGAA 294
|||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 TCTTGAGCCCCG-CTGAAAAAAGGATCATAGAAGAACATGCCAATAATGAACGTGAAGAA 297
Query 295 GGAGTAGACGTGATACTCGTAAATTTTGATCGAAGGGAATATATGTTGAATTTGAGGAGA 354
|||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||
Sbjct 298 GGAGTAGACGTGATACTCGTGGCTTCTGATCTAAGGGAATTTAAGTTGAATTTGAGGAGA 357
Query 355 TGGAACATGGGGACCTCTCCTCTATACATTTTGGTTTCAGGGCGGTATAATGTGGTCAAA 414
||| ||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 358 TGGGTCATGGGGACCTCTCCTCTATACATTTTGGTTTCAGGGTGGAATAAGGTGGTCAAA 417
Query 415 GGATGCCGTCTAAAGGAAGGCAATGAGATTCGCATCTGGTCTTTCCACTTTGATGACCAG 474
| |||||||||| ||||||| ||| |||||||| |||||||||||||| || ||||||||
Sbjct 418 GAATGCCGTCTAGAGGAAGGTAATAAGATTCGCCTCTGGTCTTTCCACGTTAATGACCAG 477
Query 475 CTCAATCTCGCTATGGTTCCTCTTACGCCAACTGAGTCCGG 515
||| || ||||||||||||||||| ||||||||||||||||
Sbjct 478 CTCTATATCGCTATGGTTCCTCTTTCGCCAACTGAGTCCGG 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18887016555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5