BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05620.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470564 jgi|Araly1|470564|fgenesh2_kg.1__518__AT1G05620.1 1823 0.0
> Ahg470564 jgi|Araly1|470564|fgenesh2_kg.1__518__AT1G05620.1
Length=1125
Score = 1823 bits (987), Expect = 0.0
Identities = 1081/1127 (96%), Gaps = 4/1127 (0%)
Strand=Plus/Plus
Query 74 tttttCCGGCACTTGGGT-CCTTCAAAGTCTCCGCCTTCTGCCGTGTTGAAGTTCGATGG 132
||||||||||| |||||| |||| |||||||||||||| |||||||||||||| ||||||
Sbjct 1 TTTTTCCGGCATTTGGGTCCCTT-AAAGTCTCCGCCTT-TGCCGTGTTGAAGTCCGATGG 58
Query 133 CGATAGGAGACCGCAAGAAGATTATCATCGATACTGATCCTGGAATCGATGATGCAATGG 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 59 CGATAGGAGACCGCAAGAAGATTATCATCGATACTGATCCTGGAATCGATGATGCCATGG 118
Query 193 CGATATTCGTAGCTTTAAATTCACCTGAAGTTGATGTCATTGGCCTCACTACTATCTTTG 252
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 119 CGATATTCGTGGCTTTAAATTCACCAGAAGTTGATGTCATTGGCCTCACTACTATCTTTG 178
Query 253 GAAACGTGTATACCACTCTCGCCACTCGAAACGCCTTGCATTTGTTGGAGGTTGCGGGTA 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAAACGTGTATACCACTCTCGCCACTCGAAACGCCTTGCATTTGTTGGAGGTTGCGGGTA 238
Query 313 GGACCGATATTCCGGTGGCTGAAGGAACACATAAAACCTTCTTGAACGATACGAAGCTTC 372
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGACCGATATTCCTGTGGCTGAAGGAACACATAAAACCTTCTTGAACGATACGAAGCTTC 298
Query 373 GAATAGCTGACTTTGTTCATGGAAAAGATGGGCTTGGCAACCAAAACTTCCCTCCACCTA 432
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 GAATTGCTGACTTTGTTCATGGAAAAGATGGGCTTGGCAACCAAAATTTCCCTCCACCTA 358
Query 433 AAGGAAAACCAATTGAAAAGTCTGGACCTGAGTTTTTAGTTGAACAAGCAAAGCTTTGCC 492
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 359 AAGGAAAACCAATTGAAAAGTCTGGACCTGAGTTTTTAGTTGAACAAGCAAAACTTTACC 418
Query 493 CTGGTGAAATCACGGTTGTTGCTTTGGGACCACTAACAAATCTCGCGTTGGCTGTTCAGC 552
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 419 CTGGTGAAATCACGGTTGTTGCTTTGGGACCACTAACAAATATCGCGTTGGCTATTCAGC 478
Query 553 TTGATCCAGAGTTTTCGAAAAATGTCGGACAAATTGTTCTTCTTGGTGGAGCATTTGCAG 612
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 479 TTGATCCAGATTTTTCGAAAAATGTCGGACAAATTGTTCTTCTTGGTGGTGCATTCGCAG 538
Query 613 TAAACGGAAATGTAAATCCAGCTTCGGAAGCTAATATTTTTGGCGATCCCGAAGCTGCAG 672
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 TAAACGGAAATGTAAATCCAGCTTCGGAAGCTAATATTTTTGGCGATCCAGAAGCTGCAG 598
Query 673 ATATTGTGTTCACATGTGGGGCCGATATAATTGCTGTGGGAATCAATGTGACCCATCAAG 732
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 ATATTGTGTTCACATGTGGGGCCGATATAATTGCTGTGGGGATCAATGTGACCCATCAAG 658
Query 733 TTATTATGACAGCTGATGACAAGGACAAACTAGCATCATCGAAGGGGAAATTAGCTCAAT 792
|||||||||||||| |||||||||||||||| |||||||| || || ||||| |||||||
Sbjct 659 TTATTATGACAGCTAATGACAAGGACAAACTGGCATCATCTAACGGAAAATTTGCTCAAT 718
Query 793 ATCTCTGTAAAATCCTTGATGTGTACTATGATTATCATCTCACGGCTTACGAAATCAAAG 852
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 ATCTCTGTAAAGTCCTTGATGTATACTATGATTATCATCTCACGGCTTACGAAATCAAAG 778
Query 853 GTGTGTACCTTCATGATCCTGCGACGATCCTTGCGGCTTTCCTTCCTTCTCTATTCACTT 912
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGTCTACCTTCATGATCCTGCGACGATCCTTGCGGCTTTCCTTCCTTCTCTATTCACTT 838
Query 913 ATACAGAAGGAGTTGCTAGAGTGCAGACAAGTGGTATCACTAGGGGACTCACTTTACTGT 972
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 839 ATACAGAAGGAGTAGCTAGAGTGCAGACAAGCGGTATCACTAGGGGACTTACTTTACTGT 898
Query 973 ACAACAATCTTAAGAGGTTTGAGGAAGCGAACGAGTGGTCAGACAAACCAACGGTAAAAG 1032
||||||||| |||| ||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct 899 ACAACAATCCAAAGAAGTTTGAGGAAGAGAATGAGTGGTCAGACAAACCATCGGTAAAAG 958
Query 1033 TGGCAGTGACGGTTGATGCTCCTGCAGTCGTGAAGCTCATAATGGATAGGCTTATGGAGT 1092
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 959 TGGCAGTGACGGTTGATGCTCCTGCGGTCGTGAAGCTCATAATGGATAGGCTTATGGAGT 1018
Query 1093 CTTAAACCATCTTGGGTCGTTAATTAGTTATCTCTTTCTCTTTGATGTTTCACT-ATTGC 1151
|||| |||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1019 CTTAGACCATCTTGGCTCGTTAATTAGTTATCTCTTTCTCTTTGATGTTTCATTTATTGT 1078
Query 1152 GAGCCATTTCTCTTGTTAAAAATAAGGCTCCTCTTGCTGCattattt 1198
||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1079 GAGCCATTTCTCTTGTTTAAAATAAGGCTCTTCTTGCTGCATTATTT 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5