BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05650.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919269 jgi|Araly1|919269|scaffold_100550.1 1877 0.0
Ahg919270 jgi|Araly1|919270|scaffold_100551.1 1696 0.0
> Ahg919269 jgi|Araly1|919269|scaffold_100550.1
Length=1226
Score = 1877 bits (1016), Expect = 0.0
Identities = 1125/1179 (95%), Gaps = 2/1179 (0%)
Strand=Plus/Plus
Query 1 ATGACAAAATCAGCTATAACATTTCCACTTATCTTCACACTTCTCACCTTCATCGATGTC 60
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 22 ATGACAAAACCAGCTATAACATTTCCACTTATCTTCACACTTCTAACCTTCATCGATGTC 81
Query 61 TCGAGCAGCGCCTCCATTGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGTC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 TCGAGCAGCGCCTCCATCGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGTC 141
Query 121 ACCGATTCCACAGCAGCATTCCTAAAGGCATGGCAAGGGGCTTGTGGCTCGGCAGCATCA 180
||||||||||| ||||||||||| |||||||||||||||||||||||||||| | | |||
Sbjct 142 ACCGATTCCACCGCAGCATTCCTCAAGGCATGGCAAGGGGCTTGTGGCTCGGTATCTTCA 201
Query 181 GCCACGGTGGTGGTCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGGCCA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 202 GCCACGGTGGTGGTCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGACCA 261
Query 241 TGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTATAGG 300
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 262 TGCAAGAGCAAAATCACATTTCAAGTGGCCGGAACCATCGTTGCTCCGGAAGATTACAGG 321
Query 301 ACCTTTGGCAATTCCGGTTCCTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGTC 360
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 322 ACCTTTGGCAATTCCGGTTACTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGTT 381
Query 361 GGTGGGACTTTTGACGCTCGAGGTAGTGGGTTCTGGTCTTGCCGGAAATCTGGCCAGAAT 420
||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 382 GGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGAAT 441
Query 421 TGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCCGCAAAAGACGTGATCATAAGTGGA 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 442 TGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTGGA 501
Query 481 GTGAAATCGATGAACAGCCAGGTTAGCCATATGACCCTCAACGGTTGCACCAATGTGGCC 540
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 502 GTGAAATCCATGAACAGCCAGGTCAGCCATATGACCCTCAACGGTTGCACCAATGTGGTC 561
Query 541 GTCCGTAACATTAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTCACCGTT 600
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 GTCCGTAACGTCAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTCACCGTT 621
Query 601 CAGTTCTCCACTGGAGTCACATTAACCGGAAGCACCGTTCAGACCGGAGACGATTGTGTT 660
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 622 CAATTCTCCACTGGAGTCACATTCACCGGAAGCACCGTTCAGACCGGAGACGATTGTGTT 681
Query 661 GCTATCGGTCAGGGGACCCGCAACTTCCTAATTTCCAAGCTTGCTTGTGGCCCAGGTCAC 720
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 682 GCTATCGGTCAGGGGACCCGCAACTTCCTTATTTCCAAGCTTGCTTGTGGCCCAGGTCAC 741
Query 721 GGGGTTAGCATCGGGAGTTTGGCAAAGCAGTTAAACGAAGACGGAGTAGAGAACGTGACA 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 GGGGTTAGCATCGGGAGCTTGGCAAAGCAGTTAAACGAAGACGGAGTAGAGAACGTGACA 801
Query 781 GTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGGATAAAGTCATGGGCGAGG 840
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 802 GTATCGAGTTCGGTATTCACCGGAACACAAAACGGCGTGAGGATAAAGTCATGGGCGAGG 861
Query 841 CCGAGTACCGGATTCGTTAGAAACGTCTTCTTTCAAAATCTAATCATGAGGAACGTCCAA 900
|||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||
Sbjct 862 CCGAGTACCGGATTCGTTAGGAACGTCTTCTTCCAAAACCTAATCATGAAGAACGTCCAA 921
Query 901 AACCCTATCATAATCGACCAAAACTATTGTCCGTCCAACCAAGGTTGCCCTACTGAGCAT 960
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 922 AACCCTATCATAATCGACCAAAACTACTGTCCCTCCAAGCAAGGTTGCCCTACTGAGCAT 981
Query 961 TCGGGGGTGAAGATAACCCAAGTGACGTACAAGAACATACAAGGAACTTCGGCGACGCAG 1020
|| ||||||||||||| ||||||||| || ||||||||||||||||| |||||||| |||
Sbjct 982 TCAGGGGTGAAGATAAGCCAAGTGACCTATAAGAACATACAAGGAACGTCGGCGACACAG 1041
Query 1021 GAAGCAATGAAGCTGG-TGTGTAGCAAGAGCAATCCATGCACGGGAATCACATTACAAGA 1079
|||||||||| |||| | ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1042 CAAGCAATGAACCTGGCT-TGTAGCAAGAGCAATCCGTGCACAGGAATCACATTACAGGA 1100
Query 1080 CATAAAGCTTACTTACAACAAAGGAACTCCTGCTACTTCCTTGTGCTTCAATGCTGTTGG 1139
||| ||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 1101 CATTAAGCTTATTTACAACAAAGGAACCCCTGCTACTTCCTTCTGTTTCAATGCTGTTGG 1160
Query 1140 GAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAA 1178
|||||||||||||||||||||||||||||||||||||||
Sbjct 1161 GAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAA 1199
> Ahg919270 jgi|Araly1|919270|scaffold_100551.1
Length=1227
Score = 1696 bits (918), Expect = 0.0
Identities = 1100/1189 (93%), Gaps = 8/1189 (1%)
Strand=Plus/Plus
Query 1 ATGACAAAATCAGCTATAACATTTCCACTTATCTTCACACTTCTCACCTTCATCGATGTC 60
||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 22 ATGACAAAACCAGCTATAACATTTCCCCTTCTCTTCACACTTCTCACCTTCATCGATGTC 81
Query 61 TCGAGCAGCGCCTCCATTGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGTC 120
||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 82 TCGAGCACCGCCTCCAACGTTTTCAACGTCGTTAGCTTCGGGGCCAAACCGGACGGAGTC 141
Query 121 ACCGATTCCACAGCAGCATTCCTAAAGGCATGGCAAGGGGCTTGTGGCTCGGCAGCATCA 180
|||||||| || ||||||||||| |||||||||||| ||||||||||||||||| | |||
Sbjct 142 ACCGATTCTACCGCAGCATTCCTCAAGGCATGGCAACGGGCTTGTGGCTCGGCATCTTCA 201
Query 181 GCCACGGTGGTGG-TCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGGCC 239
||||||||||||| |||| || ||||||||| | ||||||||||||||||||||||||||
Sbjct 202 GCCACGGTGGTGGTTCCCAAC-GGGACATTTCTATTGAAGGTAATAACGTTTGGAGGGCC 260
Query 240 ATGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTATAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 261 ATGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTACAG 320
Query 300 GACCTTTGGCAATTCCGGTTCCTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGT 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 GACCTTTGGCAATTCCGGTTACTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGT 380
Query 360 CGGTGGGACTTTTGACGCTCGAGGTAGTGGGTTCTGGTCTTGCCGGAAATCTGGCCAGAA 419
|||||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 381 CGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGAA 440
Query 420 TTGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCCGCAAAAGACGTGATCATAAGTGG 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 441 TTGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTGG 500
Query 480 AGTGAAATCGATGAACAGCCAGGTTAGCCATATGACCCTCAACGGTTGCACCAATGTGGC 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 501 AGTGAAATCGATGAACAGCCAGGTCAGCCATATGACCCTCAACGGTTGCACCAATGTAGT 560
Query 540 CGTCCGTAACATTAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTC-ACCG 598
|||||||||| | | ||| |||||||||||| ||||||||||||| ||||| ||| || |
Sbjct 561 CGTCCGTAACGTCAAGCTAGTGGCTCCCGGAAACAGCCCAAACACCGACGGTTTCCAC-G 619
Query 599 TTCAGTTCTCCACTGGAGTCACATTAACCGGAAGCACCGTTCAGACCGGAGACGATTGTG 658
| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 620 TCCAGCTCTCCACCGGAGTCACATTCACCGGAAGCACCGTTCAGACCGGAGACGATTGTG 679
Query 659 TTGCTATCGGTCAGGGGACCCGCAACTTCCTAATTTCCAAGCTTGCTTGTGGCCCAGGTC 718
| |||||||| | || |||||||||||||| || |||| |||||||||||||||||||
Sbjct 680 TAGCTATCGGCCCTGGTACCCGCAACTTCCTCATCACCAAACTTGCTTGTGGCCCAGGTC 739
Query 719 ACGGGGTTAGCATCGGGAGTTTGGCAAAGCAGTTAAACGAAGACGGAGTAGAGAACGTGA 778
||||||||||||| ||||| ||||| ||| | | |||||||||||||||||||||||||
Sbjct 740 ACGGGGTTAGCATTGGGAGCTTGGCGAAGGAACTGAACGAAGACGGAGTAGAGAACGTGA 799
Query 779 CAGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGGATAAAGTCATGGGCGA 838
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 800 CAGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGAATAAAGTCATGGGCGA 859
Query 839 GGCCGAGTACCGGATTCGTTAGAAACGTCTTCTTTCAAAATCTAATCATGAGGAACGTCC 898
||||||| |||||||||||||||||||||||||| ||| | ||| |||||| |||||||
Sbjct 860 GGCCGAGCACCGGATTCGTTAGAAACGTCTTCTTCCAAGACCTAGTCATGAAGAACGTCG 919
Query 899 AAAACCCTATCATAATCGACCAAAACTATTGTCCGT-C-CAACCAAGGTTGCCCTACTGA 956
||||||| |||||||||||||||||||||||||| | | || | |||||||||||| |||
Sbjct 920 AAAACCCAATCATAATCGACCAAAACTATTGTCC-TACTCA-CGAAGGTTGCCCTAATGA 977
Query 957 GCATTCGGGGGTGAAGATAACCCAAGTGACGTACAAGAACATACAAGGAACTTCGGCGAC 1016
| |||| ||||||||||||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct 978 GTATTCTGGGGTGAAGATAAGCCAAGTGACATATAAGAACATACAAGGAACGTCGGCGAC 1037
Query 1017 GCAGGAAGCAATGAAGCTGGTGTGTAGCAAGAGCAATCCATGCACGGGAATCACATTACA 1076
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1038 ACAGGAAGCAATGAAGCTGGTGTGTAGCAAGAGCAGTCCATGCACAGGAATCACATTACA 1097
Query 1077 AGACATAAAGCTTACTTACAACAAAGGAACTCCTGCTACTTCCTTGTGCTTCAATGCTGT 1136
||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1098 GGACATTAAGCTTATTTACAACAAAGGAACTCCTGCTACGTCCTTGTGTTTCAATGCTGT 1157
Query 1137 TGGGAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAATCGATGA 1185
|||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1158 TGGGAAAAGTCTTGGTGTTATTCAACCTACTAGTTGTCTAAACCGATGA 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5