BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05650.1 Length=1185 Score E Sequences producing significant alignments: (Bits) Value Ahg919269 jgi|Araly1|919269|scaffold_100550.1 1877 0.0 Ahg919270 jgi|Araly1|919270|scaffold_100551.1 1696 0.0 > Ahg919269 jgi|Araly1|919269|scaffold_100550.1 Length=1226 Score = 1877 bits (1016), Expect = 0.0 Identities = 1125/1179 (95%), Gaps = 2/1179 (0%) Strand=Plus/Plus Query 1 ATGACAAAATCAGCTATAACATTTCCACTTATCTTCACACTTCTCACCTTCATCGATGTC 60 ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 22 ATGACAAAACCAGCTATAACATTTCCACTTATCTTCACACTTCTAACCTTCATCGATGTC 81 Query 61 TCGAGCAGCGCCTCCATTGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGTC 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 82 TCGAGCAGCGCCTCCATCGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGTC 141 Query 121 ACCGATTCCACAGCAGCATTCCTAAAGGCATGGCAAGGGGCTTGTGGCTCGGCAGCATCA 180 ||||||||||| ||||||||||| |||||||||||||||||||||||||||| | | ||| Sbjct 142 ACCGATTCCACCGCAGCATTCCTCAAGGCATGGCAAGGGGCTTGTGGCTCGGTATCTTCA 201 Query 181 GCCACGGTGGTGGTCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGGCCA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 202 GCCACGGTGGTGGTCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGACCA 261 Query 241 TGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTATAGG 300 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| Sbjct 262 TGCAAGAGCAAAATCACATTTCAAGTGGCCGGAACCATCGTTGCTCCGGAAGATTACAGG 321 Query 301 ACCTTTGGCAATTCCGGTTCCTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGTC 360 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 322 ACCTTTGGCAATTCCGGTTACTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGTT 381 Query 361 GGTGGGACTTTTGACGCTCGAGGTAGTGGGTTCTGGTCTTGCCGGAAATCTGGCCAGAAT 420 ||||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||| Sbjct 382 GGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGAAT 441 Query 421 TGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCCGCAAAAGACGTGATCATAAGTGGA 480 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 442 TGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTGGA 501 Query 481 GTGAAATCGATGAACAGCCAGGTTAGCCATATGACCCTCAACGGTTGCACCAATGTGGCC 540 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 502 GTGAAATCCATGAACAGCCAGGTCAGCCATATGACCCTCAACGGTTGCACCAATGTGGTC 561 Query 541 GTCCGTAACATTAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTCACCGTT 600 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 562 GTCCGTAACGTCAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTCACCGTT 621 Query 601 CAGTTCTCCACTGGAGTCACATTAACCGGAAGCACCGTTCAGACCGGAGACGATTGTGTT 660 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 622 CAATTCTCCACTGGAGTCACATTCACCGGAAGCACCGTTCAGACCGGAGACGATTGTGTT 681 Query 661 GCTATCGGTCAGGGGACCCGCAACTTCCTAATTTCCAAGCTTGCTTGTGGCCCAGGTCAC 720 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 682 GCTATCGGTCAGGGGACCCGCAACTTCCTTATTTCCAAGCTTGCTTGTGGCCCAGGTCAC 741 Query 721 GGGGTTAGCATCGGGAGTTTGGCAAAGCAGTTAAACGAAGACGGAGTAGAGAACGTGACA 780 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 742 GGGGTTAGCATCGGGAGCTTGGCAAAGCAGTTAAACGAAGACGGAGTAGAGAACGTGACA 801 Query 781 GTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGGATAAAGTCATGGGCGAGG 840 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 802 GTATCGAGTTCGGTATTCACCGGAACACAAAACGGCGTGAGGATAAAGTCATGGGCGAGG 861 Query 841 CCGAGTACCGGATTCGTTAGAAACGTCTTCTTTCAAAATCTAATCATGAGGAACGTCCAA 900 |||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||| Sbjct 862 CCGAGTACCGGATTCGTTAGGAACGTCTTCTTCCAAAACCTAATCATGAAGAACGTCCAA 921 Query 901 AACCCTATCATAATCGACCAAAACTATTGTCCGTCCAACCAAGGTTGCCCTACTGAGCAT 960 |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 922 AACCCTATCATAATCGACCAAAACTACTGTCCCTCCAAGCAAGGTTGCCCTACTGAGCAT 981 Query 961 TCGGGGGTGAAGATAACCCAAGTGACGTACAAGAACATACAAGGAACTTCGGCGACGCAG 1020 || ||||||||||||| ||||||||| || ||||||||||||||||| |||||||| ||| Sbjct 982 TCAGGGGTGAAGATAAGCCAAGTGACCTATAAGAACATACAAGGAACGTCGGCGACACAG 1041 Query 1021 GAAGCAATGAAGCTGG-TGTGTAGCAAGAGCAATCCATGCACGGGAATCACATTACAAGA 1079 |||||||||| |||| | ||||||||||||||||| ||||| |||||||||||||| || Sbjct 1042 CAAGCAATGAACCTGGCT-TGTAGCAAGAGCAATCCGTGCACAGGAATCACATTACAGGA 1100 Query 1080 CATAAAGCTTACTTACAACAAAGGAACTCCTGCTACTTCCTTGTGCTTCAATGCTGTTGG 1139 ||| ||||||| ||||||||||||||| |||||||||||||| || |||||||||||||| Sbjct 1101 CATTAAGCTTATTTACAACAAAGGAACCCCTGCTACTTCCTTCTGTTTCAATGCTGTTGG 1160 Query 1140 GAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAA 1178 ||||||||||||||||||||||||||||||||||||||| Sbjct 1161 GAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAA 1199 > Ahg919270 jgi|Araly1|919270|scaffold_100551.1 Length=1227 Score = 1696 bits (918), Expect = 0.0 Identities = 1100/1189 (93%), Gaps = 8/1189 (1%) Strand=Plus/Plus Query 1 ATGACAAAATCAGCTATAACATTTCCACTTATCTTCACACTTCTCACCTTCATCGATGTC 60 ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 22 ATGACAAAACCAGCTATAACATTTCCCCTTCTCTTCACACTTCTCACCTTCATCGATGTC 81 Query 61 TCGAGCAGCGCCTCCATTGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGTC 120 ||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 82 TCGAGCACCGCCTCCAACGTTTTCAACGTCGTTAGCTTCGGGGCCAAACCGGACGGAGTC 141 Query 121 ACCGATTCCACAGCAGCATTCCTAAAGGCATGGCAAGGGGCTTGTGGCTCGGCAGCATCA 180 |||||||| || ||||||||||| |||||||||||| ||||||||||||||||| | ||| Sbjct 142 ACCGATTCTACCGCAGCATTCCTCAAGGCATGGCAACGGGCTTGTGGCTCGGCATCTTCA 201 Query 181 GCCACGGTGGTGG-TCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGGCC 239 ||||||||||||| |||| || ||||||||| | |||||||||||||||||||||||||| Sbjct 202 GCCACGGTGGTGGTTCCCAAC-GGGACATTTCTATTGAAGGTAATAACGTTTGGAGGGCC 260 Query 240 ATGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTATAG 299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 261 ATGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTACAG 320 Query 300 GACCTTTGGCAATTCCGGTTCCTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGT 359 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 321 GACCTTTGGCAATTCCGGTTACTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGT 380 Query 360 CGGTGGGACTTTTGACGCTCGAGGTAGTGGGTTCTGGTCTTGCCGGAAATCTGGCCAGAA 419 |||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||| Sbjct 381 CGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGAA 440 Query 420 TTGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCCGCAAAAGACGTGATCATAAGTGG 479 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 441 TTGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTGG 500 Query 480 AGTGAAATCGATGAACAGCCAGGTTAGCCATATGACCCTCAACGGTTGCACCAATGTGGC 539 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 501 AGTGAAATCGATGAACAGCCAGGTCAGCCATATGACCCTCAACGGTTGCACCAATGTAGT 560 Query 540 CGTCCGTAACATTAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTC-ACCG 598 |||||||||| | | ||| |||||||||||| ||||||||||||| ||||| ||| || | Sbjct 561 CGTCCGTAACGTCAAGCTAGTGGCTCCCGGAAACAGCCCAAACACCGACGGTTTCCAC-G 619 Query 599 TTCAGTTCTCCACTGGAGTCACATTAACCGGAAGCACCGTTCAGACCGGAGACGATTGTG 658 | ||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 620 TCCAGCTCTCCACCGGAGTCACATTCACCGGAAGCACCGTTCAGACCGGAGACGATTGTG 679 Query 659 TTGCTATCGGTCAGGGGACCCGCAACTTCCTAATTTCCAAGCTTGCTTGTGGCCCAGGTC 718 | |||||||| | || |||||||||||||| || |||| ||||||||||||||||||| Sbjct 680 TAGCTATCGGCCCTGGTACCCGCAACTTCCTCATCACCAAACTTGCTTGTGGCCCAGGTC 739 Query 719 ACGGGGTTAGCATCGGGAGTTTGGCAAAGCAGTTAAACGAAGACGGAGTAGAGAACGTGA 778 ||||||||||||| ||||| ||||| ||| | | ||||||||||||||||||||||||| Sbjct 740 ACGGGGTTAGCATTGGGAGCTTGGCGAAGGAACTGAACGAAGACGGAGTAGAGAACGTGA 799 Query 779 CAGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGGATAAAGTCATGGGCGA 838 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 800 CAGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGAATAAAGTCATGGGCGA 859 Query 839 GGCCGAGTACCGGATTCGTTAGAAACGTCTTCTTTCAAAATCTAATCATGAGGAACGTCC 898 ||||||| |||||||||||||||||||||||||| ||| | ||| |||||| ||||||| Sbjct 860 GGCCGAGCACCGGATTCGTTAGAAACGTCTTCTTCCAAGACCTAGTCATGAAGAACGTCG 919 Query 899 AAAACCCTATCATAATCGACCAAAACTATTGTCCGT-C-CAACCAAGGTTGCCCTACTGA 956 ||||||| |||||||||||||||||||||||||| | | || | |||||||||||| ||| Sbjct 920 AAAACCCAATCATAATCGACCAAAACTATTGTCC-TACTCA-CGAAGGTTGCCCTAATGA 977 Query 957 GCATTCGGGGGTGAAGATAACCCAAGTGACGTACAAGAACATACAAGGAACTTCGGCGAC 1016 | |||| ||||||||||||| ||||||||| || ||||||||||||||||| |||||||| Sbjct 978 GTATTCTGGGGTGAAGATAAGCCAAGTGACATATAAGAACATACAAGGAACGTCGGCGAC 1037 Query 1017 GCAGGAAGCAATGAAGCTGGTGTGTAGCAAGAGCAATCCATGCACGGGAATCACATTACA 1076 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1038 ACAGGAAGCAATGAAGCTGGTGTGTAGCAAGAGCAGTCCATGCACAGGAATCACATTACA 1097 Query 1077 AGACATAAAGCTTACTTACAACAAAGGAACTCCTGCTACTTCCTTGTGCTTCAATGCTGT 1136 ||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1098 GGACATTAAGCTTATTTACAACAAAGGAACTCCTGCTACGTCCTTGTGTTTCAATGCTGT 1157 Query 1137 TGGGAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAATCGATGA 1185 |||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 1158 TGGGAAAAGTCTTGGTGTTATTCAACCTACTAGTTGTCTAAACCGATGA 1206 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44222583720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5