BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05660.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919270 jgi|Araly1|919270|scaffold_100551.1 1940 0.0
Ahg919269 jgi|Araly1|919269|scaffold_100550.1 1676 0.0
> Ahg919270 jgi|Araly1|919270|scaffold_100551.1
Length=1227
Score = 1940 bits (1050), Expect = 0.0
Identities = 1141/1186 (96%), Gaps = 2/1186 (0%)
Strand=Plus/Plus
Query 1 ATGACAAAATCAGTTATAAGATTTTCCCTTCTCTTCACACTTCTCACCTTCATTGATGTC 60
||||||||| ||| ||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 22 ATGACAAAACCAGCTATAACATTTCCCCTTCTCTTCACACTTCTCACCTTCATCGATGTC 81
Query 61 TCGATTAGCGCCTCCAACGTTTTCAACGTCGTTAGCTTCGGTGCCAAACCGGACGGAGTC 120
|||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 82 TCGAGCACCGCCTCCAACGTTTTCAACGTCGTTAGCTTCGGGGCCAAACCGGACGGAGTC 141
Query 121 ACCGATTCTACCGGAGCATTCCTCAAGGCATGGCAAGGGGCTTGTGTCTCAGCATCTTCA 180
||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 142 ACCGATTCTACCGCAGCATTCCTCAAGGCATGGCAACGGGCTTGTGGCTCGGCATCTTCA 201
Query 181 GCCACGGTGGTGGTCCCCAAGGGGACATTTCTGTTGAAGGTAATAACGTTTGGAGGACCA 240
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 202 GCCACGGTGGTGGTTCCCAACGGGACATTTCTATTGAAGGTAATAACGTTTGGAGGGCCA 261
Query 241 TGCAAGAGCAAAATCACATTTCAAGTGGCTGGAACCGTCATTGCTCCGGAAGATTACAGG 300
||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 262 TGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTACAGG 321
Query 301 ACCTTTGGCAATTCTGGCTT-CTGGATTCTCTTCAATAAGGTTAACAGATTCTCACTGGT 359
|||||||||||||| || || ||||||||||||||| |||||||||||||||||||||||
Sbjct 322 ACCTTTGGCAATTCCGG-TTACTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGT 380
Query 360 CGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGAA 440
Query 420 TTGTCCTCCCGGTGTTAGATCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTGG 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TTGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTGG 500
Query 480 AGTGAAATCCATGAACAGCCAGGTCACCCATATGACCCTCAATGGTTGCACCAATGTGGT 539
||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||
Sbjct 501 AGTGAAATCGATGAACAGCCAGGTCAGCCATATGACCCTCAACGGTTGCACCAATGTAGT 560
Query 540 CGTCCGTAACGTCAAGCTAGTGGCTCCTGGAAACAGCCCAAACACCGACGGTTTCCACGT 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 561 CGTCCGTAACGTCAAGCTAGTGGCTCCCGGAAACAGCCCAAACACCGACGGTTTCCACGT 620
Query 600 TCAGCACTCCACCGGGGTCACATTCACCGGAAGCACCGTTCAGACCGGAGATGATTGTGT 659
|||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 621 CCAGCTCTCCACCGGAGTCACATTCACCGGAAGCACCGTTCAGACCGGAGACGATTGTGT 680
Query 660 TGCTATCGGCCCTGGTACCCGCAACCTCCTCATCACCAAACTTGCTTGTGGCCCGGGTCA 719
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 681 AGCTATCGGCCCTGGTACCCGCAACTTCCTCATCACCAAACTTGCTTGTGGCCCAGGTCA 740
Query 720 CGGGGTTAGCATAGGGAGCTTGGCGAAGGAACTGAAAGAAGACGGAGTAGAGAACGTGAC 779
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 741 CGGGGTTAGCATTGGGAGCTTGGCGAAGGAACTGAACGAAGACGGAGTAGAGAACGTGAC 800
Query 780 AGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGAATAAAGTCATGGGCGAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGAATAAAGTCATGGGCGAG 860
Query 840 GCCGAGTAACGGATTCGTTAGAACCGTCTTCTTCCAAGACCTAGTCATGAAGAACGTCGA 899
|||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 861 GCCGAGCACCGGATTCGTTAGAAACGTCTTCTTCCAAGACCTAGTCATGAAGAACGTCGA 920
Query 900 AAACCCAATCATAATCGACCAAAACTATTGTCCTACTCACGAAGGTTGCCCTAATGAGTA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AAACCCAATCATAATCGACCAAAACTATTGTCCTACTCACGAAGGTTGCCCTAATGAGTA 980
Query 960 TTCTGGGGTGAAGATAAGCCAAGTGACATATAAGAACATACAAGGAACGTCGGCGACACA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 TTCTGGGGTGAAGATAAGCCAAGTGACATATAAGAACATACAAGGAACGTCGGCGACACA 1040
Query 1020 GGAAGCAATGAAGCTGGTGTGTAGCAAGAGCAGTCCATGCACAGGAATCACATTACAGGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GGAAGCAATGAAGCTGGTGTGTAGCAAGAGCAGTCCATGCACAGGAATCACATTACAGGA 1100
Query 1080 CATTAAGCTTACTTACAACAAAGGAACTCCTGCTACTTCCTTCTGTTTCAATGCTGTTGG 1139
||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1101 CATTAAGCTTATTTACAACAAAGGAACTCCTGCTACGTCCTTGTGTTTCAATGCTGTTGG 1160
Query 1140 GAAAAGTCTTGGTGTTATTCAACCTACTAGTTGTCTAAACCGATGA 1185
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 GAAAAGTCTTGGTGTTATTCAACCTACTAGTTGTCTAAACCGATGA 1206
> Ahg919269 jgi|Araly1|919269|scaffold_100550.1
Length=1226
Score = 1676 bits (907), Expect = 0.0
Identities = 1099/1191 (92%), Gaps = 16/1191 (1%)
Strand=Plus/Plus
Query 1 ATGACAAAATCAGTTATAAGATTTTCC-CTTCTCTTCACACTTCTCACCTTCATTGATGT 59
||||||||| ||| ||||| | ||||| ||| ||||||||||||| |||||||| |||||
Sbjct 22 ATGACAAAACCAGCTATAACA-TTTCCACTTATCTTCACACTTCTAACCTTCATCGATGT 80
Query 60 CTCGATTAGCGCCTCCAACGTTTTCAACGTCGTTAGCTTCGGTGCCAAACCGGACGGAGT 119
||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 81 CTCGAGCAGCGCCTCCATCGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGT 140
Query 120 CACCGATTCTACCGGAGCATTCCTCAAGGCATGGCAAGGGGCTTGTGTCTCAGCATCTTC 179
||||||||| |||| |||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 141 CACCGATTCCACCGCAGCATTCCTCAAGGCATGGCAAGGGGCTTGTGGCTCGGTATCTTC 200
Query 180 AGCCACGGTGGTGGTCCCCAAGGGGACATTTCTGTTGAAGGTAATAACGTTTGGAGGACC 239
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 201 AGCCACGGTGGTGGTCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGACC 260
Query 240 ATGCAAGAGCAAAATCACATTTCAAGTGGCTGGAACCGTCATTGCTCCGGAAGATTACAG 299
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 261 ATGCAAGAGCAAAATCACATTTCAAGTGGCCGGAACCATCGTTGCTCCGGAAGATTACAG 320
Query 300 GACCTTTGGCAATTCTGGCTT-CTGGATTCTCTTCAATAAGGTTAACAGATTCTCACTGG 358
||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||
Sbjct 321 GACCTTTGGCAATTCCGG-TTACTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGG 379
Query 359 TCGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGA 418
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TTGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGA 439
Query 419 ATTGTCCTCCCGGTGTTAGATCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTG 478
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ATTGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTG 499
Query 479 GAGTGAAATCCATGAACAGCCAGGTCACCCATATGACCCTCAATGGTTGCACCAATGTGG 538
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 500 GAGTGAAATCCATGAACAGCCAGGTCAGCCATATGACCCTCAACGGTTGCACCAATGTGG 559
Query 539 TCGTCCGTAACGTCAAGCTAGTGGCTCCTGGAAACAGCCCAAACACCGACGGTTTCCAC- 597
||||||||||||||| ||| |||||||| ||| ||||||||||||| ||||| ||| ||
Sbjct 560 TCGTCCGTAACGTCAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTC-ACC 618
Query 598 GTTCAGCACTCCACCGGGGTCACATTCACCGGAAGCACCGTTCAGACCGGAGATGATTGT 657
||||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 619 GTTCAATTCTCCACTGGAGTCACATTCACCGGAAGCACCGTTCAGACCGGAGACGATTGT 678
Query 658 GTTGCTATCGGCCCTGGTACCCGCAACCTCCTCATCACCAAACTTGCTTGTGGCCCGGGT 717
||||||||||| | || ||||||||| |||| || |||| |||||||||||||| |||
Sbjct 679 GTTGCTATCGGTCAGGGGACCCGCAACTTCCTTATTTCCAAGCTTGCTTGTGGCCCAGGT 738
Query 718 CACGGGGTTAGCATAGGGAGCTTGGCGAAGGAACTGAAA-GAAGACGGAGTAGAGAACGT 776
|||||||||||||| ||||||||||| ||| | | ||| ||||||||||||||||||||
Sbjct 739 CACGGGGTTAGCATCGGGAGCTTGGCAAAGCAGTT-AAACGAAGACGGAGTAGAGAACGT 797
Query 777 GACAGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGAATAAAGTCATGGGC 836
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 798 GACAGTATCGAGTTCGGTATTCACCGGAACACAAAACGGCGTGAGGATAAAGTCATGGGC 857
Query 837 GAGGCCGAGTAACGGATTCGTTAG-AACCGTCTTCTTCCAAGACCTAGTCATGAAGAACG 895
||||||||||| |||||||||||| ||| |||||||||||| ||||| ||||||||||||
Sbjct 858 GAGGCCGAGTACCGGATTCGTTAGGAAC-GTCTTCTTCCAAAACCTAATCATGAAGAACG 916
Query 896 TCGAAAACCCAATCATAATCGACCAAAACTATTGTCCTACTC-ACG-AAGGTTGCCCTAA 953
|| ||||||| |||||||||||||||||||| ||||| ||| | | ||||||||||||
Sbjct 917 TCCAAAACCCTATCATAATCGACCAAAACTACTGTCC--CTCCAAGCAAGGTTGCCCTAC 974
Query 954 TGAGTATTCTGGGGTGAAGATAAGCCAAGTGACATATAAGAACATACAAGGAACGTCGGC 1013
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 975 TGAGCATTCAGGGGTGAAGATAAGCCAAGTGACCTATAAGAACATACAAGGAACGTCGGC 1034
Query 1014 GACACAGGAAGCAATGAAGCTGG-TGTGTAGCAAGAGCAGTCCATGCACAGGAATCACAT 1072
||||||| |||||||||| |||| | ||||||||||||| ||| ||||||||||||||||
Sbjct 1035 GACACAGCAAGCAATGAACCTGGCT-TGTAGCAAGAGCAATCCGTGCACAGGAATCACAT 1093
Query 1073 TACAGGACATTAAGCTTACTTACAACAAAGGAACTCCTGCTACTTCCTTCTGTTTCAATG 1132
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1094 TACAGGACATTAAGCTTATTTACAACAAAGGAACCCCTGCTACTTCCTTCTGTTTCAATG 1153
Query 1133 CTGTTGGGAAAAGTCTTGGTGTTATTCAACCTACTAGTTGTCTAAACCGAT 1183
|||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1154 CTGTTGGGAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAACAGAT 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5