BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05680.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470572 jgi|Araly1|470572|fgenesh2_kg.1__526__AT1G05680.1 2351 0.0
Ahg470571 jgi|Araly1|470571|fgenesh2_kg.1__525__AT1G05670.1 1581 0.0
> Ahg470572 jgi|Araly1|470572|fgenesh2_kg.1__526__AT1G05680.1
Length=1503
Score = 2351 bits (1273), Expect = 0.0
Identities = 1424/1496 (95%), Gaps = 13/1496 (1%)
Strand=Plus/Plus
Query 1 ACACAACAAAAACTAGAGTCAGTAACAACACAAG-ATTAAAAAGAAGGAGAAAATGAGAG 59
||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 1 ACACAACAAAAACTAGAGTCAGTAAAAACACAAGAATTAAAAAGAAGAAGAAAATGAGAG 60
Query 60 AAGGATCTCATCTTATCGTCTTGCCTTTCCCAGGACAAGGCCACATAACTCCAATGTCCC 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGGATCTCATCTTATCGTCCTGCCTTTCCCAGGACAAGGCCACATAACTCCAATGTCCC 120
Query 120 AGTTCTGCAAACGCTTAGCCTCAAAAGGTCTTAAGCTCACTCTGGTCCTCGTCTCCGACA 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 AGTTCTGCAAACGCTTAGCCTCAAAAGGTCTTAAGCTCACTCTTGTCCTCGTCTCCGACA 180
Query 180 AACCCTCTCCTCCATACAAAACAGAGCACGACTCAATCACTGTCTTCCCCATCTCCAACG 239
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 181 AACCCTCTCCTCCATACAAAACAGAGCACGACTCAATTACTGTCTTCCCCATCTCCAATG 240
Query 240 GCTTCCAAGAAGGCGAGGAACCATTACAAGACCTCGATGATTACATGGAAAGAGTAGAAA 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTTCCAAGAAGGCGAGGAGCCATTACAAGACCTCGATGATTACATGGAAAGAGTAGAAA 300
Query 300 CCAGCATCAAAAACACCTTACCGAAGTTGGTTGAAGACATGAAACTGTCGGGAAATCCAC 359
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 301 CCAGCATCAAAAACACCTTACCGAAGTTGATTGAAGACATGAAACAGTCGGGAAATCCTC 360
Query 360 CTAGGGCTATCGTGTACGACTCCACCATGCCATGGCTTCTTGATGTAGCTCATAGTTATG 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 CTAGGGCTATCGTGTACGACTCCACCATGCCGTGGCTTCTTGATGTAGCTCATAGTTATG 420
Query 420 GATTGAGCGGTGCCGTGTTTTTCACGCAACCTTGGCTTGTCACAGCTATTTACTACCATG 479
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTTGAGCGGTGCCGCGTTTTTCACGCAACCTTGGCTTGTCACAGCTATTTACTACCATG 480
Query 480 TTTTCAAGGGTTCGTTCTCTGTACCGTCTACAAAGTACGGTCACTCGACATTAGCATCTT 539
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 481 TTTTCAAGGGTTCGTTCTCTGTACCGTCTACAAAGTACGCTCACTCAACATTAGCATCAT 540
Query 540 TCCCTTCGTTCCCGATGCTGACTGCAAATGATTTGCCGTCTTTCCTCTGC-GAATCGTCC 598
||||||| ||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 541 TCCCTTCCTTCCCGATGCTGAATGCAAATGATTTGCCGTCTTTCCTCT-CTGAATCGTCC 599
Query 599 TCATACCCGAATATACTGAGGATTGTGGTGGATCAGCTCTCAAACATTGATCGAGTCGAC 658
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 600 TCATACCCGAATATACTAAAGATTGTGGTGGATCAGCTCTCAAACATTGATCGAGTAGAC 659
Query 659 ATAGTGTTGTGCAACACTTTCGATAAATTGGAGGAAAAGTTGTTGAAATGGGTCCAAAGC 718
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATAGTGTTGTGCAACACTTTCTATAAATTGGAGGAAAAGTTGTTGAAATGGGTCCAAAGC 719
Query 719 TTGTGGCCAGTCTTGAATATTGGACCAACGGTTCCATCGATGTATTTAGACAAACGACTG 778
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTGTGGCCTGTCTTGAACATAGGACCAACGGTTCCATCGATGTATTTAGACAAACGACTG 779
Query 779 TCTGAAGACAAGAACTACGGTTTTAGCCTCTTCAATGCGAAAGTCGCTGAATGCATGGAG 838
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 780 TCTGAAGACAAGAACTACGGTTTTAGCCTCTTCAATGCGAAAGTTGTTGAATGCATGGAG 839
Query 839 TGGCTAAACTCAAAGGAGCCTAATTCTGTTGTCTATTTATCATTCGGAAGTTTGGTGATT 898
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 TGGCTAAACTCAAAGCAGCCTAATTCTGTTGTCTATGTATCATTCGGAAGTTTGGTGATT 899
Query 899 CTAAAAGAAGATCAAATGTTGGAACTCGCTGCGGGTCTGAAACAGAGCGGACGTTTCTTT 958
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 900 CTAAAAGAAGATCAAATGTTGGAACTTGCTGCGGGTCTGAAACAGAGCGGATGTTTCTTT 959
Query 959 CTGTGGGTTGTGAGAGAGACAGAGACACACAAACTTCCAAGAAACTATGTCGAGGAAATC 1018
|||||||||| ||||||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct 960 TTGTGGGTTGTAAGAGAGACAGAGACAGACAAAATTCCAAGAAACTATGTAGAGGAAATC 1019
Query 1019 GGTGAAAAAGGACTTATTGTAAGCTGGAGTCCTCAGCTTGACGTACTTGCACATAAATCA 1078
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGTGAGAAAGGACTAATTGTAAGCTGGAGTCCTCAGCTTGACGTACTTGCACATAAATCA 1079
Query 1079 ATCGGTTGTTTCTTGACACACTGTGGATGGAACTCGACGTTAGAGGGATTGAGTTTGGGA 1138
|||||||||||||| || || |||||||||||||||| |||||| |||||||||||||||
Sbjct 1080 ATCGGTTGTTTCTTAACCCATTGTGGATGGAACTCGATGTTAGAAGGATTGAGTTTGGGA 1139
Query 1139 GTTCCAATGATTGGTATGCCACACTGGACTGATCAGCCCACGAATGCTAAGTTCATGCAG 1198
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1140 GTTCCAATGATTGGTATGCCACACTGGACTGATCAGCCCACAAATGCTAAGTTCATGGAG 1199
Query 1199 GATGTGTGGAAGGTTGGGGTAAGGGTTAAGGCAGAAGGTGATGGGTTTGTgagaagagaa 1258
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1200 GATGTGTGGAAGGTTGGGGTTAGGGTTAAGGCAGAAGATGATGGGTTTGTGAGAAGAGAA 1259
Query 1259 gagattatgagaagtgtggaagaagttatggagggagagaaagggaaagagattagaaag 1318
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAGATTGTGAGAAGTGTGGGAGAAGTTATGGAGGGAGAGAAAGGGAAAGAGATTAGAAAG 1319
Query 1319 aaTGCTGAGAAATGGAAAGTGTTGGCTCAAGAGGCAGTTTCTGAAGGAGGTAGCTCTGAT 1378
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AATGCTGAGAAGTGGAAAGTGTTGGCTCAAGAGGCAGTTTCTGAAGGAGGTAGCTCTGAT 1379
Query 1379 AAGAGCATCAATGAGTTTGTTTCTATGTTTTGTTGAATGATTTAAATTGATATGTTCAAA 1438
||||||||||||||||||||||||||||||| || ||| || |||| ||| | ||
Sbjct 1380 AAGAGCATCAATGAGTTTGTTTCTATGTTTTATT-AAT--TTG---TTGA-ATGATGGAA 1432
Query 1439 AGTACATCGTCTTTTGCA-AGTCCAATTGTAATTCTTGTTGTTGTTGTAGTAATAA 1493
| | |||||||||||||| | ||||||||| ||| ||||||| |||||||||||||
Sbjct 1433 ATTGCATCGTCTTTTGCATA-TCCAATTGTTATTGTTGTTGT-GTTGTAGTAATAA 1486
> Ahg470571 jgi|Araly1|470571|fgenesh2_kg.1__525__AT1G05670.1
Length=3500
Score = 1581 bits (856), Expect = 0.0
Identities = 1126/1258 (90%), Gaps = 11/1258 (1%)
Strand=Plus/Plus
Query 50 AAA-ATGAGAGAAGGATCTCATCTTATCGTCTTGCCTTTCCCAGGACAAGGCCACATAAC 108
||| |||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||||
Sbjct 2 AAAGATGAAAGAAGGATCTCATGTTATCGTTTTGCCTTTCCCAGCACAAGGCCACATAAC 61
Query 109 TCCAATGTCCCAGTTCTGCAAACGCTTAGCCTCAAAAGGTCTTAAGCTCACTCTGGTCCT 168
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 62 TCCAATGTCCCAATTCTGTAAACGCTTAGCCTCAAAAGGTCTTAAGCTCACTCTTGTCCT 121
Query 169 CGTCTCCGACAAACCCTCTCCTCCATACAAAACAGAGCACGACTCAATCACTGTCTTCCC 228
||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct 122 CGTTTCCGACAATCCCTCTCCGCCATACAAAACAGAGCACGACTCAATCGCTGTCGTCCC 181
Query 229 CATCTCCAACGGCTTCCAAGAAGGCGAGGAACCATTACAAGACCTCGATGATTACATGGA 288
||||||||| || ||| ||||||| ||||||| || ||||||||| ||||||||||||||
Sbjct 182 CATCTCCAATGGTTTCGAAGAAGGTGAGGAACGATCACAAGACCTAGATGATTACATGGA 241
Query 289 AAGAGTAGAAACCAGCATCAAAAACACCTTACCGAAGTTGGTTGAAGACATGAAACTGTC 348
|||||| ||| ||||||||||||||| |||||||||| || | |||||||||||||||||
Sbjct 242 AAGAGTGGAAGCCAGCATCAAAAACAGCTTACCGAAGCTGATAGAAGACATGAAACTGTC 301
Query 349 GGGAAATCCACCTAGGGCTATCGTGTACGACTCCACCATGCCATGGCTTCTTGATGTAGC 408
||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 302 GGGAAATCCTCCTAGGGCTCTCGTGTACGACTCCACCATGCCGTGGCTTCTTGATGTAGC 361
Query 409 TCATAGTTATGGATTGAGCGGTGCCGTGTTTTTCACGCAACCTTGGCTTGTCACAGCTAT 468
||||| |||||| |||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 362 TCATACTTATGGTTTGAGCGGTGCCGTGTTTTTCACGCAGCCTTGGATTGTCTCAGCTAT 421
Query 469 TTACTACCATGTTTTCAAGGGTTCGTTCTCTGTACCGTCTACAAAGTACGGTCACTCGAC 528
|||||| ||||||||||| || |||||||||||||||| |||||||||||||||||| ||
Sbjct 422 TTACTATCATGTTTTCAAAGGCTCGTTCTCTGTACCGTATACAAAGTACGGTCACTCAAC 481
Query 529 ATTAGCATCTTTCCCTTCGTTCCCGATGCTGACTGCAAATGATTTGCCGTCTTTCCTCTG 588
||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 482 GTTAGCATCTCTCCCTTCGTTCCCGATGCTAAATGCAAATGATTTGCCGTCTTTCCTCTG 541
Query 589 CGAATCGTCCTCATACCCGA-ATATACTGAGGATTGTGGTGGATCAGCTCTCAAACATTG 647
||||||||||| ||||| | ||||||| |||| |||| | |||||||||||||||||||
Sbjct 542 TGAATCGTCCTCTTACCC-ATATATACTAAGGACTGTGATCGATCAGCTCTCAAACATTG 600
Query 648 ATCGAGTCGACATAGTGTTGTGCAACACTTTCGATAAATTGGAGGAAAAGTTGTTGAAAT 707
||||||| || ||||| || |||||||| |||||||||||||| ||||||||| |||| |
Sbjct 601 ATCGAGTTGATATAGTTTTATGCAACACCTTCGATAAATTGGAAGAAAAGTTGCTGAAGT 660
Query 708 GGGTCCAAAGCTTGTGGCCAGTCTTGAATATTGGACCAACGGTTCCATCGATGTATTTAG 767
||||||||||| ||||||| ||| |||| || |||||||| |||||||| ||||||||||
Sbjct 661 GGGTCCAAAGCGTGTGGCCTGTCCTGAACATAGGACCAACTGTTCCATCAATGTATTTAG 720
Query 768 ACAAACGACTGTCTGAAGACAAGAACTACGGTTTTAGCCTCTTCAATGCGAAAGTCGCTG 827
| || |||||| |||||||||| |||||||| || ||||| ||| ||||||||||||||
Sbjct 721 ATAAGCGACTGCCTGAAGACAAAAACTACGGATTCAGCCTTTTCGGTGCGAAAGTCGCTG 780
Query 828 AATGCATGGAGTGGCTAAACTCAAAGGAGCCTAATTCTGTTGTCTATTTATCATTCGGAA 887
||||||||||||||||||| | |||| |||||| ||| ||||| ||| ||||||| || |
Sbjct 781 AATGCATGGAGTGGCTAAATTTAAAGCAGCCTAGTTCAGTTGTTTATGTATCATTTGGTA 840
Query 888 GTTTGGTGATTCTAAAAGAAGATCAAATGTTGGAACTCGCTGCGGGTCTGAAACAGAGCG 947
| |||||| ||||||||||||||||| || | |||||||| |||||||||||||||||||
Sbjct 841 GCTTGGTGGTTCTAAAAGAAGATCAACTGATAGAACTCGCGGCGGGTCTGAAACAGAGCG 900
Query 948 GACGTTTCTTTCTGTGGGTTGTGAGAGAGACAG--AGACACACAAACTTCCAAGAAA-CT 1004
| | ||||||| ||||||||||||||| | | | ||| | ||||||||||| |||| ||
Sbjct 901 GCCATTTCTTTTTGTGGGTTGTGAGAG-G-CGGGGAGAAAAACAAACTTCCA-GAAAACT 957
Query 1005 ATGTCGAGGAAATCGGTGAAAAAGGACTTATTGTAAGCTGGAGTCCTCAGCTTGACGTAC 1064
|| | |||||||| ||||| |||||||| || || ||||||||||| || ||||| || |
Sbjct 958 ATATAGAGGAAATTGGTGAGAAAGGACTGATCGTGAGCTGGAGTCCACAACTTGAAGTTC 1017
Query 1065 TTGCACATAAATCAATCGGTTGTTTCTTGACACACTGTGGATGGAACTCGACGTTAGAGG 1124
|| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1018 TTACACATAAATCGATCGGTTGTTTCTTGACACATTGTGGATGGAACTCGACGTTAGAGG 1077
Query 1125 GATTGAGTTTGGGAGTTCCAATGATTGGTATGCCACACTGGACTGATCAGCCCACGAATG 1184
|| |||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||
Sbjct 1078 GACTGAGTTTGGGAGTTCCAATGATTGGTATGCCACATTGGGCAGATCAGCCCACAAATG 1137
Query 1185 CTAAGTTCATGCAGGATGTGTGGAAGGTTGGGGTAAGGGTTAAGGCAGAA-GGTGATGGG 1243
||||||||||| ||||||||||||| |||||||| |||||||| ||| || |||||||||
Sbjct 1138 CTAAGTTCATGGAGGATGTGTGGAAAGTTGGGGTTAGGGTTAAAGCA-AACGGTGATGGG 1196
Query 1244 TTTGTgagaagagaagagattatgagaagtgtggaagaagttatggagggagagaaag 1301
|| |||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct 1197 TTCGTGAGAAGAGGAGAGATTGTGAGACGTGTGGGAGAAGTTATGGAGGGAGAGAAAG 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5