BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05690.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919273 jgi|Araly1|919273|scaffold_100554.1 1912 0.0
> Ahg919273 jgi|Araly1|919273|scaffold_100554.1
Length=1259
Score = 1912 bits (1035), Expect = 0.0
Identities = 1193/1268 (94%), Gaps = 16/1268 (1%)
Strand=Plus/Plus
Query 206 TTTTCAATTCGCGGGTTTGATTCCATAGCTTCTTCAGATCATACATTCTCGCAAGTGTTC 265
|||||||||| ||||||||||| || |||||||||||| |||||||||| |||||| ||
Sbjct 1 TTTTCAATTCTCGGGTTTGATTTGATGGCTTCTTCAGATGATACATTCTCACAAGTGATC 60
Query 266 GATA-CGG-G-AGTAGAAGAAGAAGAGTCTTTCTATGCTCCTGATCATGATGTCTTGACT 322
|||| || | || |||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 61 GATATAGGAGTAGAAGAAGAAGAAGAGTCTTTCTATGCACCTGATGATGATGTCTTGACT 120
Query 323 CTGCTTCAACCTAACTTCACCAGCAACGATGTCTAGTAGTACCAAGAACATTCCAAAACC 382
|||||||||||| ||||||||| ||||||| |||||| | |||||||||||||||||||
Sbjct 121 CTGCTTCAACCT-ACTTCACCACCAACGATATCTAGT-G--CCAAGAACATTCCAAAACC 176
Query 383 TCCTCCTCTTCCTTGTATTACCTACCAGCGTTTTCAATCTAGTACAAGGAAACCTTCGAG 442
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||
Sbjct 177 TCCTCCTCTTCCTTGTATTACCTACCAGCGTTTCCAAGCTAGTACAAGGAAAACTTCTAG 236
Query 443 CTTAAT-GCGCCTTGTGCCTAAAGAAGCACTTGAAACTTGGGATAAGCTTTTCAAGGAAG 501
||| || |||||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 237 CTT-ATCGCGCCTTGTGCCTAAAGAAGCAGTAGAAACTTGGGATAAGCTTTTTAAGGAAG 295
Query 502 GATCTGGAGCAGATACATATGTTGAAACCGATAACAAGTCTCACTTTCCTGCCCATTCAA 561
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 296 GATTTGGAGCAGATACATATGTTGAAACCGATAACAAATCTCACTTTCCTGCCCATTCAA 355
Query 562 GTGTCCTGGCTGCAGCCTCACCAGTTATAGCGACACTTCTGAATCAATCGAGGGATAAGA 621
|||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |
Sbjct 356 GTGTCCTGGCTGCAGCCTCACCAGTTATGGCGAAACTTTTGAATCAATCGAGGGATAAAA 415
Query 622 ATGGGAATACATACCTCAAAATCCATGGAGTTCCTTGTGAAGCAGTCTACATGTTCATTA 681
||||||| |||||||||||||||| ||||| |||| |||||||||| |||||||||||
Sbjct 416 ATGGGAAAACATACCTCAAAATCCCCGGAGTGCCTTATGAAGCAGTCCACATGTTCATTC 475
Query 682 GGTTTCTATACTCTTCCTGCTACGAGGAGGAAGAAATGAAGAAGTTTGTGCTCCATTTAT 741
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 476 GGTTTCTATACTCTTCCTGCTACGAGGAGGAAGAAATGAAGAAGTATGTGCTCCACTTAT 535
Query 742 TGGTTCTGTCACATTGCTACTCGGTCCCATCTCTTAAAAGACTTTGTGTAGAGATTCTCG 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 536 TGGTTCTGTCACATTGCTACTCGGTCCCATCTCTTAAAAGAGTTTGTGTAGAGATTCTCG 595
Query 802 ATCAAGGATGGATTAACAAGGAGAATGTGATCGATGTGCTTCAACTAGCGAGAAACTGTG 861
||||||||||||||||||||||||||||||| || ||||| ||| |||| ||||||||||
Sbjct 596 ATCAAGGATGGATTAACAAGGAGAATGTGATAGACGTGCTACAATTAGCAAGAAACTGTG 655
Query 862 ACG-TGACAAGGATTTGCTTTGTATGTCTTTCCATGGTCATCAAAGACTTCAAATCTGTA 920
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ACGCT-ACAAGGATTTGCTTTGTATGTCTTTCCATGGTCATCAAAGACTTCAAATCTGTA 714
Query 921 TCTTCAACAGAGGGATGGAAAGTGATGAAACGCTCTAATCCTTTGCTCGAACAAGAGCTC 980
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 715 TCTTCAACAGAGGGATGGAAAGTGATGAAACGCGCTAATCCTTTGCTTGAACAAGAGCTC 774
Query 981 ATTGAGGCAGTCATCGAATCCGACAGTAGGAAACAAGAAAGAA-GAAGAAAACTGGAGGA 1039
|||||||||||||||||| | |||| ||||||||||||||||| ||| |||||| |||||
Sbjct 775 ATTGAGGCAGTCATCGAAGCAGACACTAGGAAACAAGAAAGAAGGAA-AAAACTTGAGGA 833
Query 1040 GAGAGAAGTGTATTTGCAGCTCTATGAAGCCATGGAAGCTCTTGTCCACATATGTCGTGA 1099
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 834 GAGAGAAGTGTATATGCAGCTTTATGAAGCCATGGAAGCTCTTGTCCACATATGTAGCGA 893
Query 1100 AGGTTGTGGGACAATTGGACCTCGCGATAAGGCCCTTAAAGGAAGCCATACCGTGTGTAA 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AGGTTGTGGGACAATTGGACCTCGCGATAAGGCCCTTAAAGGAAGCCATACCGTGTGTAA 953
Query 1160 ATTCCCGGCGTGTAAAGGGCTTGAAGGTGCGCTCAGACATTTCTTGGGATGCAAGTCTAG 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 954 ATTCCCGGCGTGTAAAGGGCTTGAAGGTGCGCTCAGACATTTCTTGGGATGCAAGTCCAG 1013
Query 1220 GGCTTCATGTTCT-CATTGCAAAAGGATGTGGCAGCTTCTTCAGCTTCACTCTTGTATCT 1278
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1014 GGCTTCATGT-CTTCATTGCAAAAGAATGTGGCAGCTTCTTCAGCTTCACTCTTGTATCT 1072
Query 1279 GTGATGATTCTAATTCTTGCAAAGTTTCTCTCTGCTGGAATTTCAAGGAGAAAATGAAGA 1338
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GTGACGATTCTAATTCTTGCAAAGTTTCTCTCTGCTGGAATTTCAAGGAGAAAATGAAGA 1132
Query 1339 AGCTTAGCAAGAAAGAACAATCTAAATGGCGATTGCTTGTAGAAAACATTATTAGGGCGA 1398
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1133 AGCTTAGCAAGAAAGAACAATCTAAATGGCGATTGCTTGTAGAAAACATTATTACGGCGA 1192
Query 1399 GGAACAGTCTCGGGCCCTTCTCGTCACGTTCTTCTGGTTTGATATAGAAACAGGTTTTAG 1458
||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 1193 AGAACAGTCTCGGGCCCTTCTCTTCACGTCCTTCTGGTTTGATATAGAA-CAGGTTTTAG 1251
Query 1459 ATTTTAGT 1466
|||||||
Sbjct 1252 TTTTTAGT 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5