BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05710.2
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919275 jgi|Araly1|919275|scaffold_100556.1 420 1e-116
Ahg482096 jgi|Araly1|482096|fgenesh2_kg.4__1156__AT2G31730.1 289 4e-77
> Ahg919275 jgi|Araly1|919275|scaffold_100556.1
Length=490
Score = 420 bits (227), Expect = 1e-116
Identities = 239/245 (98%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 438 ATGGAATTCTCTAGAGACGCTGGAATGATGATGGAGAATAAGCGGAATGTCTGCTCTCTC 497
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 21 ATGGAATTCTCTAGAGACGCTGGAATGATGATGGAGAACAAGCGGAATGTCTGCTCTCTC 80
Query 498 GGAGAAAGCAGTATCAAACGCCACAAGTCTGATCTCTCTTTCAGTTCCAAGGAGAGGAAG 557
|||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct 81 GGAGAAAGCAGTATCAAACGGCACAAGTCTGATCTCTCTTTCAATACCAAGGAGAGGAAG 140
Query 558 GACAAGGTTGGAGAACGTATTTCAGCTCTTCAACAAATAGTTTCCCCTTATGGAAAGACC 617
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 141 GACAAAGTTGGAGAACGTATTTCAGCTCTTCAACAAATAGTTTCCCCTTACGGAAAGACC 200
Query 618 GACACTGCATCAGTTCTTCTAGACGCGATGCATTACATAGAGTTTCTTCACGAACAAGTG 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GACACTGCATCAGTTCTTCTAGACGCGATGCATTACATAGAGTTTCTTCACGAACAAGTG 260
Query 678 AAGGT 682
|||||
Sbjct 261 AAGGT 265
Score = 374 bits (202), Expect = 1e-102
Identities = 220/229 (96%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 745 AGGTGCTAAGTGCTCCGTATCTGCAAACGGTACCTGATGCTACGCAGGAGGAGCTGGAGC 804
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 262 AGGTGCTAAGTGCTCCATATCTGCAAACGATACCTGATGTTACGCAGGAGGAGCTGGAGC 321
Query 805 AGTACAGCCTGAGAAACAGAGGATTATGTCTTGTTCCAATGGAGAATACAGTTGGAGTTG 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 AGTACAGCCTGAGAAACAGAGGATTATGTCTTGTTCCAATGGAGAATACAGTTGGAGTTG 381
Query 865 CTCAAAGCAACGGCGCTGATATATGGGCGCCCGTGAAGACTCCTCTATCACCAGCTTTCA 924
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 382 CTCAAAGCAACGGAGCTGATATCTGGGCGCCCGTGAAGACTCCTCTATCTCCAGCTTTCA 441
Query 925 GTGTCACATCTCAATCACCCTTTAGATGACCAATTCGACTAATCACCTA 973
||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 442 GTGTCACATCTCAATCACCCTTTAGATGACCAATTCGGCTTTTCACCTA 490
> Ahg482096 jgi|Araly1|482096|fgenesh2_kg.4__1156__AT2G31730.1
Length=907
Score = 289 bits (156), Expect = 4e-77
Identities = 232/267 (87%), Gaps = 11/267 (4%)
Strand=Plus/Plus
Query 425 TCTC-TCTCTCCGTATGGAATTCTCTAGAGACGCTG--GA-ATGATGATGGAGAATAAGC 480
|||| | |||| | ||||||| |||||||||| | | || |||||||||||||||||||
Sbjct 318 TCTCTTTTCTCTGAATGGAATACTCTAGAGACTCGGCAGATATGATGATGGAGAATAAGC 377
Query 481 GGAATGTCTGCTCTCTCGGAGAAAGCAGTATCAAACGCCACAA---GTCTGATCTCTCTT 537
| ||||||| |||||| | ||||| || |||||||| ||||| ||||||||||||||
Sbjct 378 GCAATGTCTACTCTCTTGAAGAAAACAACATCAAACGACACAAGTCGTCTGATCTCTCTT 437
Query 538 TCAGTTCCAAGGAGAGGAAGGACAAGGTT-GGAGAACGTATTTCAGCTCTTCAACAAATA 596
|| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 438 TCTCTTCCAAGGAGAGGAAGGACAA-GTTGGGAGAACGTATTTCAGCTCTTCAACAACTA 496
Query 597 GTTTCCCCTTATGGAAAGACCGACACTGCATCAGTTCTTCTAGACGCGA-TGCATTACAT 655
||||||||||| |||||||||||||||||||||||||||||||| | || |||| |||||
Sbjct 497 GTTTCCCCTTACGGAAAGACCGACACTGCATCAGTTCTTCTAGAGG-GAATGCAATACAT 555
Query 656 AGAGTTTCTTCACGAACAAGTGAAGGT 682
|||||||||| |||||||| |||||
Sbjct 556 TCAGTTTCTTCAAGAACAAGTCAAGGT 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44794427475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5