BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05730.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470580 jgi|Araly1|470580|fgenesh2_kg.1__534__AT1G05730.1 1387 0.0
> Ahg470580 jgi|Araly1|470580|fgenesh2_kg.1__534__AT1G05730.1
Length=1001
Score = 1387 bits (751), Expect = 0.0
Identities = 900/968 (93%), Gaps = 26/968 (3%)
Strand=Plus/Plus
Query 80 ATTGAGATCAAATAAAGCACGCATAGAAAGGCACGAACCTTGGTCCTTAACGTATTCAGA 139
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 49 ATTCAGATCAAATAAAGCACGCATAGAAAGGAACGAACCTTGGTCCTTAACGTATTCAGA 108
Query 140 GAGTGAGTGGCAATCGGAGCAGAGTGCAAGACCGCTAAACCCTAGATCCTCACATTCTTT 199
||||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||| |
Sbjct 109 GAGTGAGTGACAATCGGAGCAGAGAGCAAGACCGGTAAACCCTAGATCCTCGCATTCTCT 168
Query 200 AGTGCTGAGCTGCTCTTTTGCTGAGATCGTCGATGCCAATATCAAAATCATCATC-GC-T 257
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |
Sbjct 169 AGTGCTGAGCTGCTCTTTTGCTGAGATCGTCGATGCTAACATCAAAATCATCATCACCTT 228
Query 258 -GATAAAACAACCATCTTCGCCATCTCTCTCTGTTTCATCAACAGATCAAAGTCTTCGCA 316
| | | ||| |||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 229 CG-T-CATCAA-CATCTTCGCCATCTCTCTCTCCCTCATCAACGGATCCAAGTCTTCGCA 285
Query 317 GATCCGACGCTACTCTAACTAATGTCGCTGCCTTGCTATGATCCGATCCGGTCAATTCCG 376
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 286 GATCCGACGCTA--C--GGTAATGTCGCTGCCTTGCTATAATCCGATCCGGTCAATTCCG 341
Query 377 GTTTTTTAAGTATCCGAAAAAGCAATCTTGGTATAGAGGAAACCATCTCCG-GTTATAAA 435
|||||| || |||||||||| ||||| ||||||||||||| | |||||||| |||| ||
Sbjct 342 GTTTTTCAAATATCCGAAAATGCAATATTGGTATAGAGGACATCATCTCCGATTTAT-AA 400
Query 436 TAAAAAAGTC-TTAACCGACGTGAAAAGTGTTAAAACCCCAAT-T-CACATTAGC-CTG- 490
| ||||||| |||||||||| |||||||||||||| ||| || | || |||| | ||
Sbjct 401 -AGAAAAGTCTTTAACCGACGCGAAAAGTGTTAAAA-CCC-ATCTCCA-ATTA-CATTGC 455
Query 491 TTGCGATCTAAAACCTCTAAAACCCTAGAATCAAAATC-GCCCATTCGAGATCGAGAGAG 549
|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 456 CTGCGATCTAAAACCCCTAAAACCCTAGAATCAAAATCTG-CCATTCGAGATCGAGAGAG 514
Query 550 ACGATGGATCACATAGCGGCAGCGGAGGAGCAAATTGTAACGGAGAGGATTAGAAGAAAA 609
||||||||||||||||| || || |||||||||||| |||||||||||||||||||||||
Sbjct 515 ACGATGGATCACATAGCAGCGGCAGAGGAGCAAATTATAACGGAGAGGATTAGAAGAAAA 574
Query 610 CTTGAAGAAGTTAATGCAACTGCTCAATCGCAACTCTCTCCTATTCAAGATCACATCAAT 669
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CTTGAAGAAGTTAATGCATCTGCTCAATCGCAACTCTCTCCTATTCAAGATCACATCAAT 634
Query 670 TTCACCCTTCAGCAAGCCTATTTCAAATGTGCATACGAGTGCTTTGACAGAAATAGGAAG 729
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TTCACCCTTCAGCAAGCTTATTTCAAATGTGCATACGAGTGCTTTGACAGAAATAGGAAG 694
Query 730 CAAGAGGAGATAGCCAACTGTGTTGAGCACTGCAGTGTTCCAGTTGTCAATGCTCAACAG 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 CAAGAGGAGATAGCCAACTGTGTTGAGCACTGCAGTGTTCCAGTTGTCAATGCTCAACAG 754
Query 790 CATTTCGAAGGCGAAATGTCTCAGTTTCAGGAAAGGATGAACAGATCTCTCATGGTCTGT 849
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 755 CATTTCGAAGGCGAAATGGCTCAGTTTCAGGAAAGGATGAACAGATCTCTCATGGTCTGT 814
Query 850 CAAGACAAATTTGAGGCTG-CAAAGCTCCATAAGAACAGGGGAGATGCCGCCAAAGCTAT 908
||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 815 CAAGACAAATTTGAGGC-GTCAAAGCTCCATAAGAACAGGGTTGATGCCGCCAAAGCTAT 873
Query 909 GGAGAGTTGTGTGAACACATCCATTGAGGATAGTCTCGATACATTGCCTCATATTGTGCA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GGAGAGTTGTGTGAACACATCCATTGAGGATAGTCTCGATACATTGCCTCATATTGTGCA 933
Query 969 GAGAATGAAGACGTCATTCTCCATTGCCGACTAATAATAATCCTCTGTTGGGAAAAAGGG 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 934 GAGAATGAAGACGTCATTCTCCATTGCCGACTAATAATAATCCTCTGTTGGGAAAAAAGG 993
Query 1029 GCATCTTT 1036
||||||||
Sbjct 994 GCATCTTT 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5