BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05740.1 Length=438 Score E Sequences producing significant alignments: (Bits) Value Ahg910258 jgi|Araly1|910258|Al_scaffold_0001_512 691 0.0 > Ahg910258 jgi|Araly1|910258|Al_scaffold_0001_512 Length=438 Score = 691 bits (374), Expect = 0.0 Identities = 417/438 (95%), Gaps = 2/438 (0%) Strand=Plus/Plus Query 2 TGGATCGCATGGCAGTTGCGGAAGAGCAAATCCTATTGGAGAGGGTTAGGAGAAAAATCG 61 |||||| || ||||||||||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 2 TGGATCACAAGGCAGTTGCGGAAGAACAAATCGTATTGGAGAGGATTAGGAGAAAAATCG 61 Query 62 AAGAAGTAAATGCATCTGGTCAGTCGCAGCTCTCTCCTATTCAAGAACATATCAGTTTCA 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 AAGAAGTAAATGCATCTGGTCAGTCGCAGCTCTCTCCTATTCAAGAACATATCAGTTTCA 121 Query 122 CCCTTCTGATTTATGCACCTTTGATTGATGATGAATTGCAGCAAGCTTATTTCAAATGCT 181 ||||||||||| |||| ||||||| | ||||||||||| ||||||||||||||||||| | Sbjct 122 CCCTTCTGATTGATGCCCCTTTGAATAATGATGAATTGGAGCAAGCTTATTTCAAATG-T 180 Query 182 -CAAACGAGTGCTTTGAGAAAAGAAGAAAGCCAGAAGTGACAACTAACTGTGTTGAGCTC 240 |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| Sbjct 181 GCAAACGAGTGCTTTGAGAAAAGAAGAAAGCAAGAGGTGACAACCAACTGTGTTGAGCTC 240 Query 241 TGTCGTGTTCCCGTTGCTAAATCTCAACAGCAATTCGATAGCGATATGGCCAAGTTTCAG 300 || ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 241 TGCCGTGTTCCCGTTGTTAATTCTCAACAGCAATTCGATAGCGATAAGGCCAAGTTTCAG 300 Query 301 GATAGGATGAACAGATCTCTCATGGTATGTCAAGACAAATTCGAGGCTGCAAAGCTACTG 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GATAGGATGAACAGATCTCTCATGGTATGTCAAGACAAATTCGAGGCTGCAAAGCTACTA 360 Query 361 AATATGAACAGGATTGATGCCGCCAAAGATATGGAGGGTTGCGTAAACGATGCAGCTGCA 420 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 AATATGAACAGGATTGATGCCGCCAAAGATATGGAGGGTTGCGTCAACGATGCAGCTGCA 420 Query 421 GCATTACTTGGCGGCTAA 438 |||||||||||||||||| Sbjct 421 GCATTACTTGGCGGCTAA 438 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15796413846 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5