BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G05740.1

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910258 jgi|Araly1|910258|Al_scaffold_0001_512                     691    0.0  


> Ahg910258 jgi|Araly1|910258|Al_scaffold_0001_512
Length=438

 Score =  691 bits (374),  Expect = 0.0
 Identities = 417/438 (95%), Gaps = 2/438 (0%)
 Strand=Plus/Plus

Query  2    TGGATCGCATGGCAGTTGCGGAAGAGCAAATCCTATTGGAGAGGGTTAGGAGAAAAATCG  61
            |||||| || ||||||||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct  2    TGGATCACAAGGCAGTTGCGGAAGAACAAATCGTATTGGAGAGGATTAGGAGAAAAATCG  61

Query  62   AAGAAGTAAATGCATCTGGTCAGTCGCAGCTCTCTCCTATTCAAGAACATATCAGTTTCA  121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  62   AAGAAGTAAATGCATCTGGTCAGTCGCAGCTCTCTCCTATTCAAGAACATATCAGTTTCA  121

Query  122  CCCTTCTGATTTATGCACCTTTGATTGATGATGAATTGCAGCAAGCTTATTTCAAATGCT  181
            ||||||||||| |||| ||||||| | ||||||||||| ||||||||||||||||||| |
Sbjct  122  CCCTTCTGATTGATGCCCCTTTGAATAATGATGAATTGGAGCAAGCTTATTTCAAATG-T  180

Query  182  -CAAACGAGTGCTTTGAGAAAAGAAGAAAGCCAGAAGTGACAACTAACTGTGTTGAGCTC  240
             |||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct  181  GCAAACGAGTGCTTTGAGAAAAGAAGAAAGCAAGAGGTGACAACCAACTGTGTTGAGCTC  240

Query  241  TGTCGTGTTCCCGTTGCTAAATCTCAACAGCAATTCGATAGCGATATGGCCAAGTTTCAG  300
            || ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct  241  TGCCGTGTTCCCGTTGTTAATTCTCAACAGCAATTCGATAGCGATAAGGCCAAGTTTCAG  300

Query  301  GATAGGATGAACAGATCTCTCATGGTATGTCAAGACAAATTCGAGGCTGCAAAGCTACTG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  301  GATAGGATGAACAGATCTCTCATGGTATGTCAAGACAAATTCGAGGCTGCAAAGCTACTA  360

Query  361  AATATGAACAGGATTGATGCCGCCAAAGATATGGAGGGTTGCGTAAACGATGCAGCTGCA  420
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  361  AATATGAACAGGATTGATGCCGCCAAAGATATGGAGGGTTGCGTCAACGATGCAGCTGCA  420

Query  421  GCATTACTTGGCGGCTAA  438
            ||||||||||||||||||
Sbjct  421  GCATTACTTGGCGGCTAA  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15796413846


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5